mRNA_H-paniculata_contig16942.3887.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16942.3887.1
Unique NamemRNA_H-paniculata_contig16942.3887.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16942.3887.1 vs. uniprot
Match: D8LM04_ECTSI (CID domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM04_ECTSI)

HSP 1 Score: 352 bits (902), Expect = 2.540e-106
Identity = 241/408 (59.07%), Postives = 266/408 (65.20%), Query Frame = 1 
Query:  790 QDFGHAVQVANEALTGARSAMDASVRGDAAGAQVQAAEAAGKAALLACLLGGDAA--------GSSGGAGTHLAGLDPLDVRALARGNPAAVRRLYGEGFPFWCKQDGTRFRAQAQLDAHMDLLFRRKRARREQKG-SAQREWYCTGEEWMTDFGRLGPPTTGPRDGMGDGVGADGTDGAVVGEXXXXXXXXXXXXXXXANVPADERFTKCRICGDRFDMFYDNEEEEWMYRNACYITVTGAGGGPGDDGDDEEHXXXXXXXXXXXXXXXXXXGGKKIIVHRLCLDVSGLRDKAEIAWKDLMPGTPRRRKRP------VDAA-----GLDSQTAEDE--ASGEEGEWVAAS-SDVNCDEVDIDWLGNSASTAENGKANDGSAAAAESVPPLKRVKAEGGVEEMSGVEE 1944
            QDFG AVQVANE   GAR A+DAS+RGD +GAQVQAAEAAGKAA+LACLLGGDAA        G+  G G +LA LDPLDVR+LARGNPAAVRRLYGEGFPFWCKQDGTRF  QAQLDAHMDLLFRRK ARREQKG +A REWYCT EEWMTDFGRL PP        G               XXXXXXXXXXX    + VPADERF+KCRICGDRF MFYDN+EEEWMYRNACY+TV G G    +       XXXXXXXX          G ++IIVH+LCLDVSGLRDK EI W DLMPGTPR++KRP      +DAA     G D+   EDE   +GE G+      SD                    G+ +DG        PPLKR KAEG  EE +G  E
Sbjct:  260 QDFGRAVQVANEVAAGARVALDASLRGDLSGAQVQAAEAAGKAAMLACLLGGDAAAAVGGGLGGAGAGVGVYLADLDPLDVRSLARGNPAAVRRLYGEGFPFWCKQDGTRFAKQAQLDAHMDLLFRRKHARREQKGVAASREWYCTDEEWMTDFGRLAPPA-------GSXXXXXXXXXXXXXXXXXXXXXXXXXDGSKSCVPADERFSKCRICGDRFLMFYDNDEEEWMYRNACYVTVKGGG----EXXXXXXXXXXXXXXXAGGAPGEAAGGARQIIVHKLCLDVSGLRDKDEITWADLMPGTPRQKKRPAEGGDALDAAFFGEGGDDAAEQEDEKDGAGETGDSSGTHVSDSGGGHXXXXXXXXXXXXXXXGE-DDG--------PPLKRAKAEGATEEENGFGE 647
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BLAST of mRNA_H-paniculata_contig16942.3887.1 vs. uniprot
Match: A0A7S2DR18_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DR18_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.950e-17
Identity = 72/228 (31.58%), Postives = 104/228 (45.61%), Query Frame = 1 
Query: 1006 VRALARGNPAAVRRLYGEGFPFWCKQDGTRFRAQAQLDAHMDLLFRRKRARREQK--GSAQREWYCTGEEWMTDFGRLGPPTTGPRDGMGDGVGADGTDGAVVGEXXXXXXXXXXXXXXXANVPADERFTKCRICGDRFDMFYDNEEEEWMYRNACYITVTGAGGGPGDDGDDEEHXXXXXXXXXXXXXXXXXXGGKKIIVHRLCLDVSGLRDKAEIAWKDLMPGTPR 1683
              +L + N A + +L+    P +   DG +F+ Q QL AH ++L  R R RR++   GSA R W+CT E+W +DF +    +T P +G    V  +  D  V  +                 +  D+  TKCRICG+ F+MF+++E EEWMYRNA  + +  A   P D   D                         IIVHR C D        ++A   LMP TP+
Sbjct:  130 AESLNQKNAAVISQLFR--LPHYSSLDGMQFKHQQQLVAHEEMLQTRIRERRDEAAHGSASRPWFCTVEQWCSDFAQDASDSTNPMEG----VPVESEDADVPAKEVL--------------IVVDQAVTKCRICGEPFEMFWEDEVEEWMYRNAVRVKIQ-ATPDPLDPTSDVTSTAVD------------------IIVHRPCSDAVSTEGIVQVA--QLMPETPK 316
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BLAST of mRNA_H-paniculata_contig16942.3887.1 vs. uniprot
Match: A0A7S1Z7I6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z7I6_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.500e-13
Identity = 54/173 (31.21%), Postives = 74/173 (42.77%), Query Frame = 1 
Query: 1006 VRALARGNPAAVRRLYGEGFPFWCKQDGTRFRAQAQLDAHMDLLFRRKRARREQKGSAQREWYCTGEEWMTDFGRLGPPTTGPRDGMGDGVGADGTDGAVVGEXXXXXXXXXXXXXXXANVPADERFTKCRICGDRFDMFYDNEEEEWMYRNACYITVT-----GAGGGPGDD 1509
               L   N   +  LY  G PF    DG RF  Q +L  H+D LFRR++  +  + + +R WYCT   W       G  T          +GA G D     +               + V ADE   +C +CG  F+MF+D +E E+ YRN   I V      G+G GP D+
Sbjct:   44 TEGLKERNDTVIALLYDAGLPFVSSSDGRRFATQIELSNHLDELFRRRKLEQTMERTEERGWYCTDGTWA------GRETAT--------IGAAGEDATSASKANADEPTPET-----STVFADESRDRCVVCGINFEMFFDQDEGEYKYRNCKEINVVDHHKNGSGDGPSDE 197
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BLAST of mRNA_H-paniculata_contig16942.3887.1 vs. uniprot
Match: A0A8H7QZ07_9FUNG (CID domain-containing protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7QZ07_9FUNG)

HSP 1 Score: 81.6 bits (200), Expect = 2.710e-12
Identity = 58/170 (34.12%), Postives = 81/170 (47.65%), Query Frame = 1 
Query:  988 GLDPLDVRALARGNPAAVRRLYGEGFPFWCKQDGTRF----RAQAQLDAHMDLLFRRKRARREQ-KGSAQREWYCTGEEWMTDFGRLGPPTTGP---RDGMGDGVGADGTDGAVVGEXXXXXXXXXXXXXXXANVPADERFTKCRICGDRFDMFYDNEEEEWMYRNACYI 1473
            GL  LD + L    P A+  LY    P  CKQ G R+    + QA++DAH+D  FR+ R  +E+ K    R W+ T EEW+   G        P    DGMG  V +  T+ +                     +P D+    C ICG+RF  F++++EEEWMY+NA  I
Sbjct:  361 GLFLLDSKDLQIARPGAIELLYSAK-PLQCKQCGFRYPKTDKGQAKMDAHLDAHFRQNRKMKERVKRGLSRSWFVTVEEWINGEGGESTSQQAPAFLHDGMGH-VNSKSTEKSA-----QPSEETINPDHYTVIMPNDDSRKPCAICGERFIDFWNDDEEEWMYKNAIMI 523
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BLAST of mRNA_H-paniculata_contig16942.3887.1 vs. uniprot
Match: A0A7S2KEK9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KEK9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.730e-11
Identity = 47/151 (31.13%), Postives = 74/151 (49.01%), Query Frame = 1 
Query: 1027 NPAAVRRLYGEGFPFWCKQDGTRFRAQAQLDAHMDLLFRRKRARREQKGSAQREWYCTGEEWMTDFGRLGPPTTGPRDGMGDGVGADGTDGAVVGEXXXXXXXXXXXXXXXANVPADERFTKCRICGDRFDMFYDNEEEEWMYRNACYITV 1479
            N   +  LY +G P   K DG RF  + QL  H+D +F++ +  +  + + +R +Y T ++W+   G+     T  +  +    G  G D A V                   VPADE  + C ICG  FD++Y+++EEE+MYR+A  I V
Sbjct:   45 NAWVIGSLYDDGLPHVSKADGRRFATEIQLSKHLDYIFKKGQIEKSMERTEERGYYNTLDDWIG--GKKDVVMTEVK--ISADTGNKGDDSAKVNAVQSLP-----------EVPADENRSNCLICGKTFDIYYNDDEEEYMYRDAIEIEV 180
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BLAST of mRNA_H-paniculata_contig16942.3887.1 vs. uniprot
Match: A0A0B7N1P8_9FUNG (Uncharacterized protein n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7N1P8_9FUNG)

HSP 1 Score: 78.2 bits (191), Expect = 2.720e-11
Identity = 54/166 (32.53%), Postives = 78/166 (46.99%), Query Frame = 1 
Query: 1000 LDVRALARGNPAAVRRLYGEGFPFWCKQDGTRF----RAQAQLDAHMDLLFRRKRARREQ-KGSAQREWYCTGEEWMTDFGRLGPPTTGP---RDGMGDGVGADGTDGAVVGEXXXXXXXXXXXXXXXANVPADERFTKCRICGDRFDMFYDNEEEEWMYRNACYI 1473
            LD + L    P AV  LY    P  CKQ G R+    + QA++DAH+D  FR+ R  +E+ K    R W+ T +EW++  G        P    DGMG       +  +V                    +P D+    C ICG+RF  F++++EEEWMY+NA  +
Sbjct:  280 LDSKDLQIARPGAVELLYSAE-PLQCKQCGFRYPKTEKGQAKMDAHLDSHFRQNRKMKERAKRGLSRSWFVTVDEWISGEGGELMSQQAPAFLHDGMGP-----ASQKSVEKSSQPPGEEAVDPNLHTVVMPDDDNRKPCAICGERFVDFWNDDEEEWMYKNAILV 439
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BLAST of mRNA_H-paniculata_contig16942.3887.1 vs. uniprot
Match: K0RTS3_THAOC (CID domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RTS3_THAOC)

HSP 1 Score: 77.4 bits (189), Expect = 5.380e-11
Identity = 47/159 (29.56%), Postives = 71/159 (44.65%), Query Frame = 1 
Query: 1015 LARGNPAAVRRLYGEGFPFWCKQDGTRFRAQAQLDAHMDLLFRRKRARREQKGSAQREWYCTGEEWMTDFGRLGPPTTGPRDGMGDGVGADGTDGAVVGEXXXXXXXXXXXXXXXANVPADERFTKCRICGDRFDMFYDNEEEEWMYRNACYITVTGAG 1491
            + + N A + +LY  G PF C  DG RF  Q +L  H+D LF++ +  +  + + +R WY     W+T        +T   D +    GA   D  V                   +V ADE   +C +CG  FDMF+D+++ EW Y+N     V   G
Sbjct:  358 IKKRNDAVIAQLYEVGLPFVCSADGRRFGTQLELSKHLDALFKKSQIEKTMEKTEERAWYRKESLWITGSDE----STHAMDELN--AGASSIDNPV-----------DVVDASSYSVIADETRDRCPVCGVNFDMFFDDDDGEWRYKNCVEKAVENDG 499
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BLAST of mRNA_H-paniculata_contig16942.3887.1 vs. uniprot
Match: A0A8H7STS3_9FUNG (CID domain-containing protein n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7STS3_9FUNG)

HSP 1 Score: 77.0 bits (188), Expect = 8.040e-11
Identity = 55/166 (33.13%), Postives = 78/166 (46.99%), Query Frame = 1 
Query: 1000 LDVRALARGNPAAVRRLYGEGFPFWCKQDGTRF----RAQAQLDAHMDLLFRRKRARREQ-KGSAQREWYCTGEEWMTDFGRLGPPTTGP---RDGMGDGVGADGTDGAVVGEXXXXXXXXXXXXXXXANVPADERFTKCRICGDRFDMFYDNEEEEWMYRNACYI 1473
            LD + L    P A+  LY    P  CKQ G R+    + QA++DAH+D  FR+ R  +E+ K    R W+ T EEW+   G        P    DGMG  V    T+ +                     +P D+    C ICG+RF  F++++EEEWMY+NA  +
Sbjct:  378 LDSKDLQIARPGAIELLYSAE-PLQCKQCGFRYPKTEKGQAKMDAHLDSHFRQNRKMKERVKRGLSRSWFVTVEEWINGEGGELTSQQAPAFLHDGMGH-VNNKSTEKST----QPSGEEAINPDHYTVIMPNDDNRKPCAICGERFIDFWNDDEEEWMYKNAIKV 537
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BLAST of mRNA_H-paniculata_contig16942.3887.1 vs. uniprot
Match: A0A077X026_9FUNG (CID domain-containing protein n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077X026_9FUNG)

HSP 1 Score: 76.3 bits (186), Expect = 1.080e-10
Identity = 51/166 (30.72%), Postives = 77/166 (46.39%), Query Frame = 1 
Query: 1000 LDVRALARGNPAAVRRLYGEGFPFWCKQDGTRF----RAQAQLDAHMDLLFRRKRARREQ-KGSAQREWYCTGEEWMTDFGRLGPPTTGPRDGMGDGVGADGTDGAVVGEXXXXXXXXXXXXXXXANVPADERFTKCRICGDRFDMFYDNEEEEWMYRNACYITVT 1482
            L+ + L    P AV  LY  G P  CKQ G R+    + Q+++DAH+D  FR+ R  +E+ K    R W+ T +EW++  G        P   + D   +    G V                    +P +     C ICG+RF  F++++EEEWMY+NA  +  T
Sbjct:  273 LESKDLQIARPGAVEVLYS-GLPLQCKQCGFRYPKTEQGQSKMDAHLDSHFRQNRRMKERVKRGLSRSWFVTEDEWISGAGGELASHQAPTF-LNDSTSSAHPHGHVGSPSAQAGSETLGPDSQVVVMPDENNRKPCPICGERFVDFWNDDEEEWMYKNAVLVNNT 436
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BLAST of mRNA_H-paniculata_contig16942.3887.1 vs. uniprot
Match: A0A8H7V5Y4_9FUNG (CID domain-containing protein n=1 Tax=Mucor plumbeus TaxID=97098 RepID=A0A8H7V5Y4_9FUNG)

HSP 1 Score: 76.6 bits (187), Expect = 1.090e-10
Identity = 54/166 (32.53%), Postives = 76/166 (45.78%), Query Frame = 1 
Query: 1000 LDVRALARGNPAAVRRLYGEGFPFWCKQDGTRF----RAQAQLDAHMDLLFRRKRARREQ-KGSAQREWYCTGEEWMTDFGRLGPPTTGP---RDGMGDGVGADGTDGAVVGEXXXXXXXXXXXXXXXANVPADERFTKCRICGDRFDMFYDNEEEEWMYRNACYI 1473
            LD + L    P A+  LY    P  CKQ G R+    + QA++DAH+D  FR+ R  +E+ K    R W+ T +EW+   G        P    DGMG          +V                    +P D+    C ICG+RF  F++++EEEWMYRNA  +
Sbjct:  393 LDSKDLQIARPGAIELLYSAE-PLQCKQCGFRYPKTEKGQAKMDAHLDSHFRQNRKMKERVKRGLSRSWFVTVDEWINGEGGELMSQQAPAFLHDGMGH-----VNQKSVEKSNQPSGEDAIDPNLYTVIMPDDDSRKPCAICGERFIDFWNDDEEEWMYRNAILV 552
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16942.3887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM04_ECTSI2.540e-10659.07CID domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2DR18_9STRA1.950e-1731.58Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1Z7I6_9STRA1.500e-1331.21Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A8H7QZ07_9FUNG2.710e-1234.12CID domain-containing protein n=1 Tax=Mucor saturn... [more]
A0A7S2KEK9_9STRA1.730e-1131.13Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A0B7N1P8_9FUNG2.720e-1132.53Uncharacterized protein n=1 Tax=Parasitella parasi... [more]
K0RTS3_THAOC5.380e-1129.56CID domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A8H7STS3_9FUNG8.040e-1133.13CID domain-containing protein n=1 Tax=Thamnidium e... [more]
A0A077X026_9FUNG1.080e-1030.72CID domain-containing protein n=1 Tax=Lichtheimia ... [more]
A0A8H7V5Y4_9FUNG1.090e-1032.53CID domain-containing protein n=1 Tax=Mucor plumbe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16942contigH-paniculata_contig16942:1155..4814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score364.0
Seed ortholog evalue1.4e-97
Seed eggNOG ortholog2880.D8LM04
KEGG koko:K07478,ko:K14400
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0000993,GO:0001098,GO:0001099,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005849,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0019899,GO:0030846,GO:0031123,GO:0031124,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0046483,GO:0070013,GO:0070063,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0097659,GO:0098787,GO:0098789,GO:0099122,GO:1901360,GO:1901362,GO:1901363,GO:1901576
EggNOG free text desc.termination of RNA polymerase II transcription
EggNOG OGsKOG2071@1,KOG2071@2759
Ec32 ortholog descriptionRNA polymerase II-binding domain
Ec32 orthologEc-14_002360.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021
Exons3
Model size2561
Cds size1941
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16942.3887.1prot_H-paniculata_contig16942.3887.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16942 1242..4281 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929341.0149028-UTR-H-paniculata_contig16942:1154..12411622929341.0149028-UTR-H-paniculata_contig16942:1154..1241Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16942 1155..1241 +
1691480822.0458906-UTR-H-paniculata_contig16942:1154..12411691480822.0458906-UTR-H-paniculata_contig16942:1154..1241Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16942 1155..1241 +
1622929341.0737312-UTR-H-paniculata_contig16942:4281..48141622929341.0737312-UTR-H-paniculata_contig16942:4281..4814Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16942 4282..4814 +
1691480822.0885274-UTR-H-paniculata_contig16942:4281..48141691480822.0885274-UTR-H-paniculata_contig16942:4281..4814Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16942 4282..4814 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929341.0296013-CDS-H-paniculata_contig16942:1241..16791622929341.0296013-CDS-H-paniculata_contig16942:1241..1679Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16942 1242..1679 +
1691480822.060597-CDS-H-paniculata_contig16942:1241..16791691480822.060597-CDS-H-paniculata_contig16942:1241..1679Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16942 1242..1679 +
1622929341.0440576-CDS-H-paniculata_contig16942:2700..29631622929341.0440576-CDS-H-paniculata_contig16942:2700..2963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16942 2701..2963 +
1691480822.0697448-CDS-H-paniculata_contig16942:2700..29631691480822.0697448-CDS-H-paniculata_contig16942:2700..2963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16942 2701..2963 +
1622929341.05793-CDS-H-paniculata_contig16942:3041..42811622929341.05793-CDS-H-paniculata_contig16942:3041..4281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16942 3042..4281 +
1691480822.0779364-CDS-H-paniculata_contig16942:3041..42811691480822.0779364-CDS-H-paniculata_contig16942:3041..4281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16942 3042..4281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16942.3887.1

>prot_H-paniculata_contig16942.3887.1 ID=prot_H-paniculata_contig16942.3887.1|Name=mRNA_H-paniculata_contig16942.3887.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=647bp
MLTGQQQAAPSSSTTNTAVATTAPLPPHNHIPVPAPVPAPLSAPAAPPLP
APVAPPLPAPVTAPLPAPVAAPFPPPSLVPAPVPVTAVQLSRPPLPPLPP
PPLLMPVAPAPAPVAAPAPVAVPVPAVPPDVQALITARMKQLLDQQLREL
GESSTMTLEDLWRTNAELASGFRLVAQAQVHEELGLAPPAPPPTITVQPA
PQTHPLSQQPPPPIPLPAPQQHPPPQPHLAIQLPQDFGHAVQVANEALTG
ARSAMDASVRGDAAGAQVQAAEAAGKAALLACLLGGDAAGSSGGAGTHLA
GLDPLDVRALARGNPAAVRRLYGEGFPFWCKQDGTRFRAQAQLDAHMDLL
FRRKRARREQKGSAQREWYCTGEEWMTDFGRLGPPTTGPRDGMGDGVGAD
GTDGAVVGENGAMDGEDGYVDGADANVPADERFTKCRICGDRFDMFYDNE
EEEWMYRNACYITVTGAGGGPGDDGDDEEHGDGEQGGDGHGSGDEGGGGG
KKIIVHRLCLDVSGLRDKAEIAWKDLMPGTPRRRKRPVDAAGLDSQTAED
EASGEEGEWVAASSDVNCDEVDIDWLGNSASTAENGKANDGSAAAAESVP
PLKRVKAEGGVEEMSGVEEEESDNNTRSEGNGKDHADPMDDDSYGE*
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mRNA from alignment at H-paniculata_contig16942:1155..4814+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16942.3887.1 ID=mRNA_H-paniculata_contig16942.3887.1|Name=mRNA_H-paniculata_contig16942.3887.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3660bp|location=Sequence derived from alignment at H-paniculata_contig16942:1155..4814+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCACAGAAACACCTCGCTCGCTTGGTAGCAACATGGGAAGTCCAGTCTGT
ATTCACCCCTGAGAAGCGAAAGGAGCTACAGAGATACATGCTAACGGGCC
AGCAGCAGGCAGCTCCTTCTTCCTCAACAACAAACACCGCAGTCGCCACC
ACCGCACCACTGCCTCCACATAATCATATTCCAGTGCCAGCTCCGGTCCC
GGCTCCCTTATCCGCCCCGGCGGCGCCTCCCTTGCCTGCACCGGTGGCAC
CTCCCTTGCCCGCACCAGTGACAGCCCCCTTGCCCGCCCCGGTAGCGGCT
CCCTTCCCTCCACCGTCGCTCGTGCCGGCTCCCGTCCCCGTGACCGCAGT
CCAGTTGTCGCGGCCGCCGCTACCGCCGTTGCCGCCGCCTCCCCTGCTGA
TGCCTGTGGCGCCAGCACCGGCCCCCGTCGCGGCGCCAGCCCCCGTCGCA
GTGCCCGTCCCGGCGGTTCCGCCAGATGTGCAAGCATTGATCACCGCCCG
AATGAAGCAATTGCTGGACCAACAGGTGAGTTCTGGTGCGGGAGAGCGGG
TCAGGAGAGGTAGACAAAAACACTATTTATTCCGCGTTCGGTTCGTCGAA
TGCTTCCATATTCATGGTAGATATTTGTACTCTGGGTTTTACAATGAATG
AGATTCACTTTGTGGAATATCTAGGATTGTGGATTCTGTGTCGGCACCTA
TACTATCGCAATTTCTAGGCAAAACAGTGTATTGTGTATATCAATTCATG
GCACCAATGTACCGACCGTTTATTGTACTGGTTCTAGTGCAGGACAGCTA
ATAAGGAACGCAAACTGGGTGTTGACAGACCACGAGAGGTTTTCGCAACA
TTTTCGTGCATTTTTTTCTCAATACCGTACTCTTTGCTGGTCATCTTTAT
CCTCGATTTTGAAGGGAGATAATGCGAAATCGTTTATTTTTTTGCCTCCG
ACGGCGCTTGCACTGCCCCCCCCCTCACCGGGGGGGGGGCGAACTCATGT
TTTGCTACTTTGATTATTAGACAGTTTATCACGCGTTCTCGATAAGACGG
GGCTTCGTAAGTACCAGAGCGATCTCCGATGGCTAATCGCTCTTTCTTAG
GTTGCCAAATGCGACTCGAGAAAGGTTTAATCCAGCCCGTCTTCCTCAGC
CGTCGTATCCTCAGATCACTATCAATTTCCTAGAATTTCTATCGCATCAC
CAGCGGGAGGAGGGGCGTTTTTCTCGCGCTACAGCACTCGCCTGGTACTC
CACGTGGCTGGCTCGCTTCGCCCACGACAAAGTTTTTGCGGTACTTTGGT
AGATACCGGCTGCGCCTATGAACGAGATACAAGCTTTTTTCCCAACCGAT
ACACAACTCTGGAAAGTCAGGTTCCCCCGCGTAAATATCGTCCTGAGACC
GTTTGGACGCCGACTGTTCCAGGATTACAACAGATGACATGATGTGTGTT
TTCGTGTGCTCGTCTAGTTTGCTCACATGAACTGATACCGACTATCATTC
CTTTCCTACGTTGTCTTTTTTTTTTGGTCACCTGGGCCGATGACAGTTGC
GCGAACTCGGGGAATCCAGTACAATGACACTGGAAGATCTGTGGCGAACA
AACGCGGAGCTGGCCAGTGGTTTCCGACTCGTAGCGCAGGCACAGGTCCA
CGAAGAGCTAGGTTTGGCACCTCCCGCGCCGCCCCCCACCATCACCGTTC
AGCCTGCCCCGCAAACCCACCCGCTTTCGCAGCAACCCCCACCACCAATT
CCGCTGCCCGCGCCGCAGCAACACCCTCCACCGCAGCCCCATCTAGCAAT
CCAGCTTCCGTTACGACTCCCAGCGCAGGCCCCCAGTGCTGTCCCAGTGT
CGACATCCCTCCCGTGGTCGGCGAAGGTGCCACCAAGCCAGGACTTCGGA
CACGCGGTGCAGGTTGCAAACGAAGCATTAACGGGCGCGCGGAGCGCCAT
GGATGCAAGTGTGCGCGGCGATGCTGCTGGGGCACAGGTGCAAGCGGCGG
AGGCGGCTGGCAAGGCCGCATTGCTAGCGTGCTTGTTAGGGGGCGATGCG
GCTGGATCTAGCGGCGGCGCAGGGACACATCTCGCCGGGCTGGACCCACT
GGACGTGCGGGCACTCGCGAGGGGTAACCCAGCCGCGGTACGGCGGTTGT
ACGGGGAAGGGTTTCCGTTCTGGTGCAAGCAGGACGGCACGCGGTTCCGT
GCGCAGGCCCAGCTCGACGCGCATATGGACCTCCTTTTCCGCAGAAAACG
AGCGAGGAGGGAGCAAAAGGGGAGTGCACAGCGTGAATGGTATTGCACTG
GCGAGGAGTGGATGACTGACTTCGGTAGACTTGGTCCACCGACGACTGGA
CCGAGAGATGGCATGGGAGACGGAGTCGGAGCGGACGGCACTGACGGAGC
AGTTGTTGGTGAGAACGGCGCAATGGATGGCGAGGATGGGTACGTGGACG
GGGCGGATGCCAATGTGCCTGCCGACGAGCGGTTCACCAAGTGCCGCATT
TGTGGAGATCGTTTTGATATGTTCTACGATAACGAGGAGGAGGAGTGGAT
GTATCGAAACGCTTGTTATATAACGGTTACTGGGGCTGGCGGTGGGCCAG
GCGATGATGGCGATGATGAAGAACACGGAGATGGGGAACAGGGTGGGGAT
GGTCATGGTAGTGGGGATGAAGGGGGCGGTGGGGGGAAGAAAATCATCGT
CCATCGGCTCTGCCTAGATGTGAGCGGACTGAGGGACAAGGCGGAGATTG
CATGGAAAGATTTGATGCCTGGAACGCCTCGACGGAGGAAACGGCCAGTT
GACGCTGCTGGATTAGACTCGCAGACTGCCGAGGACGAAGCGAGTGGGGA
GGAAGGGGAATGGGTTGCGGCCTCTTCGGACGTAAATTGCGACGAGGTAG
ACATCGATTGGCTTGGCAATTCGGCAAGCACGGCGGAAAATGGCAAGGCA
AATGACGGTAGTGCCGCGGCGGCAGAATCTGTGCCACCGCTGAAACGAGT
GAAGGCAGAGGGCGGGGTGGAAGAGATGAGCGGGGTCGAGGAAGAGGAGA
GTGACAACAATACGAGATCAGAGGGTAACGGAAAGGACCATGCAGATCCC
ATGGACGACGACAGTTATGGGGAATGATTTTGTTGTTGTCCGCGAACACG
TTCAAGAGGGGGGTTAACTCTGTTTTTGTGCATATTGATGAGCATTGAGT
GCAGCACAAGATTAGGGAGACTGTTAGCACTGGGGTAGTCCTGACAATGA
TTTGCACCTGTGAGCACAATGTACGTTAGCCTCACTTTTTGTTGAATCTG
GTGAAACTGTGCGTGGTGATGCCTTTACGAAACTTTCTACGTCGTCCTGA
GTGCTGCCGCTGTCGATGACACGGGGTATTTTTGCGTTCGTTGATTTGGG
GTCTTTCCAACAAGCGGCTGTGGTAAGCACAAATGGCACGCCGTTTTACG
ATGACATTCTCCGCCTTGTTGTGCTTTGGAAGCTTGCGTAGGCTGCGGAA
TAAATATTGAGTACAAAAAATGCGCGCGCTTGTTTATTTTCTCCTTTATG
TGATACCACAGTCCCGGTTACCGTGGGCGTCGACTTTCACCATGCCGTGA
CTTCGGTTCCTGCTCTAAAAACTGGAAGATGTTGCAGTAGCACCAGGGAG
GACTGAGTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig16942:1155..4814+

>mRNA_H-paniculata_contig16942.3887.1 ID=mRNA_H-paniculata_contig16942.3887.1|Name=mRNA_H-paniculata_contig16942.3887.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3882bp|location=Sequence derived from alignment at H-paniculata_contig16942:1155..4814+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTAACGGGCCAGCAGCAGGCAGCTCCTTCTTCCTCAACAACAAACAC
CGCAGTCGCCACCACCGCACCACTGCCTCCACATAATCATATTCCAGTGC
CAGCTCCGGTCCCGGCTCCCTTATCCGCCCCGGCGGCGCCTCCCTTGCCT
GCACCGGTGGCACCTCCCTTGCCCGCACCAGTGACAGCCCCCTTGCCCGC
CCCGGTAGCGGCTCCCTTCCCTCCACCGTCGCTCGTGCCGGCTCCCGTCC
CCGTGACCGCAGTCCAGTTGTCGCGGCCGCCGCTACCGCCGTTGCCGCCG
CCTCCCCTGCTGATGCCTGTGGCGCCAGCACCGGCCCCCGTCGCGGCGCC
AGCCCCCGTCGCAGTGCCCGTCCCGGCGGTTCCGCCAGATGTGCAAGCAT
TGATCACCGCCCGAATGAAGCAATTGCTGGACCAACAGATGCTAACGGGC
CAGCAGCAGGCAGCTCCTTCTTCCTCAACAACAAACACCGCAGTCGCCAC
CACCGCACCACTGCCTCCACATAATCATATTCCAGTGCCAGCTCCGGTCC
CGGCTCCCTTATCCGCCCCGGCGGCGCCTCCCTTGCCTGCACCGGTGGCA
CCTCCCTTGCCCGCACCAGTGACAGCCCCCTTGCCCGCCCCGGTAGCGGC
TCCCTTCCCTCCACCGTCGCTCGTGCCGGCTCCCGTCCCCGTGACCGCAG
TCCAGTTGTCGCGGCCGCCGCTACCGCCGTTGCCGCCGCCTCCCCTGCTG
ATGCCTGTGGCGCCAGCACCGGCCCCCGTCGCGGCGCCAGCCCCCGTCGC
AGTGCCCGTCCCGGCGGTTCCGCCAGATGTGCAAGCATTGATCACCGCCC
GAATGAAGCAATTGCTGGACCAACAGTTGCGCGAACTCGGGGAATCCAGT
ACAATGACACTGGAAGATCTGTGGCGAACAAACGCGGAGCTGGCCAGTGG
TTTCCGACTCGTAGCGCAGGCACAGGTCCACGAAGAGCTAGGTTTGGCAC
CTCCCGCGCCGCCCCCCACCATCACCGTTCAGCCTGCCCCGCAAACCCAC
CCGCTTTCGCAGCAACCCCCACCACCAATTCCGCTGCCCGCGCCGCAGCA
ACACCCTCCACCGCAGCCCCATCTAGCAATCCAGCTTCCTTGCGCGAACT
CGGGGAATCCAGTACAATGACACTGGAAGATCTGTGGCGAACAAACGCGG
AGCTGGCCAGTGGTTTCCGACTCGTAGCGCAGGCACAGGTCCACGAAGAG
CTAGGTTTGGCACCTCCCGCGCCGCCCCCCACCATCACCGTTCAGCCTGC
CCCGCAAACCCACCCGCTTTCGCAGCAACCCCCACCACCAATTCCGCTGC
CCGCGCCGCAGCAACACCCTCCACCGCAGCCCCATCTAGCAATCCAGCTT
CCCCAGGACTTCGGACACGCGGTGCAGGTTGCAAACGAAGCATTAACGGG
CGCGCGGAGCGCCATGGATGCAAGTGTGCGCGGCGATGCTGCTGGGGCAC
AGGTGCAAGCGGCGGAGGCGGCTGGCAAGGCCGCATTGCTAGCGTGCTTG
TTAGGGGGCGATGCGGCTGGATCTAGCGGCGGCGCAGGGACACATCTCGC
CGGGCTGGACCCACTGGACGTGCGGGCACTCGCGAGGGGTAACCCAGCCG
CGGTACGGCGGTTGTACGGGGAAGGGTTTCCGTTCTGGTGCAAGCAGGAC
GGCACGCGGTTCCGTGCGCAGGCCCAGCTCGACGCGCATATGGACCTCCT
TTTCCGCAGAAAACGAGCGAGGAGGGAGCAAAAGGGGAGTGCACAGCGTG
AATGGTATTGCACTGGCGAGGAGTGGATGACTGACTTCGGTAGACTTGGT
CCACCGACGACTGGACCGAGAGATGGCATGGGAGACGGAGTCGGAGCGGA
CGGCACTGACGGAGCAGTTGTTGGTGAGAACGGCGCAATGGATGGCGAGG
ATGGGTACGTGGACGGGGCGGATGCCAATGTGCCTGCCGACGAGCGGTTC
ACCAAGTGCCGCATTTGTGGAGATCGTTTTGATATGTTCTACGATAACGA
GGAGGAGGAGTGGATGTATCGAAACGCTTGTTATATAACGGTTACTGGGG
CTGGCGGTGGGCCAGGCGATGATGGCGATGATGAAGAACACGGAGATGGG
GAACAGGGTGGGGATGGTCATGGTAGTGGGGATGAAGGGGGCGGTGGGGG
GAAGAAAATCATCGTCCATCGGCTCTGCCTAGATGTGAGCGGACTGAGGG
ACAAGGCGGAGATTGCATGGAAAGATTTGATGCCTGGAACGCCTCGACGG
AGGAAACGGCCAGTTGACGCTGCTGGATTAGACTCGCAGACTGCCGAGGA
CGAAGCGAGTGGGGAGGAAGGGGAATGGGTTGCGGCCTCTTCGGACGTAA
ATTGCGACGAGGTAGACATCGATTGGCTTGGCAATTCGGCAAGCACGGCG
GAAAATGGCAAGGCAAATGACGGTAGTGCCGCGGCGGCAGAATCTGTGCC
ACCGCTGAAACGAGTGAAGGCAGAGGGCGGGGTGGAAGAGATGAGCGGGG
TCGAGGAAGAGGAGAGTGACAACAATACGAGATCAGAGGGTAACGGAAAG
GACCATGCAGATCCCATGGACGACGACAGTTATGGGGAATGACCAGGACT
TCGGACACGCGGTGCAGGTTGCAAACGAAGCATTAACGGGCGCGCGGAGC
GCCATGGATGCAAGTGTGCGCGGCGATGCTGCTGGGGCACAGGTGCAAGC
GGCGGAGGCGGCTGGCAAGGCCGCATTGCTAGCGTGCTTGTTAGGGGGCG
ATGCGGCTGGATCTAGCGGCGGCGCAGGGACACATCTCGCCGGGCTGGAC
CCACTGGACGTGCGGGCACTCGCGAGGGGTAACCCAGCCGCGGTACGGCG
GTTGTACGGGGAAGGGTTTCCGTTCTGGTGCAAGCAGGACGGCACGCGGT
TCCGTGCGCAGGCCCAGCTCGACGCGCATATGGACCTCCTTTTCCGCAGA
AAACGAGCGAGGAGGGAGCAAAAGGGGAGTGCACAGCGTGAATGGTATTG
CACTGGCGAGGAGTGGATGACTGACTTCGGTAGACTTGGTCCACCGACGA
CTGGACCGAGAGATGGCATGGGAGACGGAGTCGGAGCGGACGGCACTGAC
GGAGCAGTTGTTGGTGAGAACGGCGCAATGGATGGCGAGGATGGGTACGT
GGACGGGGCGGATGCCAATGTGCCTGCCGACGAGCGGTTCACCAAGTGCC
GCATTTGTGGAGATCGTTTTGATATGTTCTACGATAACGAGGAGGAGGAG
TGGATGTATCGAAACGCTTGTTATATAACGGTTACTGGGGCTGGCGGTGG
GCCAGGCGATGATGGCGATGATGAAGAACACGGAGATGGGGAACAGGGTG
GGGATGGTCATGGTAGTGGGGATGAAGGGGGCGGTGGGGGGAAGAAAATC
ATCGTCCATCGGCTCTGCCTAGATGTGAGCGGACTGAGGGACAAGGCGGA
GATTGCATGGAAAGATTTGATGCCTGGAACGCCTCGACGGAGGAAACGGC
CAGTTGACGCTGCTGGATTAGACTCGCAGACTGCCGAGGACGAAGCGAGT
GGGGAGGAAGGGGAATGGGTTGCGGCCTCTTCGGACGTAAATTGCGACGA
GGTAGACATCGATTGGCTTGGCAATTCGGCAAGCACGGCGGAAAATGGCA
AGGCAAATGACGGTAGTGCCGCGGCGGCAGAATCTGTGCCACCGCTGAAA
CGAGTGAAGGCAGAGGGCGGGGTGGAAGAGATGAGCGGGGTCGAGGAAGA
GGAGAGTGACAACAATACGAGATCAGAGGGTAACGGAAAGGACCATGCAG
ATCCCATGGACGACGACAGTTATGGGGAATGA
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