mRNA_H-paniculata_contig1694.3886.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1694.3886.1
Unique NamemRNA_H-paniculata_contig1694.3886.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1694.3886.1 vs. uniprot
Match: D7G1K8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1K8_ECTSI)

HSP 1 Score: 281 bits (719), Expect = 2.570e-91
Identity = 153/319 (47.96%), Postives = 185/319 (57.99%), Query Frame = 1 
Query:    1 MRTEFAIALAMGL--ICGSQAGAPTYSCFDPPDEGQTNPLGEGFEDVVGADCCDALTDESDIIAGRLVYWDPVNCNHGPGLFAISEAALCRAHDTDGCRFCRETCEDFEGLCITCDEVAGSALTSAPTATPTPGMLDS----TPAPVMVT---EMPFGIFPDTPSPLPRQAVTEAPTTEPAMM-------------------------------------------------SPGDDEDNCMCLTGMSDVEREVMALRGKTMRCDTSCSDGSDLTWGVINCNYFALGQNCRACSESCAEDADGLWFDQFGIICKPCDAI 783
            MR++ A  +A GL  +C   A APTYSCFDPPDEGQTNPLGEG EDVV ++CC+AL DESD++A R V WDPVNCNHGPG   I+EA LCRAHDTDGCRFC ++C+ +EGLCITC+EV    L S  + TP+P    S    TPAP ++T   E PFGIFP TP+P+   A    PT                                                       +P  +  +C C+  +S+ E  V+  R K M CD +CSD SDL WGV+NCNYFALGQNCRACS+ C +  DG W DQ G  CKPC AI
Sbjct:    1 MRSDIATVIAFGLLSVCPVSA-APTYSCFDPPDEGQTNPLGEGMEDVVESECCEALIDESDMMADREVIWDPVNCNHGPGDEPIAEAYLCRAHDTDGCRFCHDSCDGYEGLCITCEEVLEDLLNSD-SPTPSPDFETSEFPATPAPAILTAATEAPFGIFPATPAPV---APVXXPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAPTAEASDCECVNSLSEEEMAVLTRRSKNMVCDPTCSDQSDLVWGVMNCNYFALGQNCRACSDLCDDQGDGTWLDQDGFPCKPCSAI 314
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1694.3886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1K8_ECTSI2.570e-9147.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1694contigH-paniculata_contig1694:19213..23313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_001410.1
Exons4
Model size789
Cds size789
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1694.3886.1prot_H-paniculata_contig1694.3886.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1694 19213..23313 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929340.9048533-CDS-H-paniculata_contig1694:19212..193851622929340.9048533-CDS-H-paniculata_contig1694:19212..19385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1694 19213..19385 +
1691480822.0054626-CDS-H-paniculata_contig1694:19212..193851691480822.0054626-CDS-H-paniculata_contig1694:19212..19385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1694 19213..19385 +
1622929340.919196-CDS-H-paniculata_contig1694:20955..211031622929340.919196-CDS-H-paniculata_contig1694:20955..21103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1694 20956..21103 +
1691480822.0172877-CDS-H-paniculata_contig1694:20955..211031691480822.0172877-CDS-H-paniculata_contig1694:20955..21103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1694 20956..21103 +
1622929340.935996-CDS-H-paniculata_contig1694:21890..222241622929340.935996-CDS-H-paniculata_contig1694:21890..22224Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1694 21891..22224 +
1691480822.0286443-CDS-H-paniculata_contig1694:21890..222241691480822.0286443-CDS-H-paniculata_contig1694:21890..22224Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1694 21891..22224 +
1622929340.9679499-CDS-H-paniculata_contig1694:23179..233131622929340.9679499-CDS-H-paniculata_contig1694:23179..23313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1694 23180..23313 +
1691480822.0366983-CDS-H-paniculata_contig1694:23179..233131691480822.0366983-CDS-H-paniculata_contig1694:23179..23313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1694 23180..23313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1694.3886.1

>prot_H-paniculata_contig1694.3886.1 ID=prot_H-paniculata_contig1694.3886.1|Name=mRNA_H-paniculata_contig1694.3886.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=263bp
MRTEFAIALAMGLICGSQAGAPTYSCFDPPDEGQTNPLGEGFEDVVGADC
CDALTDESDIIAGRLVYWDPVNCNHGPGLFAISEAALCRAHDTDGCRFCR
ETCEDFEGLCITCDEVAGSALTSAPTATPTPGMLDSTPAPVMVTEMPFGI
FPDTPSPLPRQAVTEAPTTEPAMMSPGDDEDNCMCLTGMSDVEREVMALR
GKTMRCDTSCSDGSDLTWGVINCNYFALGQNCRACSESCAEDADGLWFDQ
FGIICKPCDAIV*
back to top

mRNA from alignment at H-paniculata_contig1694:19213..23313+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1694.3886.1 ID=mRNA_H-paniculata_contig1694.3886.1|Name=mRNA_H-paniculata_contig1694.3886.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4101bp|location=Sequence derived from alignment at H-paniculata_contig1694:19213..23313+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCACTGAATTCGCTATCGCGTTGGCCATGGGCCTAATCTGCGGGTC
TCAAGCGGGTGCCCCCACGTACTCTTGCTTCGACCCCCCGGACGAGGGAC
AGACCAACCCTCTCGGCGAGGGATTCGAAGATGTGGTGGGAGCTGACTGT
TGCGACGCACTCACAGACGAGAGGTATGTGTGCGTGTGGGTGAGTTTGGT
CGATGTGGGCCTGCGTAGTCCCAACACGTGGGCTGGATCTGGTTGTTGAT
TTGATTGCGACGGGCTTTCGAGACAAATCGACATATTCGGGATGAACTGA
TCCACGCTCTTGGCTGATGATAACACAACGCTGTTTCTAGTTTCACAGCA
TCGTAATTTTGCTGTAATACAGTAGTAGGTAAGGGCCCAGTAGAAACCGT
GCTTGCAGCAAGTCACCATGATTCGTCTTGCATATTGCCACCGTCGGGTC
TCACCATACGAGGCATGAGTGTACGGCGTTCAGCCAAACTCAGGTTTTTC
TCAAATTCCAGTTGCATGGTGAGCCCTGGATATGTATATACGCCCCGGAG
TAACACGTTGCATATTGGTCCATGTTGAGGGTAAAAAGTTCGCACCGTGC
CGTCTAGACAGCAGCAGGCAAGCTCAATTTGGCATCAGGATCGTCTTTCC
CCTTGTATTAAAGGTGCGAGATGGTTCGTGCTGTTTACGTAAAAGACTCA
CGCCGTGTTTCGCATGATATAAACACAGCCCCTTGGTCGATCGTCCGATT
GTTGGATAGGGCGCTTGACTTAATGCGGTTCAACTTTGCTAATTTGTATA
ATGCATGTTTGTTGCGGTGTTGCCGCGAGGCGACTTTGTCAAGAAGTATA
CTGACATTGTAGTTTGATCTCTGGAAGCCGCTCATTGTACGACCCGTTCG
GGAGAGTCCGCGCTCGAAGGTGGTTGGTACAAAAGGGTGCGCATGCCACG
GTGCCGCACGGCATGACAGCGCCATCGGATCCTCATGTTGGATGCCACTG
GCTGTAGAATAGGCAAATCATATCATATCTTGTAATATGGGCGTCTAGAT
TCCCAGAAATTGAGCATGTAACTGATCTTTCGGGGCAGATCCCAGGCTGT
TGCGGGGACTACGACACCAGCACCAGCGACAGGAAAGCATATTCTCGCCA
TACTTCAGCATGTTGCCCCGCGTGGTTGAGCTGCCGCGTGATAATAAGCT
CACAGCGTGCTTTGTAAAGGCTGAAAAGCAAAAGCGGCAACAACAAGATC
ATGTGCTACAGCGCCGTCAAGGTTTCGGAGCATTACAGCCGTTGTCAGCT
GACAAATGCGCTGTGTGCGTATGCGCCGCGAAATCTCTTCGTGCAGCTCG
AATATCATCGGCCCTCACAATCCACGCACGGTTCCAGGTCTTTCTGCCTG
ATCTACATACAATTAAACTGAATACTGCACATCAATCACCCTCCTGAGGC
ACCCAGCAGTTCTCGGCTTCCTGCCCTGTGCACATTTAAAGTTCTACATA
CACACAGCAATCTTACTGGTTCGTGTATAAAATCACCCTTACGCACCAAA
ACCCGATCGATACTCCCACAACATCATTGCTGTACACCTTCACCATCATT
ACCACATGATAAATAGTTCACCCCCCCCCCCAACACGGCAACTCATTTAC
AACCTCGGTGTGTACGTATGTCGCGTTCGTGATCCCACTGCTGTATGACG
TCTTCTTCTGCTCTTGCTCGTGCGATGAATAAATCGTGTGCAGCGATATC
ATCGCGGGCCGCCTGGTGTACTGGGACCCCGTGAACTGCAACCATGGACC
CGGACTGTTCGCCATCTCCGAGGCTGCCCTTTGCCGTGCGCACGACACCG
ACGGATGCCGCTTCTGCCGCGAAACTTGCGAAGATTTCGAGGTACGAGAG
GAATGGATGTATTATTATGCCAGCTGACGGGGTTTTTGTGCACCACAAAT
TGCGAATTACTAGTGAATTATCAAGGCGCAGGTAAATCCAAGTTTTGAAT
GGCAGACAATATGAAGCACTGAAGCTCTAACCCTGTGCTTGGTCTTGTTA
ACTATTGTAATGAACGTGTACCTTACTTTGAGGGAGGTTTGCTGCCTTTT
CCTGTAATGGTGATAAGCTAGTACTCTGAGCGGCAATGCACCAACAATAT
GTAAAAAAAGAAGCGCTGTGCACAGGACAATTATAACTAAAATCATGAAA
CCAAAACAATATTAATAAGGAGCATTTCATTTCTCATCGGGCGATTTCTG
AATGTATTTACATGTAGTAGGTCTTAAGAAAAAAAAGTTGCCAACTTTGA
TCTGTTGTAAACTGTTGACCCCACCTCCCCCCCCTCCAACCCTCCCGACC
CTTGGTTCTTGTATTTATAAAAGAAGGTACTTGGGAGCTCATCAATTGTA
TCCTTGTTTTTACTGAGGCCTGAAGTTATCAAATACGTGTATTTTCCGTG
TCAGCCTAATGTCTACTGTCTATTGCACACGCGGATGATAACCTCCCTCG
CCCACGCCCTCTTGGCCGTCGGAAATTACTCTGATAGGAACTAAGCTCCG
TCCTCCCAAGGACGCGTGGTCATTATTCTGATGACTACGACATGCAAAAT
AAAAGTACGCCCTTACCCATTCCCCCCTCCCGTGCTCTCCTCCCCCGCAT
GGTCTTCGAACCTCACTCCACGTTCTAGGGTCTTTGCATCACCTGCGACG
AAGTCGCCGGATCGGCCCTCACATCCGCGCCCACTGCTACCCCAACCCCG
GGCATGCTGGACTCAACACCTGCGCCGGTAATGGTCACTGAAATGCCGTT
CGGCATCTTCCCTGATACTCCTTCCCCCCTACCCCGGCAAGCTGTCACCG
AGGCACCCACCACGGAGCCCGCTATGATGTCGCCTGGGGACGACGAAGAT
AACTGCATGTGCTTGACTGGGATGTCTGACGTGGAGCGAGAGGTGATGGC
TCTCAGGGGAAAGACCATGCGATGCGACACTTCTTGTTCCGACGGGAGCG
ATCTCACGTGGGGTAAGCAGTAGTTGTTCCGATGCTACTACTTAACGTGC
CCCGTCAATTTGGGTGGAATGCACATGTCTACCAACTACTGACAACCCGA
CCTTGCGCACCCTTTGCCAGCTGCTATATGTATGTGTCTGTGTGTCTGTG
TGTGTATTTTGATGCGTTGGAGAGACAATATATACATATGCACACTGTAA
TATACGGAGTAATATTGTGCTTACCCTGAATTCACGTCGTGTATGTAATG
ATCTACTGCTCTTCGTTTAAACAGTCGCTAACATACATAAGTCTTTATCA
TTATTATTAGTAGTATCAGTAGTATTAGTATTAGTAGTAGTATTATTAGT
ATTATTAGTATTATTAGTATTATATGTCACGTTAAAATATACTATTGATG
AGACATAGGCAATAATACTTATAATATAATAATAATAATAACAATAATAA
TAACAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACA
ATAACAATAATAATAATATTGTAAGTATTAGTATTATTAGTATTATTGCC
TATGTCTCATCAATAGTGTATTTTAACGTGACATATATCTTACTGGATTC
AAAAATAGGTACTTCGACTGATGTATCCAAATCATGACAACAATCCTTGG
CAAAACTGCACCAAAAACCCTCCAAAATGTTTTCACCTAGCTGCCCCTGC
GACTATAGCCGGCCAATAATCAATTATATTTGCACCCGAAATCCATAGAA
AAACATGAATTCAGTATACCAAGCTTTCAAACCACGGAGATATGACTACG
GGCCACTAGTGGATCAGAGTGGCGCGCTACAGTAGGGACTAAGACACGCG
GCCTCACCCGAAATATGTTTTTTTCGTCGCATACCCGTTCACCCCCCTCC
CGCCCCCTCGCACGCTTCCGTCTTCCACTACTTCGACTCTTCTCTTTCTT
GAACGATTAATCAATAGGTGTCATCAACTGCAACTACTTCGCTCTGGGGC
AGAACTGTAGGGCTTGCTCCGAGTCCTGTGCGGAGGACGCCGACGGTCTA
TGGTTCGACCAGTTCGGGATCATCTGCAAGCCTTGCGACGCCATCGTATG
A
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1694:19213..23313+

>mRNA_H-paniculata_contig1694.3886.1 ID=mRNA_H-paniculata_contig1694.3886.1|Name=mRNA_H-paniculata_contig1694.3886.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1578bp|location=Sequence derived from alignment at H-paniculata_contig1694:19213..23313+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCACTGAATTCGCTATCGCGTTGGCCATGGGCCTAATCTGCGGGTC
TCAAGCGGGTGCCCCCACGTACTCTTGCTTCGACCCCCCGGACGAGGGAC
AGACCAACCCTCTCGGCGAGGGATTCGAAGATGTGGTGGGAGCTGACTGT
TGCGACGCACTCACAGACGAGAGATGCGCACTGAATTCGCTATCGCGTTG
GCCATGGGCCTAATCTGCGGGTCTCAAGCGGGTGCCCCCACGTACTCTTG
CTTCGACCCCCCGGACGAGGGACAGACCAACCCTCTCGGCGAGGGATTCG
AAGATGTGGTGGGAGCTGACTGTTGCGACGCACTCACAGACGAGAGCGAT
ATCATCGCGGGCCGCCTGGTGTACTGGGACCCCGTGAACTGCAACCATGG
ACCCGGACTGTTCGCCATCTCCGAGGCTGCCCTTTGCCGTGCGCACGACA
CCGACGGATGCCGCTTCTGCCGCGAAACTTGCGAAGATTTCGAGCGATAT
CATCGCGGGCCGCCTGGTGTACTGGGACCCCGTGAACTGCAACCATGGAC
CCGGACTGTTCGCCATCTCCGAGGCTGCCCTTTGCCGTGCGCACGACACC
GACGGATGCCGCTTCTGCCGCGAAACTTGCGAAGATTTCGAGGGTCTTTG
CATCACCTGCGACGAAGTCGCCGGATCGGCCCTCACATCCGCGCCCACTG
CTACCCCAACCCCGGGCATGCTGGACTCAACACCTGCGCCGGTAATGGTC
ACTGAAATGCCGTTCGGCATCTTCCCTGATACTCCTTCCCCCCTACCCCG
GCAAGCTGTCACCGAGGCACCCACCACGGAGCCCGCTATGATGTCGCCTG
GGGACGACGAAGATAACTGCATGTGCTTGACTGGGATGTCTGACGTGGAG
CGAGAGGTGATGGCTCTCAGGGGAAAGACCATGCGATGCGACACTTCTTG
TTCCGACGGGAGCGATCTCACGTGGGGGTCTTTGCATCACCTGCGACGAA
GTCGCCGGATCGGCCCTCACATCCGCGCCCACTGCTACCCCAACCCCGGG
CATGCTGGACTCAACACCTGCGCCGGTAATGGTCACTGAAATGCCGTTCG
GCATCTTCCCTGATACTCCTTCCCCCCTACCCCGGCAAGCTGTCACCGAG
GCACCCACCACGGAGCCCGCTATGATGTCGCCTGGGGACGACGAAGATAA
CTGCATGTGCTTGACTGGGATGTCTGACGTGGAGCGAGAGGTGATGGCTC
TCAGGGGAAAGACCATGCGATGCGACACTTCTTGTTCCGACGGGAGCGAT
CTCACGTGGGGTGTCATCAACTGCAACTACTTCGCTCTGGGGCAGAACTG
TAGGGCTTGCTCCGAGTCCTGTGCGGAGGACGCCGACGGTCTATGGTTCG
ACCAGTTCGGGATCATCTGCAAGCCTTGCGACGCCATCGTATGAGTGTCA
TCAACTGCAACTACTTCGCTCTGGGGCAGAACTGTAGGGCTTGCTCCGAG
TCCTGTGCGGAGGACGCCGACGGTCTATGGTTCGACCAGTTCGGGATCAT
CTGCAAGCCTTGCGACGCCATCGTATGA
back to top