mRNA_H-paniculata_contig1696.3896.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1696.3896.1
Unique NamemRNA_H-paniculata_contig1696.3896.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1696.3896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1696contigH-paniculata_contig1696:3196..4095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size900
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1696.3896.1prot_H-paniculata_contig1696.3896.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1696 3588..4055 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929341.6074839-UTR-H-paniculata_contig1696:3195..35871622929341.6074839-UTR-H-paniculata_contig1696:3195..3587Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1696 3196..3587 +
1691480822.2866058-UTR-H-paniculata_contig1696:3195..35871691480822.2866058-UTR-H-paniculata_contig1696:3195..3587Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1696 3196..3587 +
1622929341.6398447-UTR-H-paniculata_contig1696:4055..40951622929341.6398447-UTR-H-paniculata_contig1696:4055..4095Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1696 4056..4095 +
1691480822.302765-UTR-H-paniculata_contig1696:4055..40951691480822.302765-UTR-H-paniculata_contig1696:4055..4095Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1696 4056..4095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929341.6241899-CDS-H-paniculata_contig1696:3587..40551622929341.6241899-CDS-H-paniculata_contig1696:3587..4055Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1696 3588..4055 +
1691480822.295194-CDS-H-paniculata_contig1696:3587..40551691480822.295194-CDS-H-paniculata_contig1696:3587..4055Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1696 3588..4055 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1696.3896.1

>prot_H-paniculata_contig1696.3896.1 ID=prot_H-paniculata_contig1696.3896.1|Name=mRNA_H-paniculata_contig1696.3896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
MNKMVRQALQQSNRNSSTSTSKKHTRNHRWSKTKFKMIQHYHPTTARSTS
LTNCTHNVSEQSWVLYPTGYMITDISRPADKGFFSTWKPGEGSKRRGSVR
GTSSELQAQAETLHIDYTVRATIACTPLVTQDNFNNRTASTNNTENTLCN
MRECK*
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mRNA from alignment at H-paniculata_contig1696:3196..4095+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1696.3896.1 ID=mRNA_H-paniculata_contig1696.3896.1|Name=mRNA_H-paniculata_contig1696.3896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=900bp|location=Sequence derived from alignment at H-paniculata_contig1696:3196..4095+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATGGACCCCTGGCGCGTGCCACACAAGGCGGTTTCGAGGAAAGGACGG
GGGGGAGGGTAACTGAGTAGTTTATTCATCAATAGTCGAACACTCCGAGT
AACGTACAAGTGTGATTTGCGTTTGTGATGTCAGCTATTTTCGCGGTGGT
CTCCACCCTTACCACTCAACCACACCTCTGCATAATGTTCACGCACAATC
ATATTCTACCACGTTCCAGAACTGAACAAAAAGAATCTTACAGGGTCCAT
TTAAAATGAGTCGCGACAGTCGGGGGAAGATGTTGAAAAGATAGACAACA
AAATAAGCAACTCCACACAACTCGGTCCCGACTGCTGTTGCTGCTGTTGC
TGTAGCTGCTGCGCTCTCACATGGGTGCATGAGTGAGCCCCAATGAACAA
AATGGTCAGACAAGCGCTTCAGCAAAGCAACCGCAATAGCAGCACGAGCA
CAAGCAAAAAGCACACGCGAAACCACCGTTGGAGCAAGACAAAATTCAAG
ATGATTCAACACTACCATCCTACAACCGCAAGAAGCACATCTCTCACAAA
CTGCACTCATAACGTTTCGGAACAGTCTTGGGTTCTCTATCCAACTGGTT
ACATGATTACAGACATATCCCGACCAGCGGACAAAGGATTTTTCTCCACC
TGGAAACCGGGGGAGGGCTCAAAACGCCGCGGCTCAGTAAGGGGAACAAG
TAGCGAACTTCAAGCACAAGCAGAAACCCTGCACATCGACTATACAGTAA
GAGCGACGATAGCATGTACGCCTCTTGTCACTCAAGACAATTTCAACAAC
AGGACCGCATCGACAAACAACACGGAGAACACACTTTGCAACATGCGCGA
GTGCAAATAGATACATGTATAGATGCCCATGAAAAATCAATCAAAATTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1696:3196..4095+

>mRNA_H-paniculata_contig1696.3896.1 ID=mRNA_H-paniculata_contig1696.3896.1|Name=mRNA_H-paniculata_contig1696.3896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig1696:3196..4095+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACAAAATGGTCAGACAAGCGCTTCAGCAAAGCAACCGCAATAGCAG
CACGAGCACAAGCAAAAAGCACACGCGAAACCACCGTTGGAGCAAGACAA
AATTCAAGATGATTCAACACTACCATCCTACAACCGCAAGAAGCACATCT
CTCACAAACTGCACTCATAACGTTTCGGAACAGTCTTGGGTTCTCTATCC
AACTGGTTACATGATTACAGACATATCCCGACCAGCGGACAAAGGATTTT
TCTCCACCTGGAAACCGGGGGAGGGCTCAAAACGCCGCGGCTCAGTAAGG
GGAACAAGTAGCGAACTTCAAGCACAAGCAGAAACCCTGCACATCGACTA
TACAGTAAGAGCGACGATAGCATGTACGCCTCTTGTCACTCAAGACAATT
TCAACAACAGGACCGCATCGACAAACAACACGGAGAACACACTTTGCAAC
ATGCGCGAGTGCAAATAGATGAACAAAATGGTCAGACAAGCGCTTCAGCA
AAGCAACCGCAATAGCAGCACGAGCACAAGCAAAAAGCACACGCGAAACC
ACCGTTGGAGCAAGACAAAATTCAAGATGATTCAACACTACCATCCTACA
ACCGCAAGAAGCACATCTCTCACAAACTGCACTCATAACGTTTCGGAACA
GTCTTGGGTTCTCTATCCAACTGGTTACATGATTACAGACATATCCCGAC
CAGCGGACAAAGGATTTTTCTCCACCTGGAAACCGGGGGAGGGCTCAAAA
CGCCGCGGCTCAGTAAGGGGAACAAGTAGCGAACTTCAAGCACAAGCAGA
AACCCTGCACATCGACTATACAGTAAGAGCGACGATAGCATGTACGCCTC
TTGTCACTCAAGACAATTTCAACAACAGGACCGCATCGACAAACAACACG
GAGAACACACTTTGCAACATGCGCGAGTGCAAATAG
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