prot_H-paniculata_contig16962.3898.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig16962.3898.1
Unique Name	prot_H-paniculata_contig16962.3898.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	126

Homology

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BLAST of mRNA_H-paniculata_contig16962.3898.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 4.480e-70
Identity = 114/124 (91.94%), Postives = 118/124 (95.16%), Query Frame = 0

Query:    1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGACAPVYLAAVLEYLTAEVLELAGNAVRDNKKARIVPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKIVKK 124
            MSGKGKGGRG  KKS TRSAKAGLQFPVGR+GRFLK+GKYASRVGA APVYLAAVLEYLTAEVLELAGNA RDNKKARI+PRH+QLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VKK
Sbjct:    1 MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122

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BLAST of mRNA_H-paniculata_contig16962.3898.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 1.530e-68
Identity = 113/123 (91.87%), Postives = 117/123 (95.12%), Query Frame = 0

Query:    1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGACAPVYLAAVLEYLTAEVLELAGNAVRDNKKARIVPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKIVK 123
            MSGKGKGGRG  KKS TRSAKAGLQFPVGR+GRFLK+GKYASRVGA APVYLAAVLEYLTAEVLELAGNA RDNKKARI+PRH+QLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VK
Sbjct:   46 MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166

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BLAST of mRNA_H-paniculata_contig16962.3898.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 5.180e-65
Identity = 106/120 (88.33%), Postives = 114/120 (95.00%), Query Frame = 0

Query:    1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGACAPVYLAAVLEYLTAEVLELAGNAVRDNKKARIVPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 120
            MSGKGKGGRG  KKS ++S+KAGLQFPV RIGR+LK+GKYA+RVGA APVYLAAVLEYLTAEVLELAGNA RDNKKARI+PRH+QLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct:    1 MSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118

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BLAST of mRNA_H-paniculata_contig16962.3898.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 1.250e-64
Identity = 105/120 (87.50%), Postives = 112/120 (93.33%), Query Frame = 0

Query:    1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGACAPVYLAAVLEYLTAEVLELAGNAVRDNKKARIVPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 120
            MSGKGKGGRG  KK  +RSAKAGLQFPVGRIGRF+KQGKY+SRVG  APVY+AAVLEYLTAEVLELAGNA RDNKKARIVPRH+QLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct:    1 MSGKGKGGRG--KKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118

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BLAST of mRNA_H-paniculata_contig16962.3898.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 2.640e-64
Identity = 106/120 (88.33%), Postives = 114/120 (95.00%), Query Frame = 0

Query:    1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGACAPVYLAAVLEYLTAEVLELAGNAVRDNKKARIVPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 120
            MSGKGKGGRG  KKS ++S+KAGLQFPV RIGR+LK+GKYA+RVGA APVYLAAVLEYLTAEVLELAGNA RDNKKARI+PRH+QLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct:   52 MSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 169

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BLAST of mRNA_H-paniculata_contig16962.3898.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA)

HSP 1 Score: 198 bits (503), Expect = 1.610e-63
Identity = 105/123 (85.37%), Postives = 113/123 (91.87%), Query Frame = 0

Query:    1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGACAPVYLAAVLEYLTAEVLELAGNAVRDNKKARIVPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKIVK 123
            MSGKGKGGRG GKKS T SAKAGLQFPVGRIGR+L+QGKYA+R+GA APVYLAAVLEYL AE+LELAGNA RDNKK+RIVPRH+ LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK  K
Sbjct:    1 MSGKGKGGRG-GKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122

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BLAST of mRNA_H-paniculata_contig16962.3898.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA)

HSP 1 Score: 197 bits (501), Expect = 5.830e-63
Identity = 100/118 (84.75%), Postives = 113/118 (95.76%), Query Frame = 0

Query:    3 GKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGACAPVYLAAVLEYLTAEVLELAGNAVRDNKKARIVPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 120
            GKGKGGRGD KK+V++SAKAGLQFPVGR+GRFLKQG+YA RVGA APVY+AAV+EYL AEVLEL+GNA RDNKK+RI+PRH+QLAVRNDEELNKLLG+VTIA+GGVLPNIHAVLLPKK
Sbjct:    5 GKGKGGRGD-KKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKK 121

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BLAST of mRNA_H-paniculata_contig16962.3898.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA)

HSP 1 Score: 196 bits (499), Expect = 6.560e-63
Identity = 102/120 (85.00%), Postives = 112/120 (93.33%), Query Frame = 0

Query:    1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGACAPVYLAAVLEYLTAEVLELAGNAVRDNKKARIVPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 120
            MSGKGKGGRG+ KKS T SAKAGLQFPVGRIGR+L+QGKYA+R+GA APVYLAAVLEYL AE+LELAGNA RDNKK+RIVPRH+ LAV+NDEELNKLLG VTIASGGVLPNIHA+LLPKK
Sbjct:    1 MSGKGKGGRGE-KKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKK 119

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BLAST of mRNA_H-paniculata_contig16962.3898.1 vs. uniprot
Match: A0A061QUG5_9CHLO (Histone H2A n=4 Tax=core chlorophytes TaxID=2692248 RepID=A0A061QUG5_9CHLO)

HSP 1 Score: 197 bits (500), Expect = 6.810e-63
Identity = 102/124 (82.26%), Postives = 114/124 (91.94%), Query Frame = 0

Query:    1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGACAPVYLAAVLEYLTAEVLELAGNAVRDNKKARIVPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKIVKK 124
            MSG+GKG    GKK+V+RSAKAGLQFPVGR+ R+LK+GKYA+R+GA APVYLAAVLEYLTAEVLELAGNA RDNKK RIVPRH+QLAVRNDEEL+KLLG+VTIASGGVLPNIH+VLLPKK  KK
Sbjct:    1 MSGRGKGKSAAGKKAVSRSAKAGLQFPVGRVARYLKKGKYATRIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIASGGVLPNIHSVLLPKKSDKK 124

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BLAST of mRNA_H-paniculata_contig16962.3898.1 vs. uniprot
Match: A0A7S0DT92_9EUKA (Histone H2A n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DT92_9EUKA)

HSP 1 Score: 196 bits (499), Expect = 1.910e-62
Identity = 102/122 (83.61%), Postives = 113/122 (92.62%), Query Frame = 0

Query:    1 MSGKGKGGRGDGK--KSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGACAPVYLAAVLEYLTAEVLELAGNAVRDNKKARIVPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 120
            MSGKGKGGRG GK  KS TRSA+AGLQFPVGRI RFL++G++A+RVG  APVYLAAVLEYLTAE+LELAGNA RDNK++RI+PRHVQLA+RNDEELNKLLG VTIASGGVLPNIHAVLLPKK
Sbjct:    1 MSGKGKGGRGKGKAVKSTTRSARAGLQFPVGRISRFLRKGRFAARVGGGAPVYLAAVLEYLTAEILELAGNAARDNKRSRIIPRHVQLAIRNDEELNKLLGGVTIASGGVLPNIHAVLLPKK 122

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig16962.3898.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig16962.3898.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FWI9_ECTSI	4.480e-70	91.94	Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7...	[more]
D7G193_ECTSI	1.530e-68	91.87	Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2...	[more]
A0A6H5KG79_9PHAE	5.180e-65	88.33	Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta...	[more]
D8LLP0_ECTSI	1.250e-64	87.50	Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8...	[more]
D7FVQ5_ECTSI	2.640e-64	88.33	Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2...	[more]
A0A6U2JFS4_9STRA	1.610e-63	85.37	Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 Rep...	[more]
A0A835ZLE9_9STRA	5.830e-63	84.75	Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R...	[more]
A0A448ZH28_9STRA	6.560e-63	85.00	Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 Re...	[more]
A0A061QUG5_9CHLO	6.810e-63	82.26	Histone H2A n=4 Tax=core chlorophytes TaxID=269224...	[more]
A0A7S0DT92_9EUKA	1.910e-62	83.61	Histone H2A n=1 Tax=Amorphochlora amoebiformis Tax...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 100..118 score: 76.04 coord: 43..58 score: 85.0 coord: 14..36 score: 69.65 coord: 58..71 score: 84.01 coord: 72..86 score: 73.97
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 3..123 e-value: 1.0E-76 score: 270.8
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 12..89 e-value: 3.0E-14 score: 53.5
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 92..124 e-value: 2.1E-18 score: 65.8
IPR009072	Histone-fold	GENE3D	1.10.20.10		coord: 1..125 e-value: 1.7E-60 score: 204.5
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 5..123
None	No IPR available	PANTHER	PTHR23430:SF251		coord: 8..124
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 8..124
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 22..28

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig16962	contig	H-paniculata_contig16962:4208..4585 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig16962.3898.1	mRNA_H-paniculata_contig16962.3898.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig16962 4208..4585 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig16962.3898.1 ID=prot_H-paniculata_contig16962.3898.1|Name=mRNA_H-paniculata_contig16962.3898.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGACAPV
YLAAVLEYLTAEVLELAGNAVRDNKKARIVPRHVQLAVRNDEELNKLLGE
VTIASGGVLPNIHAVLLPKKIVKKV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002119	Histone_H2A
IPR007125	Histone_H2A/H2B/H3
IPR032454	Histone_H2A_C
IPR009072	Histone-fold
IPR032458	Histone_H2A_CS