mRNA_H-paniculata_contig1692.3876.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1692.3876.1 vs. uniprot
Match: D7FIG4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIG4_ECTSI) HSP 1 Score: 622 bits (1604), Expect = 7.390e-189 Identity = 508/1501 (33.84%), Postives = 696/1501 (46.37%), Query Frame = 2
Query: 2 VKLGQMIKQMERPGPTMHKSTLVGLIKSLVKEGKAKVASAPLPE-----GRTLKAFFGGEMLVHKNAPTDPASMKIYGQKFQQLEIEVTKRITKIRNQGFRGEKHKWNVAGSSGRFMVHERKMHRTMILHRELLRCMPSTTTVERIGSRPLDLDSVILDIPLGVFMTMFGYPPNYLFSDEMRRVLRKAEKLKQTVRQSPRAIWEMMGTVDWYKEPLASSLQVLYDMRVLTKLDSPLSSGSTGGGQGG---------------------------ARAPNHLPYAHEDVRRASREGNAHAVLGQSAAAGLGPHQPPNSKPPTVKELEAALETSKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLNVKDPPKDIRMGLGWACVHVDLAVYMEEKRFTEHKRVTGHIQWTDFWGCYQFHGTGKKDTLVGGDNQQTRNTTGA-EDGSHVAHPLASWLLEK--IPELANSEAWDGDELIPPTEPQHPGNTWHRVTRKWTPAEDQLLLDAVVSFKPDAAANKDGKKSARAIRYDMNPKLRVALRPVADQLSKTPEACWKRYKRLAEVLSKTPAPDFIAHPLEGKFPAG-RKRNASSAGVLDNNDRGEENGNXXXXXXXXXXXXXXXHAQRDSGRKKKHRKLTGLLGEKAPLHIGDR----------EEDRKLAREQAAMAKAAGFEWVNEAGSWEEDGRKGGFKPRAFSAWQWTMDELAAFTAVRQVLLVSDERFDPLATLARLKGVSPPLLQKAYRVLLSLRQVNILEKAWTANEFRVEDCVDHEVYKMIGRHGLEMVSRGIAAVDALHSYGFPDAWAKPKLVLHDERRRLMEMLDRTSQE------SPTASPDHSRGIPIAPGSRADTLRLELKDIGVDRDLMGTVLEAIATGGAGFSVKAHFSLINDGNEKEEDGGGLSTGFLNVGGAGAXXXXXXXXXXXXX--------------------------ATGIGRARGLAAA-----------------------VSQEITLDRDQPGTQDKGPSEERLVFGRAGAHAGILESMAGQDGSGRPVPEVNTTKYRTPRIIDSFIMGSVAADIKPLS----SSLAWSVGGNAARSHDPPHPDDTGSGIGGSGTRECDKDSEHDDPRLVIGPEIKWDLGSSADA------DGTLVCRVLGALKEAGGAGLSVPELRISVRGARVGSDEMEEDDGESKAVMEKEDSVLMAGLGSALERGVAVCVCGAEDIRYMLTEMAGSWIVPAGDGSKCAAPNHASGPSSSTEPXXXXXNSSPFSRCKLDSMDVERSEDDKEDGAGSGMAPGWKGKKRQAAVPGGGPI----SSTGTRVVSGKKRRSKPSVWMPWTNLDGKVDLALLSRIREGVVSHVKDHCGCRASDIRTKECPFLTVGETLLILRDLVRRKVLVEDVVPDTREATLAEGWGISRNTHDTWSKQSKQPSEGSADQQVAGLSGSRASKSKGFCNEEIGTAARASFSVAIGWSDVMMCMRG 4159
+K+ Q+IK +E PGP + K+TL ++ LV+EG+ K A+AP PE GR +K F GEM++ +A TDP S+ Y + F +E V + T+I+ G ++ W+ S RF++++RKMHRTMILHRELLRC+ + R+GSR LDLD VILD L F+TMFG PPNYL S EM +VL+KAE K T+RQ+PRAIWE+M TV WYKE L S+LQ L+DMR+LTK+DSP + + P P+A+ + G++ A G + + A+E ++ A ALL K PPK+ RMGLGWA +HVD+ +Y E+K + +RV GH+QW++FW YQF GTG++ + + G E+ + VAHPLASWLL+K +P L N + W D+ P E + N WH + WT +D L+ AV +F P K + R + +R A++PVAD + K+ EACW+RY+ +A +K + AH PA R RN + LDN D G XXXXXXXXXXXXXXX +R TGLL + PL + D E RK ARE+AA+AKAAGFEWVNE SWEEDGR GG PR F W WT +EL A AVRQ+LLV RF+P L R++ PP LQKAYR L++ RQ++I + AW AN++ V+D VDHEVYKM+GRHG MVSRGI A LH+ G D W+ P L + R ++D SP D++ P P +R +L + KD+G +R ++ +LE++ +G A F+V S L G ++V G G XXXXXXXXXXXXX AT +G+ AAA + E + P G + A G + A SG T+YR+ R ID+ IM +V A++KP S+ W P H + GSG R V PE+ W ++++ DG V+ ALK+AG G+++ +L + R A+ + DSMD E + + S GWKG SS G + G KR+ V PWT DG+VDL L+R+R+G+V++V+ + GC A+DIR E FLT+GET+L+LRDLVRRKVL + VPDT LA GWG+S+ SG+ A+ S+ + + AA SFS A+GW +M ++G
Sbjct: 508 LKVIQLIKLLEGPGPMLQKATLDTVVAELVQEGRIKTATAPQPERWAWRGR-MKTFGHGEMVLLPDAKTDPESLAEYAENFYAVETAVHRESTRIKAGERYGAQYSWDGVKSPERFLIYKRKMHRTMILHRELLRCL-TRLPGHRVGSRALDLDRVILDTQLSTFITMFGCPPNYLHSKEMYKVLKKAESKKATIRQAPRAIWEIMRTVPWYKEALMSTLQTLHDMRILTKMDSPAAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPSSLPGEDPFAYRHATAQVVPISTDETTGKAVAVSGG-----GDGSAAIDKFHKAVEAARVARQDALQYSRTPVARDTTRGISRDKKARSAAAEALLREKSPPKEFRMGLGWAVLHVDVVIYTEDKSMAQPRRVPGHMQWSNFWNTYQFFGTGQRAKELAKHDSVMNVALGVTEEVAQVAHPLASWLLKKARVPHLTNPKEWGVDDDEP--EEEEEVNRWHWAKKLWTAEQDMALILAVKNFLPKPTY--PNSKPSGPGRDGYSSSMRQAVQPVADMVGKSAEACWRRYRNIANEQAK-----YAAHGEALPLPANMRTRNKKRS--LDNEDDGGXXXXXXXXXXXXXXXXXXXXGRR-----------TGLLAIQGPLMMADLGHLQFRASELNESRKKAREEAALAKAAGFEWVNEENSWEEDGRAGGVLPRPFDKWAWTTEELEALVAVRQLLLVPAARFNPAQALERMRVFRPPTLQKAYRSLMASRQIDIAQAAWAANDYSVQDSVDHEVYKMVGRHGKGMVSRGIVAAGRLHALGIADEWSSP-LPTFESRTPSNNIIDNPMWLPLKLLCSPPRPDDYT--TPQPPAARPASLAV--KDVGGNRTMVSNLLESVVSGRASFAVGIPASRPT----------ALEVG-VSVDGMGXXXXXXXXXXXXXXXXXXXXXXXXXXXXATDAAAGTAVPPATRVGKTASDAAAPAXXXXXXXXXXXXXXXXXXXPRLGAETAVTGGHPAKPGVGNEAAQGTVVAGPAAGGNKKDSAA---SGLQESVTTATRYRSARCIDADIMATVDAEVKPRDDGCVSAEPW-----------PAHAVEGGSG------------------RDVYAPEMGWGSTATSEGATPTEDDGVATSAVVEALKKAGKEGMTLSQLWGAARRAKAAT-------------------------------------------------------------------------------------------VDADSMDEEEASE-------SATTKGWKGXXXXXXXXXXXXXXXAPSSPGLALKDGVKRK----VLFPWTTFDGEVDLRFLNRVRQGLVAYVRSNPGCLAADIREAEVSFLTIGETMLLLRDLVRRKVLRDHFVPDTTAVALAGGWGLSQQQQ----------------------SGAWAAGSERASEQHVRMAATTSFSTALGWQGMMARIKG 1807
BLAST of mRNA_H-paniculata_contig1692.3876.1 vs. uniprot
Match: A0A6H5JZA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZA5_9PHAE) HSP 1 Score: 555 bits (1429), Expect = 6.660e-164 Identity = 486/1501 (32.38%), Postives = 677/1501 (45.10%), Query Frame = 2
Query: 2 VKLGQMIKQMERPGPTMHKSTLVGLIKSLVKEGKAKVASAPLPE-----GRTLKAFFGGEMLVHKNAPTDPASMKIYGQKFQQLEIEVTKRITKIRNQGFRGEKHKWNVAGSSGRFMVHERKMHRTMILHRELLRCMPSTTTVERIGSRPLDLDSVILDIPLGVFMTMFGYPPNYLFSDEMRRVLRKAEKLKQTVRQSPRAIWEMMGTVDWYKEPLASSLQVLYDMRVLTKLDSPLSSGSTGG--------------------------GQGGARAPNHLPYAHEDVRRASREGNAHAVLGQSAAAGLGPHQPPNSKPPTVKELEAALETSKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLNVKDPPKDIRMGLGWACVHVDLAVYMEEKRFTEHKRVTGHIQWTDFWGCYQFHGTGKKDTLVGGDNQQTRNTTGAEDGSHVAHPLASWLLEKIPELANSEAWDGDELIPPTEPQHPGNTWHRVTRKWTPAEDQLLLDAVVSFKPDAAANKDGKKSARAIRYDMNPKLRVALRPVADQLSKTPEACWKRYKRLAEVLSKTPAPDFIAHPLEGKFPAGRKRNASSAGVLDNNDRGEENGNXXXXXXXXXXXXXXXHAQRDSGRKKKHRK--LTGLLGEKAPLHIGDREEDRKLAREQAAMAKAAGFEWVNEAGSWEEDGRKGGFKPRAFSAWQWTMDELAAFTAVRQVLLVSDERFDPLATLARLKGVSPPLLQKAYRVLLSLRQVNILEKAWTANEFRVEDCVDHEVYKMIGRHGLEMVSRGIAAVDALHSYGFPD-----AWAKP----------KLVLHDERRRLMEMLDRTSQESPTASPDHSRGI-PIAPGSR---------------ADTLRLELKDIGVDRDLMGTVLEAIATGGAGFSVKAHFSLINDGNEKEE-DGGGLSTGFLNVGGAGAXXXXXXXXXXXXXATGIGRARGLAAAVSQEITLDRDQPGTQDKGPSEERLVFGRA--------------------------------------GAHAGILESMAGQDGSGRPVPEVNTTKYRTPRIIDSFIMGSVAADIKPLSSSLAWSVGGNAARSHDPPHPDDTGSGIGGSGTRECDKDSEHDDPRLVIGPEIKW------DLGSSADADGTLVCRVLGALKEAGGAGLSVPELRISVRGAR-VGSDEMEEDDGESKAVMEKEDSVLMAGLGSALERGVAVCVCGAEDIRYMLTEMAGSWIVPAGDGSKCAAPNHASGPSSSTEPXXXXXNSSPFSRCKLDSMDVERSEDDKEDGAGSGMAPGWKGKKRQAAVPGGGPI----SSTGTRVVSGKKRRSKPSVWMPWTNLDGKVDLALLSRIREGVVSHVKDHCGCRASDIRTKECPFLTVGETLLILRDLVRRKVLVEDVVPDTREATLAEGWGISRNTHDT-WSKQSKQPSEGSADQQVAGLSGSRASKSKGFCNEEIGTAARASFSVAIGWSDVMMCMRG 4159
+K+ Q+IK +E PGP + K+TL ++ LV+EG+ K A AP P+ GR +K F GEM++ +A TDP S+ Y + F +E + G ++ W+ S RF++H+RKM RTMILHRELLRC+ + +R+GSR LDLD VILD+ L F+TMFG PPNYL S EM +VL+KAE K T+RQ+PRAIWE+M TV WYKE L S+LQ+L+DMR+LTK+DSP + G + P P+A+ + G++ A G + + A+E ++ A ALL PPK+ RMGLGWA +HVD+ +Y E+K + +RV GH+QW++FW YQ +P L N + W D+ EP+ ED L+ AV ++ P K + R + +R A++PVAD + K+ EACW+RY+ +A +K + AH PA R + DN D G XXXXX + SG+K+ RK TGLL + PL + K ARE+AA+AKAAGFEWVNE SWEEDG GG PR F W WT +EL A AVRQ+LLVS RF+P KAYR L++ RQ++I + AW AN++ V+D VDHEVYKM+GRHG MVSRGI A LH+ G W+ P ++ + +++L R S ASP I P P +R A L +KDIG +R ++ +LE++ +G A F+V S DG G+ G +VGG XXXXXXXXXXXXX T + A S T G AG + +G G V T+YR+ R ID+ IM +V A+++P GG +A P H + GSG R V PE+ W + + A+ DG V+ ALK+AG G+++ +L + R A+ V GES+ +++ L +G L +CVCGA D+RY+ + G +P G ++ + +S P T P M+VE D+E+ + S GWKG SS G + G KR+ V PWT DG+VDL L+R+R+G+V++V+ + GC A+ IR E FLT+GET+L+LRDLVRRKVL + VPDT LA GWG+S+ + W+ S++ SE + + AA SFS A+GW +M + G
Sbjct: 566 LKVIQLIKLLEGPGPMLQKATLDTVVAELVQEGRIKTAIAPQPKRWAWRGR-MKTFGHGEMILLPDAKTDPESLAEYAENFYAVEAAGERY----------GAQYSWDGVKSPERFLIHKRKMQRTMILHRELLRCL-TRLPGQRVGSRALDLDRVILDMQLSTFITMFGCPPNYLHSKEMYKVLKKAEAKKATIRQAPRAIWEIMRTVPWYKEALMSTLQILHDMRILTKMDSPAAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAPPSSLPGEDPFAYRHATAQVVPISTDETTGKAVAVSGG-----GDGSAAIDKFHKAVEAARVARQDALQYSRTPGARDTTRGISRDKKARSAAAEALLRENSPPKEFRMGLGWAVLHVDVVIYTEDKNMAQPRRVPGHMQWSNFWNTYQ-----------------------------------------VPYLTNPKEWGVDD----DEPEXXX-------------EDMALILAVKNYLPKPTY--PNTKPSGPGRDGYSSSMRQAVQPVADMVGKSAEACWRRYRNIANEQAK-----YAAHGEALPLPA-NMRTRNKKRPHDNEDDGXX-------------XXXXXXXKSGSGKKENKRKGRRTGLLAIQGPLMMA------KKAREEAALAKAAGFEWVNEENSWEEDGCAGGVLPRPFDKWAWTTEELEALVAVRQLLLVSAARFNP----------------KAYRSLMASRQIDIAQAAWAANDYSVQDSVDHEVYKMVGRHGKGMVSRGIVAAGRLHALGIAGDNTEHEWSSPLPTFESRTPSNNIIDNPMWLPLKLLCRFVSLSLPASPYLDAKIQPRLPPARSPPRPDDYTAPQPPAARPASLAVKDIGGNRTMVSNLLESVVSGRASFAVGIPASRPTTLELGVSIDGMGMGDGVRDVGGXXXXXXXXXXXXXXXXXTDAAAGAAVPPATSLGKTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPAAGGNKKDSGASGLQESV--ATATRYRSARCIDADIMATVDAEVRPRDD------GGVSAEPW-PAHAMEGGSG------------------RDVFPPEMGWGSTATSEGAAPAEDDGVATSAVVEALKKAGKEGMTLSQLWGAARRAKTVTVRSTAATTGESER--QQQWRRLRGVIGCVLRSSGVLCVCGAGDVRYVHEDSCGLLAIPPGPTAESGSFGTSSAPV--TAPATP--------------MEVEADSMDEEEASDSATRKGWKGXXXXXXXXXXXXXXXAPSSPGLALKDGVKRK----VLFPWTTFDGEVDLRFLNRVRQGLVAYVRSNPGCLAAGIREAELSFLTIGETMLLLRDLVRRKVLRDHFVPDTTAVALAGGWGLSQQQQSSAWAAGSERASE-----------------------QHVRMAATTSFSTALGWQGMMARIEG 1876 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1692.3876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1692.3876.1 >prot_H-paniculata_contig1692.3876.1 ID=prot_H-paniculata_contig1692.3876.1|Name=mRNA_H-paniculata_contig1692.3876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1404bp MIKQMERPGPTMHKSTLVGLIKSLVKEGKAKVASAPLPEGRTLKAFFGGEback to top mRNA from alignment at H-paniculata_contig1692:4537..22308- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1692.3876.1 ID=mRNA_H-paniculata_contig1692.3876.1|Name=mRNA_H-paniculata_contig1692.3876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=17772bp|location=Sequence derived from alignment at H-paniculata_contig1692:4537..22308- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1692:4537..22308- >mRNA_H-paniculata_contig1692.3876.1 ID=mRNA_H-paniculata_contig1692.3876.1|Name=mRNA_H-paniculata_contig1692.3876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=8424bp|location=Sequence derived from alignment at H-paniculata_contig1692:4537..22308- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |