mRNA_H-paniculata_contig1695.3890.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1695.3890.1
Unique NamemRNA_H-paniculata_contig1695.3890.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1695.3890.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 9.810e-22
Identity = 49/110 (44.55%), Postives = 71/110 (64.55%), Query Frame = 2 
Query:    2 RIVRMNKAMYGLRQAGRMWSKRLVEVLVNNVGMTQSKFDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDFLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGVVRIT 328
            +IV+  +A+YGL+Q+GR W   + + LV N G  Q K DPCVFR   + VV MI+ ++VDD++VAG    C+ L A+L  +F T   GE +W+ GCA  RD+  G +RI+
Sbjct:  910 KIVKAERAIYGLKQSGRQWGYHVADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIMIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRIS 1018
[Close]
BLAST of mRNA_H-paniculata_contig1695.3890.1 vs. uniprot
Match: A0A6H5KSR8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR8_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 5.490e-21
Identity = 48/110 (43.64%), Postives = 69/110 (62.73%), Query Frame = 2 
Query:    2 RIVRMNKAMYGLRQAGRMWSKRLVEVLVNNVGMTQSKFDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDFLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGVVRIT 328
            +IV+  +A+YGL+Q+GR W     + LV N G  Q K DPCVFR   + VV MI+ ++VDD++VAG    C+ L A+L  +F T   GE +W+ GCA  RD+  G + I+
Sbjct:   44 KIVKAERALYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLSIS 152
[Close]
BLAST of mRNA_H-paniculata_contig1695.3890.1 vs. uniprot
Match: A0A6H5KMJ1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ1_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.710e-19
Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = 2 
Query:    2 RIVRMNKAMYGLRQAGRMWSKRLVEVLVNNVGMTQSKFDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDFLFAALRAEFQTTR-GELKWYLGCAFWRDI 304
            ++V+  +A+YGL+Q+GR W     + LV N G  Q K DPCVFR   + VV MI+ ++VDD++VAG    C+ L A+L  +F T   GE +W+ GCA  RD+
Sbjct:  310 KVVKAERAVYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTNNLGECQWFDGCAIERDV 410
[Close]
BLAST of mRNA_H-paniculata_contig1695.3890.1 vs. uniprot
Match: A0A6H5JSK5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK5_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.560e-19
Identity = 47/110 (42.73%), Postives = 67/110 (60.91%), Query Frame = 2 
Query:    2 RIVRMNKAMYGLRQAGRMWSKRLVEVLVNNVGMTQSKFDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDFLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGVVRIT 328
            +IV+  +A+YGL+Q+GR W   + + LV N G  Q K DPCVF    N VV +I+ ++VDD++VAG    C+ L A+L  +F T   GE +W  GCA  RD+  G   I+
Sbjct:  473 KIVKAERAIYGLKQSGRQWGYHVADTLVEN-GFEQCKADPCVFCKMVNEVVVLIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGEREWSDGCAIERDVQAGTFHIS 581
[Close]
BLAST of mRNA_H-paniculata_contig1695.3890.1 vs. uniprot
Match: A0A6H5JRE9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE9_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 6.750e-19
Identity = 47/110 (42.73%), Postives = 68/110 (61.82%), Query Frame = 2 
Query:    2 RIVRMNKAMYGLRQAGRMWSKRLVEVLVNNVGMTQSKFDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDFLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGVVRIT 328
            +IV+  +A+YGL+Q+GR +     +  V N G  Q K DPCVFR   + VV MI+ ++VDD++VAG    C+ L A+L   F T   GE +W+ GCA  RD+  G +RI+
Sbjct:  814 KIVKAERAIYGLKQSGRQFGYHAADTQVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKMFPTKNLGECEWFDGCAIERDVEAGTLRIS 922
[Close]
BLAST of mRNA_H-paniculata_contig1695.3890.1 vs. uniprot
Match: A0A6H5JJ03_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ03_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.680e-18
Identity = 48/110 (43.64%), Postives = 65/110 (59.09%), Query Frame = 2 
Query:    2 RIVRMNKAMYGLRQAGRMWSKRLVEVLVNNVGMTQSKFDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDFLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGVVRIT 328
            +IV+  +A+YGL+Q+GR W     + LV N G  Q K DPCVFR   + VV MI  ++VDD +VAG    C+   A L  +F TT  GE +W+ G A  RD+  G  RI+
Sbjct:  486 KIVKTERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMITVIYVDDNLVAGSDEGCEEFLACLNKKFPTTNLGECEWFDGYAIERDVEAGTYRIS 594
[Close]
BLAST of mRNA_H-paniculata_contig1695.3890.1 vs. uniprot
Match: A0A6H5L5Z0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Z0_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 5.040e-18
Identity = 44/110 (40.00%), Postives = 66/110 (60.00%), Query Frame = 2 
Query:    2 RIVRMNKAMYGLRQAGRMWSKRLVEVLVNNVGMTQSKFDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDFLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGVVRIT 328
            +IV+  +A+YGL+Q+GR W     + LV   G  Q K DPCVFR   + VV M + ++VDD++VA     C+ L A+L  +F T   GE +W+ GC   RD+  G ++I+
Sbjct:   44 KIVKAERAIYGLKQSGRQWGYHAADTLVEK-GFEQCKVDPCVFRKMVDEVVVMTIVIYVDDILVAWSDEDCEELLASLNKKFLTKNLGECEWFDGCTIERDVEAGTLKIS 152
[Close]
BLAST of mRNA_H-paniculata_contig1695.3890.1 vs. uniprot
Match: A0A6H5KS88_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS88_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.280e-17
Identity = 46/110 (41.82%), Postives = 66/110 (60.00%), Query Frame = 2 
Query:    2 RIVRMNKAMYGLRQAGRMWSKRLVEVLVNNVGMTQSKFDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDFLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGVVRIT 328
            +IVR+NK++YGL+QA R + KRLV  L+  +G  QS  DPCV R      V  I+ +HVDD++ AG     + +  AL     T   GE++++LGCAF RD   G + I+
Sbjct:    4 KIVRLNKSLYGLKQASRTFYKRLVSDLLR-IGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIAEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEIS 112
[Close]
BLAST of mRNA_H-paniculata_contig1695.3890.1 vs. uniprot
Match: A0A6H5KWC4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWC4_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 3.650e-17
Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 2 
Query:    2 RIVRMNKAMYGLRQAGRMWSKRLVEVLVNNVGMTQSKFDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDFLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGVVRI 325
            +IV+  +A+YGL+Q+GR W     + LV N G  Q   +PCV+R   + VV MI+ + VDD++VAG    C+ L A+L  +F T   GE + + GCA  RD+  G +RI
Sbjct:   44 KIVKAERAIYGLKQSGRQWGYHAADTLVEN-GYEQCMANPCVYRKMVDEVVVMIIVIFVDDILVAGSDEDCEELVASLNKKFPTKNLGECQGFYGCAIERDVDAGTLRI 151
[Close]
BLAST of mRNA_H-paniculata_contig1695.3890.1 vs. uniprot
Match: A0A6H5KU29_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU29_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 4.680e-17
Identity = 46/110 (41.82%), Postives = 62/110 (56.36%), Query Frame = 2 
Query:    2 RIVRMNKAMYGLRQAGRMWSKRLVEVLVNNVGMTQSKFDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDFLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGVVRIT 328
            ++V+  +A+YGL+Q+GR W     + LV N G  Q K DPCVFR  K+ VV      +VDD++VAG    C  L  +L   F T   GE  W+ GCA  RD   G +RI+
Sbjct:  258 KVVKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMKDDVVVXXXXXYVDDILVAGSDDDCKELLDSLNKAFPTKDLGECVWFDGCAVERDPEAGTIRIS 366
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1695.3890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1N9_9PHAE9.810e-2244.55Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KSR8_9PHAE5.490e-2143.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KMJ1_9PHAE1.710e-1944.12Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JSK5_9PHAE3.560e-1942.73Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRE9_9PHAE6.750e-1942.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JJ03_9PHAE1.680e-1843.64Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L5Z0_9PHAE5.040e-1840.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KS88_9PHAE2.280e-1741.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KWC4_9PHAE3.650e-1741.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KU29_9PHAE4.680e-1741.82Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1695contigH-paniculata_contig1695:195..522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score64.7
Seed ortholog evalue2.9e-08
Seed eggNOG ortholog1108849.XP_002556819.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs20PDK@147545,38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelEurotiomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size329
Cds size315
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929341.3121161-UTR-H-paniculata_contig1695:194..2071622929341.3121161-UTR-H-paniculata_contig1695:194..207Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1695 195..207 +
1691480822.1604521-UTR-H-paniculata_contig1695:194..2071691480822.1604521-UTR-H-paniculata_contig1695:194..207Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1695 195..207 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929341.3322601-CDS-H-paniculata_contig1695:207..5221622929341.3322601-CDS-H-paniculata_contig1695:207..522Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1695 208..522 +
1691480822.1761255-CDS-H-paniculata_contig1695:207..5221691480822.1761255-CDS-H-paniculata_contig1695:207..522Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1695 208..522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1695.3890.1prot_H-paniculata_contig1695.3890.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1695 208..522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1695.3890.1

>prot_H-paniculata_contig1695.3890.1 ID=prot_H-paniculata_contig1695.3890.1|Name=mRNA_H-paniculata_contig1695.3890.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MNKAMYGLRQAGRMWSKRLVEVLVNNVGMTQSKFDPCVFRLEKNGVVDMI
LCVHVDDVIVAGKSVKCDFLFAALRAEFQTTRGELKWYLGCAFWRDIVRG
VVRIT
back to top

mRNA from alignment at H-paniculata_contig1695:195..522+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1695.3890.1 ID=mRNA_H-paniculata_contig1695.3890.1|Name=mRNA_H-paniculata_contig1695.3890.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=328bp|location=Sequence derived from alignment at H-paniculata_contig1695:195..522+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TAGGATTGTAAGGATGAATAAGGCTATGTATGGGCTCAGGCAGGCAGGGC
GGATGTGGTCAAAGCGCCTTGTAGAAGTACTCGTAAACAACGTCGGCATG
ACGCAATCCAAGTTTGACCCTTGTGTGTTTAGGCTCGAGAAAAATGGGGT
AGTAGATATGATTCTGTGTGTTCATGTAGACGATGTAATTGTTGCTGGTA
AAAGTGTGAAGTGCGATTTCCTGTTTGCGGCGTTGAGGGCGGAGTTCCAA
ACCACGAGAGGCGAGCTCAAGTGGTACCTGGGTTGCGCATTTTGGCGTGA
CATAGTCAGGGGAGTTGTCCGCATCACG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1695:195..522+

>mRNA_H-paniculata_contig1695.3890.1 ID=mRNA_H-paniculata_contig1695.3890.1|Name=mRNA_H-paniculata_contig1695.3890.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig1695:195..522+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATAAGGCTATGTATGGGCTCAGGCAGGCAGGGCGGATGTGGTCAAA
GCGCCTTGTAGAAGTACTCGTAAACAACGTCGGCATGACGCAATCCAAGT
TTGACCCTTGTGTGTTTAGGCTCGAGAAAAATGGGGTAGTAGATATGATT
CTGTGTGTTCATGTAGACGATGTAATTGTTGCTGGTAAAAGTGTGAAGTG
CGATTTCCTGTTTGCGGCGTTGAGGGCGGAGTTCCAAACCACGAGAGGCG
AGCTCAAGTGGTACCTGGGTTGCGCATTTTGGCGTGACATAGTCAGGGGA
GTTGTCCGCATCACGATGAATAAGGCTATGTATGGGCTCAGGCAGGCAGG
GCGGATGTGGTCAAAGCGCCTTGTAGAAGTACTCGTAAACAACGTCGGCA
TGACGCAATCCAAGTTTGACCCTTGTGTGTTTAGGCTCGAGAAAAATGGG
GTAGTAGATATGATTCTGTGTGTTCATGTAGACGATGTAATTGTTGCTGG
TAAAAGTGTGAAGTGCGATTTCCTGTTTGCGGCGTTGAGGGCGGAGTTCC
AAACCACGAGAGGCGAGCTCAAGTGGTACCTGGGTTGCGCATTTTGGCGT
GACATAGTCAGGGGAGTTGTCCGCATCACG
back to top