mRNA_H-paniculata_contig16966.3900.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig16966.3900.1 vs. uniprot
Match: D7FVE6_ECTSI (Voltage Gated Calcium/Sodium Channel subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE6_ECTSI) HSP 1 Score: 164 bits (415), Expect = 1.060e-44 Identity = 77/111 (69.37%), Postives = 94/111 (84.68%), Query Frame = 1
Query: 10 FSDDGDEDQGGVIVAQDDCTVYPAWRMVLRRLVDYHQFQNFITVLIVLNTLVLAMDHHPMDDEFALYLEGFNFAFSVCFMVEMTLKLAALGPREYARDNFNLFDGFIVTSG 342
F D+ +E++GG + D+ P WR+VLRRLVD+ +FQN IT+LIVLNTLVLA+DHHPMD+EF+ YLE FNFAFS+CFM+EM LK+AALGPREYA+DNFNLFDGFIV SG
Sbjct: 456 FIDENEEEEGGGVTGNDELQDLPTWRLVLRRLVDHVKFQNSITLLIVLNTLVLALDHHPMDEEFSTYLEVFNFAFSLCFMLEMALKVAALGPREYAKDNFNLFDGFIVISG 566
BLAST of mRNA_H-paniculata_contig16966.3900.1 vs. uniprot
Match: A0A6H5KPD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD7_9PHAE) HSP 1 Score: 109 bits (272), Expect = 2.010e-25 Identity = 51/89 (57.30%), Postives = 63/89 (70.79%), Query Frame = 1
Query: 73 YPAWRMVLRRLVDYHQFQNFITVLIVLNTLVLAMDHHPMDDEFALYLEGFNFAFSVCFMVEMTLKLAALGPREYARDNFNLFDGFIVTS 339
Y WR++L RL F IT LI+LNTL LA+DHHPMDD+F+ L+ N F++CF +EM LKL ALGPR YA+D FNLFDG +V S
Sbjct: 595 YRDWRVILWRLTASDAFLRSITTLIILNTLTLALDHHPMDDDFSTVLDLLNLVFTLCFALEMALKLVALGPRGYAKDKFNLFDGLVVLS 683
BLAST of mRNA_H-paniculata_contig16966.3900.1 vs. uniprot
Match: A0A6H5JIB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB7_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 8.820e-22 Identity = 46/62 (74.19%), Postives = 53/62 (85.48%), Query Frame = 1
Query: 172 MDHHPMDDEFALYLEGFNFAFSVCFMVEMTLK-----LAALGPREYARDNFNLFDGFIVTSG 342
MDHHPMD+EF+ Y+E FNFAFS+CFM+EM LK +AALGPREYA+DNFNLFDGFIV SG
Sbjct: 1 MDHHPMDEEFSTYVEVFNFAFSLCFMLEMALKVGLYRIAALGPREYAKDNFNLFDGFIVISG 62
BLAST of mRNA_H-paniculata_contig16966.3900.1 vs. uniprot
Match: D8LI93_ECTSI (Similar to sodium channel, voltage-gated, type IX, alpha isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI93_ECTSI) HSP 1 Score: 97.8 bits (242), Expect = 2.240e-21 Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 1
Query: 133 ITVLIVLNTLVLAMDHHPMDDEFALYLEGFNFAFSVCFMVEMTLKLAALGPREYARDNFNLFDGFIVTS 339
IT LI+LNTL LA+DHHPMD+EF+ L+ N F++CF +EM LKL ALGPR YA+D FNLFDG +V S
Sbjct: 229 ITTLIILNTLTLALDHHPMDEEFSTVLDLLNLVFTLCFALEMALKLVALGPRGYAKDKFNLFDGLVVLS 297
BLAST of mRNA_H-paniculata_contig16966.3900.1 vs. uniprot
Match: A0A7S1G9I4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G9I4_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 2.420e-20 Identity = 47/81 (58.02%), Postives = 56/81 (69.14%), Query Frame = 1
Query: 94 LRRLVDYHQFQNFITVLIVLNTLVLAMDHHPMDDEFALYLEGFNFAFSVCFMVEMTLKLAALGPREYARDNFNLFDGFIVT 336
+ RLV + F F+ VLIV NT+VLA DHHPMDD + LE NF ++ F +EM LKL LG +EYARD FNLFD FIVT
Sbjct: 458 ITRLVKHPGFSTFVVVLIVANTVVLAWDHHPMDDTLSNNLEIVNFVLTILFTIEMILKLWGLGAKEYARDAFNLFDAFIVT 538
BLAST of mRNA_H-paniculata_contig16966.3900.1 vs. uniprot
Match: K3W515_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W515_GLOUD) HSP 1 Score: 81.6 bits (200), Expect = 1.050e-15 Identity = 39/83 (46.99%), Postives = 57/83 (68.67%), Query Frame = 1
Query: 94 LRRLVDYHQFQNFITVLIVLNTLVLAMDHHPMDDEFALYLEGFNFAFSVCFMVEMTLKLAALGPREYARDNFNLFDGFIVTSG 342
L ++V + F N + ++I+ NT+VLA+DH+PM + LE NF S F++EM +KL LG R+Y+RD FN+FD FIVT+G
Sbjct: 424 LFKIVSHPYFSNLVMLVILGNTVVLALDHYPMPPQLDSDLEIVNFGLSCFFILEMIIKLIGLGLRQYSRDRFNVFDAFIVTTG 506
BLAST of mRNA_H-paniculata_contig16966.3900.1 vs. uniprot
Match: A0A078AKM0_STYLE (Voltage-gated ion channel superfamily n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AKM0_STYLE) HSP 1 Score: 81.3 bits (199), Expect = 1.430e-15 Identity = 40/80 (50.00%), Postives = 56/80 (70.00%), Query Frame = 1
Query: 100 RLVDYHQFQNFITVLIVLNTLVLAMDHHPMDDEFALYLEGFNFAFSVCFMVEMTLKLAALGPREYARDNFNLFDGFIVTS 339
+LV F FI++LIVLNT+ LA+D +P+D+E +L L+ N AFS+ FM+EM +KL A G + Y RD FN+FD +V S
Sbjct: 24 KLVKSSYFTQFISILIVLNTIDLALDRYPIDEEQSLILDEINMAFSMVFMIEMIIKLLAFGFKAYFRDPFNVFDCVVVIS 103
BLAST of mRNA_H-paniculata_contig16966.3900.1 vs. uniprot
Match: A0A2D4C0A0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0A0_PYTIN) HSP 1 Score: 81.3 bits (199), Expect = 1.430e-15 Identity = 43/88 (48.86%), Postives = 55/88 (62.50%), Query Frame = 1
Query: 79 AWRMVLRRLVDYHQFQNFITVLIVLNTLVLAMDHHPMDDEFALYLEGFNFAFSVCFMVEMTLKLAALGPREYARDNFNLFDGFIVTSG 342
A + L R+V + F I V+I NT+VLA+DH+PM LE NF S F++EM LKL LG ++YARD FN+FD FIVT G
Sbjct: 426 ARHLPLFRIVSHPIFGAIIMVVITANTIVLALDHYPMPPALDNDLEIINFGLSCVFLLEMVLKLFGLGLKQYARDQFNIFDAFIVTMG 513
BLAST of mRNA_H-paniculata_contig16966.3900.1 vs. uniprot
Match: A0A2R5G299_9STRA (Voltage-dependent L-type calcium channel subunit alpha-1S n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G299_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 1.960e-15 Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 1
Query: 103 LVDYHQFQNFITVLIVLNTLVLAMDHHPMDDEFALYLEGFNFAFSVCFMVEMTLKLAALGPREYARDNFNLFDGFIVT 336
LV FQ FIT+LIVLNT+ L+M+HH M + + N F++ F +EM LKL LGPR+YA+D FN+FD IVT
Sbjct: 527 LVQSDVFQGFITLLIVLNTITLSMEHHNMSANERAFQDTANATFTIAFTIEMGLKLIGLGPRQYAKDFFNVFDFVIVT 604
BLAST of mRNA_H-paniculata_contig16966.3900.1 vs. uniprot
Match: A0A5D6XXB3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXB3_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 3.640e-15 Identity = 40/74 (54.05%), Postives = 48/74 (64.86%), Query Frame = 1
Query: 121 FQNFITVLIVLNTLVLAMDHHPMDDEFALYLEGFNFAFSVCFMVEMTLKLAALGPREYARDNFNLFDGFIVTSG 342
F +F+ I+ NT+VLA+DHHPM LE NF S F++EM LKL LG R+YARD NLFD FIV SG
Sbjct: 475 FSHFVMGAILANTVVLALDHHPMPPTLDEDLEIINFGLSCIFIIEMVLKLFGLGLRQYARDRMNLFDAFIVLSG 548 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16966.3900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16966.3900.1 >prot_H-paniculata_contig16966.3900.1 ID=prot_H-paniculata_contig16966.3900.1|Name=mRNA_H-paniculata_contig16966.3900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp NGGFSDDGDEDQGGVIVAQDDCTVYPAWRMVLRRLVDYHQFQNFITVLIVback to top mRNA from alignment at H-paniculata_contig16966:630..3114- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig16966.3900.1 ID=mRNA_H-paniculata_contig16966.3900.1|Name=mRNA_H-paniculata_contig16966.3900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2485bp|location=Sequence derived from alignment at H-paniculata_contig16966:630..3114- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig16966:630..3114- >mRNA_H-paniculata_contig16966.3900.1 ID=mRNA_H-paniculata_contig16966.3900.1|Name=mRNA_H-paniculata_contig16966.3900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig16966:630..3114- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |