mRNA_H-paniculata_contig16947.3889.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16947.3889.1
Unique NamemRNA_H-paniculata_contig16947.3889.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16947.3889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16947contigH-paniculata_contig16947:2503..3430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size461
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929341.2459614-CDS-H-paniculata_contig16947:2504..28251622929341.2459614-CDS-H-paniculata_contig16947:2504..2825Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16947 2505..2825 -
1691480822.1402793-CDS-H-paniculata_contig16947:2504..28251691480822.1402793-CDS-H-paniculata_contig16947:2504..2825Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16947 2505..2825 -
1622929341.2614708-CDS-H-paniculata_contig16947:3292..34301622929341.2614708-CDS-H-paniculata_contig16947:3292..3430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16947 3293..3430 -
1691480822.1501782-CDS-H-paniculata_contig16947:3292..34301691480822.1501782-CDS-H-paniculata_contig16947:3292..3430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16947 3293..3430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16947.3889.1prot_H-paniculata_contig16947.3889.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16947 2505..3430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16947.3889.1

>prot_H-paniculata_contig16947.3889.1 ID=prot_H-paniculata_contig16947.3889.1|Name=mRNA_H-paniculata_contig16947.3889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp
SSASSLGILVDQALESSAGGFPFDDACGITEPSLHNDSKSAGLEQEISLP
RKQAETQTENERTISREAKASIIKELKNYNKWTRQSSKAKAADRIATARE
KMGIGGTGPRSDQRWWWLCNEEAWSLSRDVTLGCCLNMQSASNSPDAGSR
AIA
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mRNA from alignment at H-paniculata_contig16947:2503..3430-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16947.3889.1 ID=mRNA_H-paniculata_contig16947.3889.1|Name=mRNA_H-paniculata_contig16947.3889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=928bp|location=Sequence derived from alignment at H-paniculata_contig16947:2503..3430- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCAGCGCTTCAAGTCTGGGCATCCTGGTCGACCAGGCGCTTGAATCTAG
CGCAGGAGGCTTTCCGTTTGACGATGCCTGCGGTATCACGGAACCATCCC
TTCACAATGATTCTAAGAGTGCGGGGCTCGAACAGGAGGTGAGACTGGTA
GATTTACAGTGCATGGGTTGTGAAAACTATCATCAGTAATCTTAACTGGT
TTTAATGCTCATACCTGCTTTTTCCTGCGATAATCAGGCGTCGGGGGCGT
TTTGCTCCGCGGAGGAGGGTGACAATCTTACGTTTCGAGCTGGGGAAAAT
AATCCCCCCCTCCCTTGTCAACGGTCTAACAATAAGTACGTGAAAAATAT
GAGTACCCCCCCCCCCCCTTGTCAACGGTCTAACAATAAGTACGTGAAAA
ATATGAGTCCCCCCCCCCCCCTCCCCCTGATTTGGTTGGGTTGCGGAATC
AGCCCCCGCCCCCTCCCCCGTCCAGGTGTTTTATCTAGTCCCTTATTCAA
GGTCTGCTAGACATTCATTCAGCGAAGAATGCCGCACACGTTTCAAATAT
CCACCTCTGCCCCCCCCCTCCCTCTCCCTGCCGTCCTCAATCATGAACGA
ACCAGATAAGTCTGCCGCGTAAACAGGCCGAAACCCAAACCGAAAATGAA
CGCACTATTAGCCGAGAAGCAAAAGCGAGCATCATCAAAGAGCTCAAGAA
TTACAACAAGTGGACACGCCAGTCCAGCAAGGCGAAGGCGGCGGATAGAA
TTGCCACTGCACGGGAAAAAATGGGCATCGGCGGTACTGGTCCCCGTTCA
GATCAGCGGTGGTGGTGGTTGTGCAACGAAGAGGCCTGGAGCTTATCGCG
AGATGTCACACTCGGGTGTTGCTTGAATATGCAATCGGCTTCCAATAGTC
CCGATGCGGGAAGTCGTGCAATTGCGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig16947:2503..3430-

>mRNA_H-paniculata_contig16947.3889.1 ID=mRNA_H-paniculata_contig16947.3889.1|Name=mRNA_H-paniculata_contig16947.3889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig16947:2503..3430- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCAGCGCTTCAAGTCTGGGCATCCTGGTCGACCAGGCGCTTGAATCTAG
CGCAGGAGGCTTTCCGTTTGACGATGCCTGCGGTATCACGGAACCATCCC
TTCACAATGATTCTAAGAGTGCGGGGCTCGAACAGGAGAGCAGCGCTTCA
AGTCTGGGCATCCTGGTCGACCAGGCGCTTGAATCTAGCGCAGGAGGCTT
TCCGTTTGACGATGCCTGCGGTATCACGGAACCATCCCTTCACAATGATT
CTAAGAGTGCGGGGCTCGAACAGGAGATAAGTCTGCCGCGTAAACAGGCC
GAAACCCAAACCGAAAATGAACGCACTATTAGCCGAGAAGCAAAAGCGAG
CATCATCAAAGAGCTCAAGAATTACAACAAGTGGACACGCCAGTCCAGCA
AGGCGAAGGCGGCGGATAGAATTGCCACTGCACGGGAAAAAATGGGCATC
GGCGGTACTGGTCCCCGTTCAGATCAGCGGTGGTGGTGGTTGTGCAACGA
AGAGGCCTGGAGCTTATCGCGAGATGTCACACTCGGGTGTTGCTTGAATA
TGCAATCGGCTTCCAATAGTCCCGATGCGGGAAGTCGTGCAATTGCGATA
AGTCTGCCGCGTAAACAGGCCGAAACCCAAACCGAAAATGAACGCACTAT
TAGCCGAGAAGCAAAAGCGAGCATCATCAAAGAGCTCAAGAATTACAACA
AGTGGACACGCCAGTCCAGCAAGGCGAAGGCGGCGGATAGAATTGCCACT
GCACGGGAAAAAATGGGCATCGGCGGTACTGGTCCCCGTTCAGATCAGCG
GTGGTGGTGGTTGTGCAACGAAGAGGCCTGGAGCTTATCGCGAGATGTCA
CACTCGGGTGTTGCTTGAATATGCAATCGGCTTCCAATAGTCCCGATGCG
GGAAGTCGTGCAATTGCG
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