prot_H-paniculata_contig16943.3888.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig16943.3888.1
Unique Nameprot_H-paniculata_contig16943.3888.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length122
Homology
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BLAST of mRNA_H-paniculata_contig16943.3888.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.080e-7
Identity = 38/106 (35.85%), Postives = 56/106 (52.83%), Query Frame = 0 
Query:   13 RGVKKRAVHDNSAWGKMLNNVQDIFDPKGVMRVLAPHDDMVQFRECFRVRYKYFLVLKDNVCGCNGLPPWFTTGSADSSKRPSVPMELKVLGVLQVSRRINCFDDI 118
            R  ++R  + +SAWG  L N++ +   +   R++    +   FR  FRV +++F    D V         F T + D + R  VP+ELKVLGVLQV  R NCF D+
Sbjct:   33 RETRERPDYSSSAWGVRLANLESL---RIAGRLVPSSREAKAFRSDFRVPHEFFRHFVDLVRTV------FPTATRDVAGRQCVPLELKVLGVLQVLGRGNCFADV 129
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BLAST of mRNA_H-paniculata_contig16943.3888.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.020e-6
Identity = 41/108 (37.96%), Postives = 53/108 (49.07%), Query Frame = 0 
Query:   12 TRGVKKRAVHDNSAWGKMLNNVQDIFDPKGVMRVLAPHDDMVQ-FRECFRVRYKYFLVLKDNVCGCNGLPPWFTTGSADSSKRPSVPMELKVLGVLQVSRRINCFDDI 118
            TR  + R  ++ SAWG  L  ++ +         LA H    + FR  FRV Y++FL   + V       P F     D   R  VP+ELKVLGVLQV  R NCF D+
Sbjct:  130 TRESRPRPDYNKSAWGLRLAQMESL----RCSHNLAQHSREARAFRADFRVPYEFFLEFVEMV------RPVFPAREHDVCGRLCVPLELKVLGVLQVLGRGNCFADV 227
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16943.3888.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JV45_9PHAE2.080e-735.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0H2_9PHAE1.020e-637.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16943contigH-paniculata_contig16943:592..1871 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16943.3888.1mRNA_H-paniculata_contig16943.3888.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig16943 513..1920 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig16943.3888.1 ID=prot_H-paniculata_contig16943.3888.1|Name=mRNA_H-paniculata_contig16943.3888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
MFGREVDKEKATRGVKKRAVHDNSAWGKMLNNVQDIFDPKGVMRVLAPHD
DMVQFRECFRVRYKYFLVLKDNVCGCNGLPPWFTTGSADSSKRPSVPMEL
KVLGVLQVSRRINCFDDIKLP*
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