mRNA_H-paniculata_contig16950.3891.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16950.3891.1
Unique NamemRNA_H-paniculata_contig16950.3891.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16950.3891.1 vs. uniprot
Match: D7FQT5_ECTSI (SRP101, alpha subunit of the signal recognition particle receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT5_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 5.690e-18
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:   19 LQNNEPLMRALSKLINENEPNLVLFVGEALVGNDGVNQLAMFNQVCA 159
            +QNNEPLMRALSKLINENEP LVLFVGEALVGNDGVNQL MFNQ  A
Sbjct:  477 MQNNEPLMRALSKLINENEPELVLFVGEALVGNDGVNQLQMFNQALA 523
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BLAST of mRNA_H-paniculata_contig16950.3891.1 vs. uniprot
Match: A0A444DVV9_ENSVE (Uncharacterized protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444DVV9_ENSVE)

HSP 1 Score: 75.5 bits (184), Expect = 7.520e-16
Identity = 40/53 (75.47%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    7 FCLLL----QNNEPLMRALSKLINENEPNLVLFVGEALVGNDGVNQLAMFNQV 153
            FC+LL    Q+NEPLMRALSKLIN N P+LVLFVGEALVGND V+QL  FNQV
Sbjct:  101 FCILLPVASQDNEPLMRALSKLINLNNPDLVLFVGEALVGNDAVDQLTKFNQV 153
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BLAST of mRNA_H-paniculata_contig16950.3891.1 vs. uniprot
Match: A0A5K1FVJ2_9MAGN (Uncharacterized protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1FVJ2_9MAGN)

HSP 1 Score: 70.5 bits (171), Expect = 6.870e-15
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:   25 NNEPLMRALSKLINENEPNLVLFVGEALVGNDGVNQLAMFNQV 153
            +NEPLMRALSKLIN N P+LVLFVGEALVGND V+QL+ FNQV
Sbjct:    1 DNEPLMRALSKLINLNSPDLVLFVGEALVGNDAVDQLSKFNQV 43
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BLAST of mRNA_H-paniculata_contig16950.3891.1 vs. uniprot
Match: H3G7F3_PHYRM (SRP54 domain-containing protein n=23 Tax=Phytophthora TaxID=4783 RepID=H3G7F3_PHYRM)

HSP 1 Score: 76.3 bits (186), Expect = 7.430e-15
Identity = 35/47 (74.47%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:   19 LQNNEPLMRALSKLINENEPNLVLFVGEALVGNDGVNQLAMFNQVCA 159
            +QNNEPLMRAL+KL++ NEP+LVLFVGEALVGNDG++QLAMF++  A
Sbjct:  490 MQNNEPLMRALAKLVSNNEPDLVLFVGEALVGNDGIDQLAMFDRALA 536
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BLAST of mRNA_H-paniculata_contig16950.3891.1 vs. uniprot
Match: A0A662XUH7_9STRA (SRP54 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XUH7_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 7.430e-15
Identity = 35/47 (74.47%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:   19 LQNNEPLMRALSKLINENEPNLVLFVGEALVGNDGVNQLAMFNQVCA 159
            +QNNEPLMRAL+KL++ NEP+LVLFVGEALVGNDG++QLAMF++  A
Sbjct:  485 MQNNEPLMRALAKLVSNNEPDLVLFVGEALVGNDGIDQLAMFDRALA 531
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BLAST of mRNA_H-paniculata_contig16950.3891.1 vs. uniprot
Match: A0A176WI44_MARPO (SRP54 domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WI44_MARPO)

HSP 1 Score: 75.9 bits (185), Expect = 1.020e-14
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   19 LQNNEPLMRALSKLINENEPNLVLFVGEALVGNDGVNQLAMFNQVCA 159
            +Q+NEPLMRALSKLIN NEP+LVLFVGEALVGNDGV+QL  FNQ  A
Sbjct:  529 MQDNEPLMRALSKLINVNEPDLVLFVGEALVGNDGVDQLMKFNQSLA 575
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BLAST of mRNA_H-paniculata_contig16950.3891.1 vs. uniprot
Match: A0A0P1B7H3_PLAHL (Signal recognition particle receptor subunit alpha n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B7H3_PLAHL)

HSP 1 Score: 75.5 bits (184), Expect = 1.390e-14
Identity = 34/47 (72.34%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:   19 LQNNEPLMRALSKLINENEPNLVLFVGEALVGNDGVNQLAMFNQVCA 159
            +QNNEPLMRAL+KL+++NEP+LVLFVGEALVGNDG++QL+MF++  A
Sbjct:  490 MQNNEPLMRALAKLVSKNEPDLVLFVGEALVGNDGIDQLSMFDRALA 536
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BLAST of mRNA_H-paniculata_contig16950.3891.1 vs. uniprot
Match: A0A2K1IZA8_PHYPA (SRP54 domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IZA8_PHYPA)

HSP 1 Score: 75.5 bits (184), Expect = 1.390e-14
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   19 LQNNEPLMRALSKLINENEPNLVLFVGEALVGNDGVNQLAMFNQVCA 159
            +Q+NEPLMRALSKLIN N+P+LVLFVGEALVGNDGV+QL  FNQ  A
Sbjct:  538 MQDNEPLMRALSKLINMNDPDLVLFVGEALVGNDGVHQLTQFNQKLA 584
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BLAST of mRNA_H-paniculata_contig16950.3891.1 vs. uniprot
Match: A0A3M6VSC8_9STRA (SRP54 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VSC8_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.900e-14
Identity = 34/47 (72.34%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:   19 LQNNEPLMRALSKLINENEPNLVLFVGEALVGNDGVNQLAMFNQVCA 159
            +QNNEPLMRAL+KL++ NEP+LVLFVGEALVGNDG++QL+MF++  A
Sbjct:  488 MQNNEPLMRALAKLVSNNEPDLVLFVGEALVGNDGIDQLSMFDRALA 534
[Close]
BLAST of mRNA_H-paniculata_contig16950.3891.1 vs. uniprot
Match: A0A4U5LVN4_STECR (SRP54 domain-containing protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U5LVN4_STECR)

HSP 1 Score: 75.1 bits (183), Expect = 1.900e-14
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   19 LQNNEPLMRALSKLINENEPNLVLFVGEALVGNDGVNQLAMFNQVCA 159
            +QNNEPLMRALSKLIN+N+P+LVLFVGEALVGN+ V+QL  FNQ  A
Sbjct:  531 MQNNEPLMRALSKLINDNKPDLVLFVGEALVGNEAVDQLVKFNQALA 577
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16950.3891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQT5_ECTSI5.690e-1889.36SRP101, alpha subunit of the signal recognition pa... [more]
A0A444DVV9_ENSVE7.520e-1675.47Uncharacterized protein n=1 Tax=Ensete ventricosum... [more]
A0A5K1FVJ2_9MAGN6.870e-1581.40Uncharacterized protein (Fragment) n=1 Tax=Nymphae... [more]
H3G7F3_PHYRM7.430e-1574.47SRP54 domain-containing protein n=23 Tax=Phytophth... [more]
A0A662XUH7_9STRA7.430e-1574.47SRP54 domain-containing protein n=2 Tax=Nothophyto... [more]
A0A176WI44_MARPO1.020e-1480.85SRP54 domain-containing protein n=2 Tax=Marchantia... [more]
A0A0P1B7H3_PLAHL1.390e-1472.34Signal recognition particle receptor subunit alpha... [more]
A0A2K1IZA8_PHYPA1.390e-1478.72SRP54 domain-containing protein n=2 Tax=Physcomitr... [more]
A0A3M6VSC8_9STRA1.900e-1472.34SRP54 domain-containing protein n=2 Tax=Peronospor... [more]
A0A4U5LVN4_STECR1.900e-1476.60SRP54 domain-containing protein n=1 Tax=Steinernem... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16950contigH-paniculata_contig16950:483..647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue5e-15
Seed eggNOG ortholog2880.D7FQT5
Preferred nameSRPR
KEGG koko:K06640,ko:K13431,ko:K21989
KEGG TC3.A.5.8
KEGG Pathwayko03060,ko03460,ko04110,ko04115,ko04214,ko04218,ko05165,ko05166,map03060,map03460,map04110,map04115,map04214,map04218,map05165,map05166
KEGG ModuleM00691
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0000902,GO:0000904,GO:0001882,GO:0001883,GO:0002791,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005047,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005785,GO:0005789,GO:0005791,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006810,GO:0006886,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007409,GO:0008104,GO:0008150,GO:0009653,GO:0009987,GO:0010033,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022008,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0030867,GO:0030968,GO:0031090,GO:0031175,GO:0031984,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032880,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0034620,GO:0034976,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0036498,GO:0042175,GO:0042221,GO:0042886,GO:0043021,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046907,GO:0048468,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050708,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051179,GO:0051223,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0061564,GO:0065007,GO:0070201,GO:0070727,GO:0070887,GO:0070972,GO:0071310,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090087,GO:0090150,GO:0097159,GO:0097367,GO:0098588,GO:0098796,GO:0098827,GO:0120036,GO:0120039,GO:1901265,GO:1901363,GO:1903530
EggNOG free text desc.signal recognition particle binding
EggNOG OGsCOG0552@1,KOG0781@2759
EC2.7.11.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02000,ko02044,ko03400
Exons1
Model size165
Cds size165
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929341.378703-CDS-H-paniculata_contig16950:482..6471622929341.378703-CDS-H-paniculata_contig16950:482..647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16950 483..647 -
1691480822.1884365-CDS-H-paniculata_contig16950:482..6471691480822.1884365-CDS-H-paniculata_contig16950:482..647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16950 483..647 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16950.3891.1prot_H-paniculata_contig16950.3891.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16950 483..647 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16950.3891.1

>prot_H-paniculata_contig16950.3891.1 ID=prot_H-paniculata_contig16950.3891.1|Name=mRNA_H-paniculata_contig16950.3891.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
MCFCLLLQNNEPLMRALSKLINENEPNLVLFVGEALVGNDGVNQLAMFNQ
VCAR*
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mRNA from alignment at H-paniculata_contig16950:483..647-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16950.3891.1 ID=mRNA_H-paniculata_contig16950.3891.1|Name=mRNA_H-paniculata_contig16950.3891.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at H-paniculata_contig16950:483..647- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTTTCTGTCTGCTTTTGCAGAACAACGAGCCCTTGATGCGCGCTCT
GAGCAAGCTGATCAACGAAAACGAGCCCAACCTTGTGCTGTTCGTGGGCG
AAGCACTCGTGGGAAACGATGGCGTCAATCAATTGGCCATGTTCAACCAG
GTGTGTGCCAGATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig16950:483..647-

>mRNA_H-paniculata_contig16950.3891.1 ID=mRNA_H-paniculata_contig16950.3891.1|Name=mRNA_H-paniculata_contig16950.3891.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig16950:483..647- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTTTCTGTCTGCTTTTGCAGAACAACGAGCCCTTGATGCGCGCTCT
GAGCAAGCTGATCAACGAAAACGAGCCCAACCTTGTGCTGTTCGTGGGCG
AAGCACTCGTGGGAAACGATGGCGTCAATCAATTGGCCATGTTCAACCAG
GTGTGTGCCAGATGAATGTGTTTCTGTCTGCTTTTGCAGAACAACGAGCC
CTTGATGCGCGCTCTGAGCAAGCTGATCAACGAAAACGAGCCCAACCTTG
TGCTGTTCGTGGGCGAAGCACTCGTGGGAAACGATGGCGTCAATCAATTG
GCCATGTTCAACCAGGTGTGTGCCAGATGA
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