mRNA_H-paniculata_contig16926.3878.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16926.3878.1
Unique NamemRNA_H-paniculata_contig16926.3878.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16926.3878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16926contigH-paniculata_contig16926:221..729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size275
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929339.8595603-CDS-H-paniculata_contig16926:222..4461622929339.8595603-CDS-H-paniculata_contig16926:222..446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16926 223..446 -
1691480821.6515586-CDS-H-paniculata_contig16926:222..4461691480821.6515586-CDS-H-paniculata_contig16926:222..446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16926 223..446 -
1622929339.8934174-CDS-H-paniculata_contig16926:680..7291622929339.8934174-CDS-H-paniculata_contig16926:680..729Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16926 681..729 -
1691480821.6628244-CDS-H-paniculata_contig16926:680..7291691480821.6628244-CDS-H-paniculata_contig16926:680..729Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16926 681..729 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16926.3878.1prot_H-paniculata_contig16926.3878.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16926 223..729 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16926.3878.1

>prot_H-paniculata_contig16926.3878.1 ID=prot_H-paniculata_contig16926.3878.1|Name=mRNA_H-paniculata_contig16926.3878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
STSASTAGSAAARLPEAKKSHHSLHRLSAPQERAFKEYLREVPNATHTHR
VDGVDGPERSREAVPPACVDEAPGESGANPLVHRQGFERLV
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mRNA from alignment at H-paniculata_contig16926:221..729-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16926.3878.1 ID=mRNA_H-paniculata_contig16926.3878.1|Name=mRNA_H-paniculata_contig16926.3878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=509bp|location=Sequence derived from alignment at H-paniculata_contig16926:221..729- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCAACCTCCGCGTCAACGGCAGGTTCGGCAGCTGCCAGGTTACCCGAAGG
CGAGTTCCTTCAGGTTCTACTGCTGTGGTCCTGCTGTTTTTACTGCTTGT
TTTTATTTGTACTGTTGTCGGTATTGTTTGTACTGTTTGTACTGTTTGTA
CTGCTTGTACTGCTTGTGCTACTGTTTTACTGCTGTTTGTACTGCTGTCT
GTACTGCTACTACGACACGAATGCTGTTTGTGTATGTCTTGACTGCTGTA
CGCCCCGTCCTCTCTGTTGCCTCCTGTATCCAGCAAAGAAGTCTCACCAC
AGCTTGCATCGACTGAGCGCCCCACAGGAGAGGGCGTTCAAGGAATACCT
CAGGGAAGTTCCTAATGCGACACACACACACAGAGTGGATGGCGTCGATG
GTCCTGAACGATCGAGAGAAGCGGTGCCTCCCGCGTGTGTGGACGAGGCG
CCGGGAGAAAGCGGCGCTAACCCACTTGTACATAGACAAGGGTTTGAGCG
CCTTGTCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig16926:221..729-

>mRNA_H-paniculata_contig16926.3878.1 ID=mRNA_H-paniculata_contig16926.3878.1|Name=mRNA_H-paniculata_contig16926.3878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig16926:221..729- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCAACCTCCGCGTCAACGGCAGGTTCGGCAGCTGCCAGGTTACCCGAAGT
CAACCTCCGCGTCAACGGCAGGTTCGGCAGCTGCCAGGTTACCCGAAGCA
AAGAAGTCTCACCACAGCTTGCATCGACTGAGCGCCCCACAGGAGAGGGC
GTTCAAGGAATACCTCAGGGAAGTTCCTAATGCGACACACACACACAGAG
TGGATGGCGTCGATGGTCCTGAACGATCGAGAGAAGCGGTGCCTCCCGCG
TGTGTGGACGAGGCGCCGGGAGAAAGCGGCGCTAACCCACTTGTACATAG
ACAAGGGTTTGAGCGCCTTGTCCAAAGAAGTCTCACCACAGCTTGCATCG
ACTGAGCGCCCCACAGGAGAGGGCGTTCAAGGAATACCTCAGGGAAGTTC
CTAATGCGACACACACACACAGAGTGGATGGCGTCGATGGTCCTGAACGA
TCGAGAGAAGCGGTGCCTCCCGCGTGTGTGGACGAGGCGCCGGGAGAAAG
CGGCGCTAACCCACTTGTACATAGACAAGGGTTTGAGCGCCTTGTC
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