mRNA_H-paniculata_contig1693.3881.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1693.3881.1
Unique NamemRNA_H-paniculata_contig1693.3881.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1693.3881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1693contigH-paniculata_contig1693:4439..5362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size924
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1693.3881.1prot_H-paniculata_contig1693.3881.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1693 4516..4995 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929340.0911365-UTR-H-paniculata_contig1693:4438..45151622929340.0911365-UTR-H-paniculata_contig1693:4438..4515Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1693 4439..4515 +
1691480821.7324965-UTR-H-paniculata_contig1693:4438..45151691480821.7324965-UTR-H-paniculata_contig1693:4438..4515Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1693 4439..4515 +
1622929340.1265097-UTR-H-paniculata_contig1693:4995..53621622929340.1265097-UTR-H-paniculata_contig1693:4995..5362Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1693 4996..5362 +
1691480821.7577271-UTR-H-paniculata_contig1693:4995..53621691480821.7577271-UTR-H-paniculata_contig1693:4995..5362Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1693 4996..5362 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929340.1114073-CDS-H-paniculata_contig1693:4515..49951622929340.1114073-CDS-H-paniculata_contig1693:4515..4995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1693 4516..4995 +
1691480821.7464468-CDS-H-paniculata_contig1693:4515..49951691480821.7464468-CDS-H-paniculata_contig1693:4515..4995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1693 4516..4995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1693.3881.1

>prot_H-paniculata_contig1693.3881.1 ID=prot_H-paniculata_contig1693.3881.1|Name=mRNA_H-paniculata_contig1693.3881.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=160bp
MTFSPGSNRGAEHPSACLWRCLKRALLLAKFSPQKAQHVLVAMAVVANAG
LTPVGVGGGVPCGDTAHVSGPPSELVFSSVPMVADCVLVLEMGDVTNQCM
CLSFGHTRFRSTWLTSFGIRPQRFDFLCTAHGWRYAFRSDQLGGATSRLP
SYSAPVGSG*
back to top

mRNA from alignment at H-paniculata_contig1693:4439..5362+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1693.3881.1 ID=mRNA_H-paniculata_contig1693.3881.1|Name=mRNA_H-paniculata_contig1693.3881.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=924bp|location=Sequence derived from alignment at H-paniculata_contig1693:4439..5362+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCCCGGCCCCTCTTGGCCTCCGCCGCAGTCCCACCCACAGTGGCGATT
GAGCAGCACCGGTAACCGAACAGCAACATGACTTTCTCGCCGGGGTCTAA
TCGAGGCGCAGAACATCCGTCAGCTTGCCTCTGGAGGTGCCTGAAGAGAG
CACTCCTGCTAGCAAAATTTTCCCCGCAAAAGGCGCAGCACGTTTTAGTG
GCGATGGCGGTGGTGGCGAATGCGGGGTTAACGCCTGTGGGCGTGGGGGG
TGGGGTTCCTTGTGGCGACACTGCCCACGTGTCGGGTCCACCCTCCGAGT
TGGTATTTTCGTCGGTTCCCATGGTTGCGGATTGCGTTCTTGTGTTAGAA
ATGGGTGACGTGACCAACCAATGTATGTGTTTGAGCTTCGGGCACACCCG
TTTCCGTAGTACTTGGCTGACGAGCTTTGGGATTCGGCCACAGAGGTTTG
ATTTTCTATGTACGGCTCACGGTTGGCGATATGCTTTCCGGAGTGACCAA
CTCGGGGGTGCAACGTCAAGGCTGCCCTCGTACTCTGCGCCGGTCGGGTC
TGGATGAACTGCGGGTCGCCAATACTCTTTGTTGGACGGAAAAGATCCCC
CTCTGTCGCTAAATGCCGATTTACGCCAGGTCAAGCGCCTTTGACCAGCA
ACACAGCATAAACCTTGGGCTTTCCTCCGCGTGCACAAACTGGCTTCTTC
TGTGCTGCTCCAAGCTCCCCGTGCAGTCGTGGAAGGATTATACTACTGTG
ACTGCCGTTTGCGGTGAGCTGGTACTGTACTGTATAACAATCTGATGTAA
GTACCACTACCATTGTTCTCTCCGTGTTTTTCTTTAGCGGTTGAGGAAAT
TAAGTCATCCTCGCTATACCGTGCAGGTAGTGCCTACTCTATAAAACGTG
TTGGTATGGAGAGAAGGTCGATCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1693:4439..5362+

>mRNA_H-paniculata_contig1693.3881.1 ID=mRNA_H-paniculata_contig1693.3881.1|Name=mRNA_H-paniculata_contig1693.3881.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=960bp|location=Sequence derived from alignment at H-paniculata_contig1693:4439..5362+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTTTCTCGCCGGGGTCTAATCGAGGCGCAGAACATCCGTCAGCTTG
CCTCTGGAGGTGCCTGAAGAGAGCACTCCTGCTAGCAAAATTTTCCCCGC
AAAAGGCGCAGCACGTTTTAGTGGCGATGGCGGTGGTGGCGAATGCGGGG
TTAACGCCTGTGGGCGTGGGGGGTGGGGTTCCTTGTGGCGACACTGCCCA
CGTGTCGGGTCCACCCTCCGAGTTGGTATTTTCGTCGGTTCCCATGGTTG
CGGATTGCGTTCTTGTGTTAGAAATGGGTGACGTGACCAACCAATGTATG
TGTTTGAGCTTCGGGCACACCCGTTTCCGTAGTACTTGGCTGACGAGCTT
TGGGATTCGGCCACAGAGGTTTGATTTTCTATGTACGGCTCACGGTTGGC
GATATGCTTTCCGGAGTGACCAACTCGGGGGTGCAACGTCAAGGCTGCCC
TCGTACTCTGCGCCGGTCGGGTCTGGATGAATGACTTTCTCGCCGGGGTC
TAATCGAGGCGCAGAACATCCGTCAGCTTGCCTCTGGAGGTGCCTGAAGA
GAGCACTCCTGCTAGCAAAATTTTCCCCGCAAAAGGCGCAGCACGTTTTA
GTGGCGATGGCGGTGGTGGCGAATGCGGGGTTAACGCCTGTGGGCGTGGG
GGGTGGGGTTCCTTGTGGCGACACTGCCCACGTGTCGGGTCCACCCTCCG
AGTTGGTATTTTCGTCGGTTCCCATGGTTGCGGATTGCGTTCTTGTGTTA
GAAATGGGTGACGTGACCAACCAATGTATGTGTTTGAGCTTCGGGCACAC
CCGTTTCCGTAGTACTTGGCTGACGAGCTTTGGGATTCGGCCACAGAGGT
TTGATTTTCTATGTACGGCTCACGGTTGGCGATATGCTTTCCGGAGTGAC
CAACTCGGGGGTGCAACGTCAAGGCTGCCCTCGTACTCTGCGCCGGTCGG
GTCTGGATGA
back to top