prot_H-paniculata_contig10594.388.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig10594.388.1
Unique Nameprot_H-paniculata_contig10594.388.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length154
Homology
[Close]
BLAST of mRNA_H-paniculata_contig10594.388.1 vs. uniprot
Match: D7FTF9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF9_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 4.090e-9
Identity = 38/88 (43.18%), Postives = 55/88 (62.50%), Query Frame = 0 
Query:   70 SLPPSLRCDTFPRLVCCQ---LLAMRIPRTSGKVAKCKGFALVRYVEPGAALSAVKKISTIKMGSHQLRACSSTNANKLFIGKLNKTW 154
            +LPPS   +T  ++   Q   +++MR+  T  +  KC G ALVR+     A  A++++  IKM S++L A SS+NAN LFIG LNKTW
Sbjct:  256 NLPPSATEETVKKVAEEQGGEVVSMRVMMTKDEEPKCAGLALVRFQNRDHAARALERLPEIKMESNKLEARSSSNANTLFIGNLNKTW 343
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10594.388.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTF9_ECTSI4.090e-943.18Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 57..154
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 34..56
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..33
NoneNo IPR availableTMHMMTMhelixcoord: 36..58
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 101..142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10594contigH-paniculata_contig10594:4203..7135 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10594.388.1mRNA_H-paniculata_contig10594.388.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig10594 3740..7135 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig10594.388.1 ID=prot_H-paniculata_contig10594.388.1|Name=mRNA_H-paniculata_contig10594.388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp
MKNRFSIVFKLWREGRSLVATVSGTAPPTVERDVRALCVVFVLACFLFRC
ACVLVFSPRSFVSVVSLPPSLPPSLRCDTFPRLVCCQLLAMRIPRTSGKV
AKCKGFALVRYVEPGAALSAVKKISTIKMGSHQLRACSSTNANKLFIGKL
NKTW
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf