mRNA_H-paniculata_contig16962.3898.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig16962.3898.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 214 bits (546), Expect = 4.480e-70 Identity = 114/124 (91.94%), Postives = 118/124 (95.16%), Query Frame = 1
Query: 1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGACAPVYLAAVLEYLTAEVLELAGNAVRDNKKARIVPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKIVKK 372
MSGKGKGGRG KKS TRSAKAGLQFPVGR+GRFLK+GKYASRVGA APVYLAAVLEYLTAEVLELAGNA RDNKKARI+PRH+QLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VKK
Sbjct: 1 MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
BLAST of mRNA_H-paniculata_contig16962.3898.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 213 bits (541), Expect = 1.530e-68 Identity = 113/123 (91.87%), Postives = 117/123 (95.12%), Query Frame = 1
Query: 1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGACAPVYLAAVLEYLTAEVLELAGNAVRDNKKARIVPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKIVK 369
MSGKGKGGRG KKS TRSAKAGLQFPVGR+GRFLK+GKYASRVGA APVYLAAVLEYLTAEVLELAGNA RDNKKARI+PRH+QLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VK
Sbjct: 46 MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166
BLAST of mRNA_H-paniculata_contig16962.3898.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 202 bits (514), Expect = 5.180e-65 Identity = 106/120 (88.33%), Postives = 114/120 (95.00%), Query Frame = 1
Query: 1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGACAPVYLAAVLEYLTAEVLELAGNAVRDNKKARIVPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
MSGKGKGGRG KKS ++S+KAGLQFPV RIGR+LK+GKYA+RVGA APVYLAAVLEYLTAEVLELAGNA RDNKKARI+PRH+QLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_H-paniculata_contig16962.3898.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI) HSP 1 Score: 201 bits (510), Expect = 1.250e-64 Identity = 105/120 (87.50%), Postives = 112/120 (93.33%), Query Frame = 1
Query: 1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGACAPVYLAAVLEYLTAEVLELAGNAVRDNKKARIVPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
MSGKGKGGRG KK +RSAKAGLQFPVGRIGRF+KQGKY+SRVG APVY+AAVLEYLTAEVLELAGNA RDNKKARIVPRH+QLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRG--KKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_H-paniculata_contig16962.3898.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI) HSP 1 Score: 202 bits (514), Expect = 2.640e-64 Identity = 106/120 (88.33%), Postives = 114/120 (95.00%), Query Frame = 1
Query: 1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGACAPVYLAAVLEYLTAEVLELAGNAVRDNKKARIVPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
MSGKGKGGRG KKS ++S+KAGLQFPV RIGR+LK+GKYA+RVGA APVYLAAVLEYLTAEVLELAGNA RDNKKARI+PRH+QLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 52 MSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 169
BLAST of mRNA_H-paniculata_contig16962.3898.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA) HSP 1 Score: 198 bits (503), Expect = 1.610e-63 Identity = 105/123 (85.37%), Postives = 113/123 (91.87%), Query Frame = 1
Query: 1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGACAPVYLAAVLEYLTAEVLELAGNAVRDNKKARIVPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKIVK 369
MSGKGKGGRG GKKS T SAKAGLQFPVGRIGR+L+QGKYA+R+GA APVYLAAVLEYL AE+LELAGNA RDNKK+RIVPRH+ LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK K
Sbjct: 1 MSGKGKGGRG-GKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122
BLAST of mRNA_H-paniculata_contig16962.3898.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA) HSP 1 Score: 197 bits (501), Expect = 5.830e-63 Identity = 100/118 (84.75%), Postives = 113/118 (95.76%), Query Frame = 1
Query: 7 GKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGACAPVYLAAVLEYLTAEVLELAGNAVRDNKKARIVPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
GKGKGGRGD KK+V++SAKAGLQFPVGR+GRFLKQG+YA RVGA APVY+AAV+EYL AEVLEL+GNA RDNKK+RI+PRH+QLAVRNDEELNKLLG+VTIA+GGVLPNIHAVLLPKK
Sbjct: 5 GKGKGGRGD-KKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKK 121
BLAST of mRNA_H-paniculata_contig16962.3898.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA) HSP 1 Score: 196 bits (499), Expect = 6.560e-63 Identity = 102/120 (85.00%), Postives = 112/120 (93.33%), Query Frame = 1
Query: 1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGACAPVYLAAVLEYLTAEVLELAGNAVRDNKKARIVPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
MSGKGKGGRG+ KKS T SAKAGLQFPVGRIGR+L+QGKYA+R+GA APVYLAAVLEYL AE+LELAGNA RDNKK+RIVPRH+ LAV+NDEELNKLLG VTIASGGVLPNIHA+LLPKK
Sbjct: 1 MSGKGKGGRGE-KKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKK 119
BLAST of mRNA_H-paniculata_contig16962.3898.1 vs. uniprot
Match: A0A061QUG5_9CHLO (Histone H2A n=4 Tax=core chlorophytes TaxID=2692248 RepID=A0A061QUG5_9CHLO) HSP 1 Score: 197 bits (500), Expect = 6.810e-63 Identity = 102/124 (82.26%), Postives = 114/124 (91.94%), Query Frame = 1
Query: 1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGACAPVYLAAVLEYLTAEVLELAGNAVRDNKKARIVPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKIVKK 372
MSG+GKG GKK+V+RSAKAGLQFPVGR+ R+LK+GKYA+R+GA APVYLAAVLEYLTAEVLELAGNA RDNKK RIVPRH+QLAVRNDEEL+KLLG+VTIASGGVLPNIH+VLLPKK KK
Sbjct: 1 MSGRGKGKSAAGKKAVSRSAKAGLQFPVGRVARYLKKGKYATRIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIASGGVLPNIHSVLLPKKSDKK 124
BLAST of mRNA_H-paniculata_contig16962.3898.1 vs. uniprot
Match: A0A7S0DT92_9EUKA (Histone H2A n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DT92_9EUKA) HSP 1 Score: 196 bits (499), Expect = 1.910e-62 Identity = 102/122 (83.61%), Postives = 113/122 (92.62%), Query Frame = 1
Query: 1 MSGKGKGGRGDGK--KSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGACAPVYLAAVLEYLTAEVLELAGNAVRDNKKARIVPRHVQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
MSGKGKGGRG GK KS TRSA+AGLQFPVGRI RFL++G++A+RVG APVYLAAVLEYLTAE+LELAGNA RDNK++RI+PRHVQLA+RNDEELNKLLG VTIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRGKGKAVKSTTRSARAGLQFPVGRISRFLRKGRFAARVGGGAPVYLAAVLEYLTAEILELAGNAARDNKRSRIIPRHVQLAIRNDEELNKLLGGVTIASGGVLPNIHAVLLPKK 122 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16962.3898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16962.3898.1 >prot_H-paniculata_contig16962.3898.1 ID=prot_H-paniculata_contig16962.3898.1|Name=mRNA_H-paniculata_contig16962.3898.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGACAPVback to top mRNA from alignment at H-paniculata_contig16962:4208..4585+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig16962.3898.1 ID=mRNA_H-paniculata_contig16962.3898.1|Name=mRNA_H-paniculata_contig16962.3898.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=378bp|location=Sequence derived from alignment at H-paniculata_contig16962:4208..4585+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig16962:4208..4585+ >mRNA_H-paniculata_contig16962.3898.1 ID=mRNA_H-paniculata_contig16962.3898.1|Name=mRNA_H-paniculata_contig16962.3898.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig16962:4208..4585+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |