mRNA_H-paniculata_contig16952.3892.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16952.3892.1
Unique NamemRNA_H-paniculata_contig16952.3892.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16952.3892.1 vs. uniprot
Match: D7G7D4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7D4_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 1.740e-53
Identity = 135/293 (46.08%), Postives = 184/293 (62.80%), Query Frame = 1 
Query:   82 FHDREALEEKMQQLRAEELRLSATEEDLKEKLSHAEAALSAIRSEKRELSTANTLNAVVEGQQYMGRRTMSKNNVKWGGRSSVKSERNINSEGNGDERLKRREELVNFEATDRIMELEVLNNQLRKGQANAESEASSNDAAARLTQGELERAEKRLNSIPKRFTESLQMLHDEVEGLEKEKLSLELAKNRKNLQEADVMADIRRQQKELAAELDYLIDDIHDVEDDRDVWKRQLHVESSCATALQAQRFEALTNLKARFGEDAVDRAAFATAVFKDEDEARGLEGCSGVSILG 960
            F+D+EAL+E++Q L+AE + LS  E  L  +L+ A+A LS +R +K  LS A  L+ V+                   GR   +SE N +  G  + R ++R E  NF A DR+MELE+LN+QLRKGQA AE  A   +   R T+ E+ +  +RL ++PKRFT+SLQ L DEVE LE+EK +LELAK RK  +EAD++A  +RQQ  L  EL  L+D+I DVEDDRD WKR+L VE++ A +L++QR EAL  L+ RFG DAV+RAAFA   F    +  G +G   +S  G
Sbjct:   52 FYDKEALQEQLQGLQAEGIDLSEKETHLGLRLAKAQATLSKMREKKVGLSQAKMLDEVMSVFPAKAADISV-------GRKHRESESNGDGGGRREARSQQRHEETNFAAQDRVMELELLNSQLRKGQAEAERNAKLQEDTFRSTRAEVNKVAERLKAMPKRFTQSLQSLRDEVETLEREKFNLELAKERKTSKEADLIASAKRQQSYLGEELKSLLDEIDDVEDDRDRWKRRLRVETTRAESLRSQRDEALRALRERFGSDAVERAAFAR--FATAPKGSGGDGLMALSRRG 335
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BLAST of mRNA_H-paniculata_contig16952.3892.1 vs. uniprot
Match: A0A6H5K3E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3E6_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 2.950e-53
Identity = 154/385 (40.00%), Postives = 210/385 (54.55%), Query Frame = 1 
Query:   82 FHDREALEEKMQQLRAEELRLSATEEDLKEKLSHAEAALSAIRSEKRELSTANTLNAVVE------GQQYMGRRTM-SKNNVKWGGRSSVKSERNINSEGNGDERLKRREELVNFEATDRIMELEVLNNQLRKGQANAESEASSNDAAARLTQGELERAEKRLNSIPKRFTESLQMLHDEVEGLEKEKLSLELAKNRKNLQEADVMADIRRQQKELAAELDYLIDDIHDVEDDRDVWKRQLHVESSCATALQAQRFEALTNLKARFGEDAVDRAAFATAVFKDEDEARGLEGCS-------------------------------------GVSILG--------IAEALRPVYKPD-DKE--------FSKEAVLEA-VEECGI 1050
            F+D+EAL+E++Q LRAE + LS  E  L  +L+ A+A LS +R +   LS A  L+ V+           +G++   S++N  +GGR   +S++              R E  NF A DR+MELE+LN+QLRKGQA AE  A   +A  R T+ E+ +  +RL ++PKRFT+SLQ L DEVE LE+EK  LELAK RK  +EAD++A  +RQQ  L  EL  L+D+I DVEDDRD WKR+L VE++   +L++QR EAL  L+ RFG DAV+R AFA      +   +GL   S                                     G S LG        I++AL+PVY PD D +         + EAV EA + ECGI
Sbjct:   65 FYDKEALQEQLQGLRAEGIDLSEKEARLGFRLAKAQATLSRMREKMVGLSQAKMLDEVMSVFPARAADVSVGKKHRESESNGDYGGRREARSQQ--------------RHEETNFAAQDRVMELELLNSQLRKGQAEAERNAKLQEATFRSTRAEVNKVAERLKAMPKRFTQSLQSLQDEVETLEREKFDLELAKERKTSKEADLLASAKRQQSYLGEELSSLLDEIDDVEDDRDRWKRRLRVETTRTESLRSQREEALRALRERFGSDAVERVAFARFATGPKGSGKGLMTLSRRGRRGGRGTGSDRDEEDDYEDGDHDSGERDDSGERGGFSDLGSPKILVSMISKALKPVYGPDCDHDGGGEGFALLTDEAVAEAALSECGI 435
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16952.3892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7D4_ECTSI1.740e-5346.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3E6_9PHAE2.950e-5340.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16952contigH-paniculata_contig16952:3147..4952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_003230.1
Exons3
Model size1053
Cds size1053
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16952.3892.1prot_H-paniculata_contig16952.3892.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16952 3147..4952 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929341.4185247-CDS-H-paniculata_contig16952:3146..35481622929341.4185247-CDS-H-paniculata_contig16952:3146..3548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16952 3147..3548 +
1691480822.1989672-CDS-H-paniculata_contig16952:3146..35481691480822.1989672-CDS-H-paniculata_contig16952:3146..3548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16952 3147..3548 +
1622929341.4282126-CDS-H-paniculata_contig16952:3797..40581622929341.4282126-CDS-H-paniculata_contig16952:3797..4058Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16952 3798..4058 +
1691480822.2073154-CDS-H-paniculata_contig16952:3797..40581691480822.2073154-CDS-H-paniculata_contig16952:3797..4058Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16952 3798..4058 +
1622929341.4383743-CDS-H-paniculata_contig16952:4562..49521622929341.4383743-CDS-H-paniculata_contig16952:4562..4952Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16952 4563..4952 +
1691480822.217016-CDS-H-paniculata_contig16952:4562..49521691480822.217016-CDS-H-paniculata_contig16952:4562..4952Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16952 4563..4952 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16952.3892.1

>prot_H-paniculata_contig16952.3892.1 ID=prot_H-paniculata_contig16952.3892.1|Name=mRNA_H-paniculata_contig16952.3892.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=351bp
YSDSSPPKTAAFDEHRSPMPCRHQLPSFHDREALEEKMQQLRAEELRLSA
TEEDLKEKLSHAEAALSAIRSEKRELSTANTLNAVVEGQQYMGRRTMSKN
NVKWGGRSSVKSERNINSEGNGDERLKRREELVNFEATDRIMELEVLNNQ
LRKGQANAESEASSNDAAARLTQGELERAEKRLNSIPKRFTESLQMLHDE
VEGLEKEKLSLELAKNRKNLQEADVMADIRRQQKELAAELDYLIDDIHDV
EDDRDVWKRQLHVESSCATALQAQRFEALTNLKARFGEDAVDRAAFATAV
FKDEDEARGLEGCSGVSILGIAEALRPVYKPDDKEFSKEAVLEAVEECGI
K
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mRNA from alignment at H-paniculata_contig16952:3147..4952+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16952.3892.1 ID=mRNA_H-paniculata_contig16952.3892.1|Name=mRNA_H-paniculata_contig16952.3892.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1806bp|location=Sequence derived from alignment at H-paniculata_contig16952:3147..4952+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACAGCGATTCGTCTCCACCGAAAACAGCAGCATTTGACGAGCACCGTAG
TCCTATGCCATGCCGTCATCAACTTCCGTCGTTCCATGATCGCGAGGCCC
TCGAAGAGAAAATGCAGCAGCTTCGAGCTGAAGAACTGCGTCTTTCCGCC
ACGGAAGAAGACCTGAAAGAGAAGCTAAGTCATGCGGAGGCGGCACTCTC
AGCAATACGGTCCGAAAAGCGCGAGCTGTCGACAGCGAATACATTGAATG
CGGTCGTAGAGGGGCAGCAGTACATGGGGCGGAGAACAATGAGCAAAAAC
AACGTGAAGTGGGGCGGAAGGAGTTCTGTGAAGAGCGAGAGAAATATTAA
CAGCGAAGGAAACGGGGATGAGCGTTTAAAGCGTCGGGAGGAACTAGTGA
ATGTAAGGCCCTCATGTGTGTGCGCGCGTTGTAGGGGAGAAATGTTAGAA
TCACACGTTCGTTTTTTTAGTATAGCATGGCCACTCCTCCGAAGACTAAG
TTACGTTGTCGTATGTAAGCACAAAACTCTATCGCCTGCTCAAATCATCT
GATGTAGGGTGTACCTGGAGGAAAGACATGCTCTATGATGTGCGGGTATT
GAAGTACGTCCCGCCTGAGTCGCAAATTCCGTGCCCATTTGTGTGGTACA
GTTTGAGGCAACAGATAGAATCATGGAGTTGGAAGTACTAAACAATCAGC
TGAGGAAAGGACAAGCGAATGCGGAAAGCGAAGCCAGTTCCAACGACGCA
GCCGCGCGTTTGACGCAAGGAGAGCTCGAGAGGGCTGAAAAGAGGTTGAA
CTCCATACCGAAACGCTTCACTGAAAGCCTGCAAATGTTGCATGACGAAG
TCGAAGGTTTGGAGAAGGAGAAACTATCCCTTGAACTCGCGAAGAACAGG
AAGAATCTGCAGGTGATAACTCGGCCGTCCGTCCAACACTCGGCTCACAA
ACTCTTGTCCGACCCTTAACGAACAGTGCTTTTTAACACGTGTTGTCCGA
TTTCTACCCTCTTTAATGCGTGCTGCCTTCTCGAAGAAGCGAGCCATTTT
TACTTCAATATGCTATATCCTCTTTTGGTGGAGATATACCGGCTGTCGCG
AATATACATATAACATTGCACACAATAAACGGTTATAGGATCAAACGCAT
CGGCGTCGTTGGGAGTAAATGGCAATCTCCCACAAGTATCCCTCTCTCTC
CTACCTTTGTCGCTCAACGTGCGAGTACCGCTCGATAAATTATACAAGTA
AGGCGGCAGCGCTAGCTACAGAACTCAACAGATTGCCAGAACGATAGTGT
AGGCGCATGAATAAATATAATTAAATCCTTCTTTACACCTCCCTGCCCTC
GCCGACAACGCACCGATATCCCTCAATACGTGCTGAAACAAATTACGACT
CATGGCATTCATTCAGGAAGCAGATGTTATGGCGGATATCAGACGGCAGC
AAAAGGAATTAGCAGCAGAACTAGACTACCTCATTGACGACATACACGAC
GTGGAGGATGACCGAGATGTATGGAAGCGACAGCTTCACGTAGAATCGTC
TTGCGCGACAGCATTGCAAGCTCAACGATTCGAGGCGCTAACTAACCTAA
AAGCCCGCTTCGGGGAGGACGCAGTGGATCGCGCAGCATTTGCCACGGCT
GTATTTAAAGACGAAGATGAGGCTCGGGGGCTGGAGGGGTGTAGCGGTGT
TTCAATTTTGGGTATAGCCGAGGCGTTGCGGCCAGTGTACAAGCCGGATG
ATAAGGAGTTCTCCAAGGAGGCTGTGCTTGAGGCAGTTGAGGAGTGCGGA
ATAAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig16952:3147..4952+

>mRNA_H-paniculata_contig16952.3892.1 ID=mRNA_H-paniculata_contig16952.3892.1|Name=mRNA_H-paniculata_contig16952.3892.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2106bp|location=Sequence derived from alignment at H-paniculata_contig16952:3147..4952+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACAGCGATTCGTCTCCACCGAAAACAGCAGCATTTGACGAGCACCGTAG
TCCTATGCCATGCCGTCATCAACTTCCGTCGTTCCATGATCGCGAGGCCC
TCGAAGAGAAAATGCAGCAGCTTCGAGCTGAAGAACTGCGTCTTTCCGCC
ACGGAAGAAGACCTGAAAGAGAAGCTAAGTCATGCGGAGGCGGCACTCTC
AGCAATACGGTCCGAAAAGCGCGAGCTGTCGACAGCGAATACATTGAATG
CGGTCGTAGAGGGGCAGCAGTACATGGGGCGGAGAACAATGAGCAAAAAC
AACGTGAAGTGGGGCGGAAGGAGTTCTGTGAAGAGCGAGAGAAATATTAA
CAGCGAAGGAAACGGGGATGAGCGTTTAAAGCGTCGGGAGGAACTAGTGA
ATTACAGCGATTCGTCTCCACCGAAAACAGCAGCATTTGACGAGCACCGT
AGTCCTATGCCATGCCGTCATCAACTTCCGTCGTTCCATGATCGCGAGGC
CCTCGAAGAGAAAATGCAGCAGCTTCGAGCTGAAGAACTGCGTCTTTCCG
CCACGGAAGAAGACCTGAAAGAGAAGCTAAGTCATGCGGAGGCGGCACTC
TCAGCAATACGGTCCGAAAAGCGCGAGCTGTCGACAGCGAATACATTGAA
TGCGGTCGTAGAGGGGCAGCAGTACATGGGGCGGAGAACAATGAGCAAAA
ACAACGTGAAGTGGGGCGGAAGGAGTTCTGTGAAGAGCGAGAGAAATATT
AACAGCGAAGGAAACGGGGATGAGCGTTTAAAGCGTCGGGAGGAACTAGT
GAATTTTGAGGCAACAGATAGAATCATGGAGTTGGAAGTACTAAACAATC
AGCTGAGGAAAGGACAAGCGAATGCGGAAAGCGAAGCCAGTTCCAACGAC
GCAGCCGCGCGTTTGACGCAAGGAGAGCTCGAGAGGGCTGAAAAGAGGTT
GAACTCCATACCGAAACGCTTCACTGAAAGCCTGCAAATGTTGCATGACG
AAGTCGAAGGTTTGGAGAAGGAGAAACTATCCCTTGAACTCGCGAAGAAC
AGGAAGAATCTGCAGTTTGAGGCAACAGATAGAATCATGGAGTTGGAAGT
ACTAAACAATCAGCTGAGGAAAGGACAAGCGAATGCGGAAAGCGAAGCCA
GTTCCAACGACGCAGCCGCGCGTTTGACGCAAGGAGAGCTCGAGAGGGCT
GAAAAGAGGTTGAACTCCATACCGAAACGCTTCACTGAAAGCCTGCAAAT
GTTGCATGACGAAGTCGAAGGTTTGGAGAAGGAGAAACTATCCCTTGAAC
TCGCGAAGAACAGGAAGAATCTGCAGGAAGCAGATGTTATGGCGGATATC
AGACGGCAGCAAAAGGAATTAGCAGCAGAACTAGACTACCTCATTGACGA
CATACACGACGTGGAGGATGACCGAGATGTATGGAAGCGACAGCTTCACG
TAGAATCGTCTTGCGCGACAGCATTGCAAGCTCAACGATTCGAGGCGCTA
ACTAACCTAAAAGCCCGCTTCGGGGAGGACGCAGTGGATCGCGCAGCATT
TGCCACGGCTGTATTTAAAGACGAAGATGAGGCTCGGGGGCTGGAGGGGT
GTAGCGGTGTTTCAATTTTGGGTATAGCCGAGGCGTTGCGGCCAGTGTAC
AAGCCGGATGATAAGGAGTTCTCCAAGGAGGCTGTGCTTGAGGCAGTTGA
GGAGTGCGGAATAAAAGAAGCAGATGTTATGGCGGATATCAGACGGCAGC
AAAAGGAATTAGCAGCAGAACTAGACTACCTCATTGACGACATACACGAC
GTGGAGGATGACCGAGATGTATGGAAGCGACAGCTTCACGTAGAATCGTC
TTGCGCGACAGCATTGCAAGCTCAACGATTCGAGGCGCTAACTAACCTAA
AAGCCCGCTTCGGGGAGGACGCAGTGGATCGCGCAGCATTTGCCACGGCT
GTATTTAAAGACGAAGATGAGGCTCGGGGGCTGGAGGGGTGTAGCGGTGT
TTCAATTTTGGGTATAGCCGAGGCGTTGCGGCCAGTGTACAAGCCGGATG
ATAAGGAGTTCTCCAAGGAGGCTGTGCTTGAGGCAGTTGAGGAGTGCGGA
ATAAAA
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