mRNA_H-paniculata_contig1696.3897.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1696.3897.1 vs. uniprot
Match: D8LP04_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP04_ECTSI) HSP 1 Score: 265 bits (677), Expect = 3.640e-83 Identity = 134/195 (68.72%), Postives = 156/195 (80.00%), Query Frame = 2
Query: 74 LASLTLTVATVPLARAQFGMPPKQRSSPIKGDLSAIKCGVCQALADHMYAKVDEMREVAPFGKVHEDEISSVMELACDPTTPEGRWMTQYDIVEDEEYLKLKKPGGMSHCKEECETIAKSCSALVGDELDEEELVVALWKNKLESEAFRKVMCEDWSERCSGK-RVKAPKDRQDFEFMEKSAKDFEMDDLMASLQ 655
LA LTL A +PL AQFGMPPK +S P+KGDL+AIKCGVCQ LA+H+Y KV EMRE APFGKVHED+IS+V+E ACDP T EGRW+T+YDIVE+ YL+LKK SHCKEECETIAKSC+ LV DELD EE+VVALWKNKL +K C +WS+RCSGK RVKAPKDRQD+EF K+AKDFE+ + M LQ
Sbjct: 4 LAVLTLAAAAIPL-NAQFGMPPKPKSDPVKGDLAAIKCGVCQGLAEHLYEKVAEMREAAPFGKVHEDDISTVIEGACDPATKEGRWITEYDIVEEGGYLELKKQDSFSHCKEECETIAKSCTVLVDDELDVEEVVVALWKNKLGLSELQKAACGEWSDRCSGKKRVKAPKDRQDYEFEPKTAKDFEVAEAMERLQ 197
BLAST of mRNA_H-paniculata_contig1696.3897.1 vs. uniprot
Match: UPI000A2A7991 (uncharacterized protein LOC110237839 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A7991) HSP 1 Score: 100 bits (249), Expect = 3.370e-20 Identity = 52/176 (29.55%), Postives = 94/176 (53.41%), Query Frame = 2
Query: 134 PPKQRSSPIKGDLSAIKCGVCQALADHMYAKVDEMREVAPFGKVHEDEISSVMELACDPTTPEGRWMTQYDIVEDEEYLKLKKPGGMSHCKEECETIAKSCSALVGDELDEEELVVALWKNKLESEAFRKVMCEDWSERCSGKRVKAPKDRQDFEFMEKSAKDFEMDDLMASLQGM 661
P K++ +K ++ I+C CQ ++Y K EM++ A K+ E+EI +++E +C+P EG W++++D+V D L+L + C++EC+TIAK+C +G+ + +L LW++KL C S C K R D EF+ S + + D ++ ++G+
Sbjct: 31 PKKEKFYAVKEEVKFIRCETCQKAVKYLYRKAKEMKDKATTKKISEEEIINLVEKSCNPGKEEGEWISKFDLVADNNELRLVEKQBFGRCRKECQTIAKACEESIGEA--DTDLGELLWQDKLSLSKLINKFCYSMSSSCKSNNPKFKGKRADEEFLVMSEDERKADQVLKQMRGI 204
BLAST of mRNA_H-paniculata_contig1696.3897.1 vs. uniprot
Match: A0A7S0QAU7_9EUKA (Hypothetical protein n=2 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QAU7_9EUKA) HSP 1 Score: 77.4 bits (189), Expect = 1.820e-12 Identity = 68/223 (30.49%), Postives = 106/223 (47.53%), Query Frame = 2
Query: 50 EQGRMRTGLASLTLTVATVPLARAQFGM---PPKQRSSPIKGDLSAIKCGVCQALADHMYAKVDEMREVAPFGKVHEDEISSVMELACDPTTP-------EGRWMTQYDIVEDEEYLKLKKPGGMSHCKEECETIAKSCSALVGDELDEEELVVALWKNKLESEA---FRKVMCEDWSERCSGKRVKAP-----KDRQDFEFMEKSAKDFEMDDLMASLQGMG 664
++G R LT VA+V AQFGM P K +S+P+ DL +KC C+ + + +R+ + + + ++E CD EG WM++ DI + + L L G HC+ EC TIAK C ++G LD +E+ + E + + +C + C K+ K P K R+D F K KD E++DL+AS++GMG
Sbjct: 6 DRGMARVINVLLTAAVASV---CAQFGMDQMPKKPKSAPLPDDLKYLKCETCKRMV------TEAVRQASSLST--QSAVEDMLEKVCDADADGKEGRGSEGIWMSELDISKKGQALVLSHRGA-GHCRRECRTIAKVCDGVLG-RLDADEIAEVIRDGAREGTSAGMMAQRVCTKMAGVC--KKGKVPLWPEGKVRKDETFKPKDKKDDELEDLLASMKGMG 213
BLAST of mRNA_H-paniculata_contig1696.3897.1 vs. uniprot
Match: A0A7S4MLP3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MLP3_9EUKA) HSP 1 Score: 67.4 bits (163), Expect = 1.600e-9 Identity = 48/154 (31.17%), Postives = 77/154 (50.00%), Query Frame = 2
Query: 110 LARAQFGM---PPKQRSSPIKGDLSAIKCGVCQALADHMYAKVD---EMREVAPFGKVH----------EDEISSVMELACDPTTPEGRWMTQYDIVEDEEYLKLKKP------GGMSHCKEECETIAKSCSALVGDELDEE--ELVVALWKNK 499
+ARAQ GM P K + PI D+ I+C C+ + +V+ ++ + P K E + V+ C P+G+WM++YDIV+ + LKL+ GG HCK EC TI K+C+ ++ + +DE+ EL++ K K
Sbjct: 19 VARAQMGMDGLPKKPKPQPIDSDVKYIRCQTCELMVARALEQVNTAVKLEKPKPQQKRRFDSSSNLGGLESTVEDVVTSICSSEDPQGKWMSEYDIVKRDRALKLENQVNDDVVGG--HCKRECRTIEKACAGVL-EAVDEDLPELLLEAAKTK 169
BLAST of mRNA_H-paniculata_contig1696.3897.1 vs. uniprot
Match: A0A7S2CPR7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CPR7_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 2.470e-6 Identity = 56/207 (27.05%), Postives = 87/207 (42.03%), Query Frame = 2
Query: 161 KGDLSAIKCGVCQALADHMYAKVDEMREVAPFGKV-------------HEDEISSVMELACDPTTPEGRWMTQYDIVE--------DEEYL-----KLKKPGGMSHC------------KEECETIAKSCSALVGDELDEEELVVALWKNKLESEAFRKVMCEDWSERCSGK-RVKAPKDRQDFEFMEKSAKDFEMDDLMASLQGMG 664
K DL I C VC+ + + + +E R AP V EDE+ ++ C G W+ + D+VE ++ ++ K +K G S+ E T+ +SC L D +D +EL VALWK +L+ A + CE+ S C K R K +R D F A+ E + +M S++ G
Sbjct: 47 KYDLKLIGCDVCRFVVEQVREATEEKRAEAPIVSVAVRPGKKERRSSFSEDEVQEILGDVCHRKKKVGAWLWRTDLVEHTAKSTKHNQSFVYRPITKSEKKNGGSYLLIEHHPDYYGVWDREKATVQRSCERLFED-MDVDELSVALWKGELDEAALVSLTCEELSNSCGKKNRPKLMLERDDIAFEVTDAQLVETEQMMQSMEDSG 252 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1696.3897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1696.3897.1 >prot_H-paniculata_contig1696.3897.1 ID=prot_H-paniculata_contig1696.3897.1|Name=mRNA_H-paniculata_contig1696.3897.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=251bp MRTGLASLTLTVATVPLARAQFGMPPKQRSSPIKGDLSAIKCGVCQALADback to top mRNA from alignment at H-paniculata_contig1696:19147..23429+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1696.3897.1 ID=mRNA_H-paniculata_contig1696.3897.1|Name=mRNA_H-paniculata_contig1696.3897.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4283bp|location=Sequence derived from alignment at H-paniculata_contig1696:19147..23429+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1696:19147..23429+ >mRNA_H-paniculata_contig1696.3897.1 ID=mRNA_H-paniculata_contig1696.3897.1|Name=mRNA_H-paniculata_contig1696.3897.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1506bp|location=Sequence derived from alignment at H-paniculata_contig1696:19147..23429+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |