mRNA_H-paniculata_contig16943.3888.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16943.3888.1
Unique NamemRNA_H-paniculata_contig16943.3888.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16943.3888.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.700e-6
Identity = 38/106 (35.85%), Postives = 56/106 (52.83%), Query Frame = 2 
Query:   86 RGVKKRAVHDNSAWGKMLNNVQDIFDPKGVMRVLAPHDDMVQFRECFRVRYKYFLVLKDNVCGCNGLPPWFTTGSADSSKRPSVPMELKVLGVLQVSRRINCFDDI 403
            R  ++R  + +SAWG  L N++ +   +   R++    +   FR  FRV +++F    D V         F T + D + R  VP+ELKVLGVLQV  R NCF D+
Sbjct:   33 RETRERPDYSSSAWGVRLANLESL---RIAGRLVPSSREAKAFRSDFRVPHEFFRHFVDLVRTV------FPTATRDVAGRQCVPLELKVLGVLQVLGRGNCFADV 129
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BLAST of mRNA_H-paniculata_contig16943.3888.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 8.340e-6
Identity = 41/108 (37.96%), Postives = 53/108 (49.07%), Query Frame = 2 
Query:   83 TRGVKKRAVHDNSAWGKMLNNVQDIFDPKGVMRVLAPHDDMVQ-FRECFRVRYKYFLVLKDNVCGCNGLPPWFTTGSADSSKRPSVPMELKVLGVLQVSRRINCFDDI 403
            TR  + R  ++ SAWG  L  ++ +         LA H    + FR  FRV Y++FL   + V       P F     D   R  VP+ELKVLGVLQV  R NCF D+
Sbjct:  130 TRESRPRPDYNKSAWGLRLAQMESL----RCSHNLAQHSREARAFRADFRVPYEFFLEFVEMV------RPVFPAREHDVCGRLCVPLELKVLGVLQVLGRGNCFADV 227
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16943.3888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JV45_9PHAE1.700e-635.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0H2_9PHAE8.340e-637.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16943contigH-paniculata_contig16943:513..1920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size494
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16943.3888.1prot_H-paniculata_contig16943.3888.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16943 592..1871 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929341.1082063-UTR-H-paniculata_contig16943:512..5911622929341.1082063-UTR-H-paniculata_contig16943:512..591Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16943 513..591 -
1691480822.1013975-UTR-H-paniculata_contig16943:512..5911691480822.1013975-UTR-H-paniculata_contig16943:512..591Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16943 513..591 -
1622929341.200333-UTR-H-paniculata_contig16943:1871..19201622929341.200333-UTR-H-paniculata_contig16943:1871..1920Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16943 1872..1920 -
1691480822.131247-UTR-H-paniculata_contig16943:1871..19201691480822.131247-UTR-H-paniculata_contig16943:1871..1920Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16943 1872..1920 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929341.1604517-CDS-H-paniculata_contig16943:591..6541622929341.1604517-CDS-H-paniculata_contig16943:591..654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16943 592..654 -
1691480822.1107078-CDS-H-paniculata_contig16943:591..6541691480822.1107078-CDS-H-paniculata_contig16943:591..654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16943 592..654 -
1622929341.181224-CDS-H-paniculata_contig16943:1568..18711622929341.181224-CDS-H-paniculata_contig16943:1568..1871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16943 1569..1871 -
1691480822.1224542-CDS-H-paniculata_contig16943:1568..18711691480822.1224542-CDS-H-paniculata_contig16943:1568..1871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16943 1569..1871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16943.3888.1

>prot_H-paniculata_contig16943.3888.1 ID=prot_H-paniculata_contig16943.3888.1|Name=mRNA_H-paniculata_contig16943.3888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
MFGREVDKEKATRGVKKRAVHDNSAWGKMLNNVQDIFDPKGVMRVLAPHD
DMVQFRECFRVRYKYFLVLKDNVCGCNGLPPWFTTGSADSSKRPSVPMEL
KVLGVLQVSRRINCFDDIKLP*
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mRNA from alignment at H-paniculata_contig16943:513..1920-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16943.3888.1 ID=mRNA_H-paniculata_contig16943.3888.1|Name=mRNA_H-paniculata_contig16943.3888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1408bp|location=Sequence derived from alignment at H-paniculata_contig16943:513..1920- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGATGGATGAAATCGATGTCGGAGGGATCAATGACATGGGAGACGCCGTA
TGTTTGGTAGAGAGGTCGACAAGGAAAAGGCGACGCGGGGGGTCAAGAAA
AGGGCCGTCCACGACAATTCGGCGTGGGGGAAGATGCTGAACAACGTACA
AGACATATTTGATCCCAAGGGAGTAATGCGGGTTCTGGCCCCCCACGACG
ACATGGTCCAGTTCAGGGAATGTTTTCGGGTACGGTACAAATATTTTTTG
GTGCTGAAGGACAACGTATGCGGGTGCAACGGACTCCCGCCGTGGTTCAC
AACAGGCTCCGCCGATAGCTCGAAACGGCCCAGTGTTCCCATGGAGCTGA
AGGTGTGTAAAGCAGCGTACGTGACAAGTTTGATTTGACAAGCTTACAGT
ATCACTGTGACTCTTTTGGACTGTCAAGAGTTGCTGTACATGTCACTAGT
CAGACAGTACTGCTGACTGTACGACTAGTCCAATTCACGGTGTCTAAATA
CAGTACATTACACAATCAGTACAACTGGCACATACTGTTCACAACCGCTT
TGATATTTCATATTTCGTTCATCATGTACCTTATTTTATAGGTCGAAATG
ATCCTGGTTGTAGTGTTATCTGCTACAACAAAACAGTAGTTCATATCGAG
TTCCGTACAGTAGTGCATGACTCCAGGTATGCTACTGACTGTTGTACCGT
TGGTACTTGTGGGTCATCTGTAGTACGGAGGAGTTCTGCAAACTAATATA
CTGTCTGTACTGTTCTCTATCAATGTTATTTAGTGCAGCGAACAGTCTGT
AACATCCGCGAGGTACTGTAGGCTACTGATCTACCATGCTGCTATCTACT
AGCGTACTCTTCTGGTACTGCTGTACAGTACTGTGTGCAGTGAGATTTTG
TGTACTGGTAGTGCTCGAAACCCATGCGAGACGTAACCTTTTTCCGCAGA
TGAAGAGGTTTGTGTTGCCCAGGTCATCCGAGCATGGTGACTCTTTTTTT
TAACCCCGGCAAAGCTAAGGCAAAAACCTTTATCCGATGCTGCCATACCG
AAGTATTTCTACATTTCCTGTAACATAACAAAGTGTATTTATTCCTCTGC
GGGGTAGGCGCCACCCCGGTTCGGCCGGACCAAGTAGGCAGTGTGAGGGT
TGCACTCACTAAAAGGCCTCTGACTTGACTTCCGGTCATGCTCAGTTCAC
GAGCTACCCTACCCGTTCGGGCGTAGGTCCATGAGCATACTGACCTTTAC
CGCTTTTGTGCGACAGGTACTGGGGGTGCTGCAGGTGTCGAGAAGAATCA
ATTGCTTCGACGATATCAAGCTGCCCTAGGGCGAGGACCTTGCTCAAGTC
ATGAAGCAATACGGTGGAATAGGGTTCACCGGCGCTGTGGGGTCCGCAGA
AGTGATCC
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Coding sequence (CDS) from alignment at H-paniculata_contig16943:513..1920-

>mRNA_H-paniculata_contig16943.3888.1 ID=mRNA_H-paniculata_contig16943.3888.1|Name=mRNA_H-paniculata_contig16943.3888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig16943:513..1920- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTGGTAGAGAGGTCGACAAGGAAAAGGCGACGCGGGGGGTCAAGAA
AAGGGCCGTCCACGACAATTCGGCGTGGGGGAAGATGCTGAACAACGTAC
AAGACATATTTGATCCCAAGGGAGTAATGCGGGTTCTGGCCCCCCACGAC
GACATGGTCCAGTTCAGGGAATGTTTTCGGGTACGGTACAAATATTTTTT
GGTGCTGAAGGACAACGTATGCGGGTGCAACGGACTCCCGCCGTGGTTCA
CAACAGGCTCCGCCGATAGCTCGAAACGGCCCAGTGTTCCCATGGAGCTG
AAGATGTTTGGTAGAGAGGTCGACAAGGAAAAGGCGACGCGGGGGGTCAA
GAAAAGGGCCGTCCACGACAATTCGGCGTGGGGGAAGATGCTGAACAACG
TACAAGACATATTTGATCCCAAGGGAGTAATGCGGGTTCTGGCCCCCCAC
GACGACATGGTCCAGTTCAGGGAATGTTTTCGGGTACGGTACAAATATTT
TTTGGTGCTGAAGGACAACGTATGCGGGTGCAACGGACTCCCGCCGTGGT
TCACAACAGGCTCCGCCGATAGCTCGAAACGGCCCAGTGTTCCCATGGAG
CTGAAGGTACTGGGGGTGCTGCAGGTGTCGAGAAGAATCAATTGCTTCGA
CGATATCAAGCTGCCCTAGGTACTGGGGGTGCTGCAGGTGTCGAGAAGAA
TCAATTGCTTCGACGATATCAAGCTGCCCTAG
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