mRNA_H-paniculata_contig16913.3874.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16913.3874.1
Unique NamemRNA_H-paniculata_contig16913.3874.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig16913.3874.1 vs. uniprot
Match: D8LKW8_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW8_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 6.390e-43
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 1 
Query:    1 QWVKTSTNKQRCPVFCLAWAPEGVTRCITGNSSGEFTLWKDGAFNFVTILQAHESAVRSMAWSNSGNTLISGDH 222
            QWVKTSTNKQRCPVFCLAWAP GVTRCITGNSSGEFTLWKDG+FNFVTILQAH SAVRSMAWS+SGNTLISGDH
Sbjct:   71 QWVKTSTNKQRCPVFCLAWAPAGVTRCITGNSSGEFTLWKDGSFNFVTILQAHSSAVRSMAWSHSGNTLISGDH 144
[Close]
BLAST of mRNA_H-paniculata_contig16913.3874.1 vs. uniprot
Match: A0A6J8CE71_MYTCO (PFS2 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8CE71_MYTCO)

HSP 1 Score: 123 bits (309), Expect = 4.050e-32
Identity = 52/82 (63.41%), Postives = 67/82 (81.71%), Query Frame = 1 
Query:    1 QWVKTSTNKQRCPVFCLAWAPEGVTRCITGNSSGEFTLWKDGAFNFVTILQAHESAVRSMAWSNSGNTLISGDHNGIIKYWQ 246
            ++++TSTNK RCP+FCLAW PEG  R +TG SSGEFTLW    FNF TILQAH+++VR+M WSN+ + +I+GDH+G IKYWQ
Sbjct:  135 KFIRTSTNKFRCPIFCLAWTPEG-RRLVTGASSGEFTLWNGLTFNFETILQAHDTSVRAMVWSNNDSWMITGDHSGFIKYWQ 215
[Close]
BLAST of mRNA_H-paniculata_contig16913.3874.1 vs. uniprot
Match: A0A0T6BFK7_9SCAR (WD40 domain-containing protein n=1 Tax=Oryctes borbonicus TaxID=1629725 RepID=A0A0T6BFK7_9SCAR)

HSP 1 Score: 120 bits (301), Expect = 9.780e-32
Identity = 50/82 (60.98%), Postives = 65/82 (79.27%), Query Frame = 1 
Query:    1 QWVKTSTNKQRCPVFCLAWAPEGVTRCITGNSSGEFTLWKDGAFNFVTILQAHESAVRSMAWSNSGNTLISGDHNGIIKYWQ 246
            ++VKT+TNK RCP+FC+AW PEG  R +TG SSGEFTLW    FNF TILQAH+S VR+M WS++ + +++GDH G +KYWQ
Sbjct:  128 RFVKTATNKMRCPIFCMAWTPEG-RRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRTMVWSHNDSWMVTGDHAGYVKYWQ 208
[Close]
BLAST of mRNA_H-paniculata_contig16913.3874.1 vs. uniprot
Match: A0A2S2R372_9HEMI (Pre-mRNA 3' end processing protein WDR33 n=12 Tax=Aphididae TaxID=27482 RepID=A0A2S2R372_9HEMI)

HSP 1 Score: 125 bits (314), Expect = 1.380e-31
Identity = 57/81 (70.37%), Postives = 63/81 (77.78%), Query Frame = 1 
Query:    4 WVKTSTNKQRCPVFCLAWAPEGVTRCITGNSSGEFTLWKDGAFNFVTILQAHESAVRSMAWSNSGNTLISGDHNGIIKYWQ 246
            +VKT TNK RCPVFCLAW PEG  R ITG SSGEFTLW    FNF TILQAH+S VRSM WS++GN + +GDH G IKYWQ
Sbjct:  134 FVKTVTNKVRCPVFCLAWTPEG-RRLITGASSGEFTLWNGLTFNFETILQAHDSPVRSMVWSHNGNWMTTGDHTGFIKYWQ 213
[Close]
BLAST of mRNA_H-paniculata_contig16913.3874.1 vs. uniprot
Match: A0A8K0KG33_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0KG33_LADFU)

HSP 1 Score: 120 bits (302), Expect = 1.800e-31
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 1 
Query:    1 QWVKTSTNKQRCPVFCLAWAPEGVTRCITGNSSGEFTLWKDGAFNFVTILQAHESAVRSMAWSNSGNTLISGDHNGIIKYWQ 246
            ++VKT+TNK RCP+FCLAW PEG  R +TG SSGEFTLW    FNF TILQAH+S VR+M WS++   +++GDH+G +KYWQ
Sbjct:  128 RFVKTATNKMRCPIFCLAWTPEG-RRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRTMVWSHNDVWMVTGDHSGYVKYWQ 208
[Close]
BLAST of mRNA_H-paniculata_contig16913.3874.1 vs. uniprot
Match: A0A2R5LNS0_9ACAR (Putative polyadenylation factor i complex subunit pfs2 (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5LNS0_9ACAR)

HSP 1 Score: 118 bits (296), Expect = 2.240e-31
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:    1 QWVKTSTNKQRCPVFCLAWAPEGVTRCITGNSSGEFTLWKDGAFNFVTILQAHESAVRSMAWSNSGNTLISGDHNGIIKYWQ 246
            ++V+TSTNK RCP+FC+ W PEG  R ITG SSGEFTLW    FNF TILQAH+S+VR M WS++   +++GDH G +KYWQ
Sbjct:   76 KFVRTSTNKMRCPIFCVVWTPEG-RRLITGASSGEFTLWNGLTFNFETILQAHDSSVRCMVWSHNDTWMVTGDHAGYVKYWQ 156
[Close]
BLAST of mRNA_H-paniculata_contig16913.3874.1 vs. uniprot
Match: A0A2P8Z677_BLAGE (Pre-mRNA 3' end processing protein WDR33 n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8Z677_BLAGE)

HSP 1 Score: 119 bits (297), Expect = 2.390e-31
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 1 
Query:    1 QWVKTSTNKQRCPVFCLAWAPEGVTRCITGNSSGEFTLWKDGAFNFVTILQAHESAVRSMAWSNSGNTLISGDHNGIIKYWQ 246
            ++VKT+TNK RCP+FC+AW PEG  R +TG SSGEFTLW    FNF TILQAH+S VR+M WS++   +++GDH G +KYWQ
Sbjct:  128 RFVKTATNKMRCPIFCMAWTPEG-RRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRTMVWSHNDVWMVTGDHAGYVKYWQ 208
[Close]
BLAST of mRNA_H-paniculata_contig16913.3874.1 vs. uniprot
Match: A0A293LLG7_ORNER (Uncharacterized protein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293LLG7_ORNER)

HSP 1 Score: 118 bits (296), Expect = 2.410e-31
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:    1 QWVKTSTNKQRCPVFCLAWAPEGVTRCITGNSSGEFTLWKDGAFNFVTILQAHESAVRSMAWSNSGNTLISGDHNGIIKYWQ 246
            ++V+TSTNK RCP+FC+ W PEG  R ITG SSGEFTLW    FNF TILQAH+S+VR M WS++   +++GDH G +KYWQ
Sbjct:  120 KFVRTSTNKMRCPIFCVVWTPEG-RRLITGASSGEFTLWNGLTFNFETILQAHDSSVRCMVWSHNDTWMVTGDHAGYVKYWQ 200
[Close]
BLAST of mRNA_H-paniculata_contig16913.3874.1 vs. uniprot
Match: A0A0C9QT63_9HYME (Wdr33 protein n=1 Tax=Fopius arisanus TaxID=64838 RepID=A0A0C9QT63_9HYME)

HSP 1 Score: 120 bits (300), Expect = 2.430e-31
Identity = 50/82 (60.98%), Postives = 65/82 (79.27%), Query Frame = 1 
Query:    1 QWVKTSTNKQRCPVFCLAWAPEGVTRCITGNSSGEFTLWKDGAFNFVTILQAHESAVRSMAWSNSGNTLISGDHNGIIKYWQ 246
            ++VKT+TNK RCP+FC+AW PEG  R +TG SSGEFTLW    FNF TILQAH+S VR+M WS++ + +++GDH G +KYWQ
Sbjct:  148 RFVKTATNKMRCPIFCMAWTPEG-RRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRTMVWSHNESWMVTGDHAGYVKYWQ 228
[Close]
BLAST of mRNA_H-paniculata_contig16913.3874.1 vs. uniprot
Match: A0A158NE97_ATTCE (Uncharacterized protein n=3 Tax=Aculeata TaxID=7434 RepID=A0A158NE97_ATTCE)

HSP 1 Score: 120 bits (300), Expect = 2.860e-31
Identity = 50/82 (60.98%), Postives = 65/82 (79.27%), Query Frame = 1 
Query:    1 QWVKTSTNKQRCPVFCLAWAPEGVTRCITGNSSGEFTLWKDGAFNFVTILQAHESAVRSMAWSNSGNTLISGDHNGIIKYWQ 246
            ++VKT+TNK RCP+FC+AW PEG  R +TG SSGEFTLW    FNF TILQAH+S VR+M WS++ + +++GDH G +KYWQ
Sbjct:  149 RFVKTATNKMRCPIFCMAWTPEG-RRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRTMVWSHNESWMVTGDHAGYVKYWQ 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16913.3874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKW8_ECTSI6.390e-4394.59CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6J8CE71_MYTCO4.050e-3263.41PFS2 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0... [more]
A0A0T6BFK7_9SCAR9.780e-3260.98WD40 domain-containing protein n=1 Tax=Oryctes bor... [more]
A0A2S2R372_9HEMI1.380e-3170.37Pre-mRNA 3' end processing protein WDR33 n=12 Tax=... [more]
A0A8K0KG33_LADFU1.800e-3162.20Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A2R5LNS0_9ACAR2.240e-3160.98Putative polyadenylation factor i complex subunit ... [more]
A0A2P8Z677_BLAGE2.390e-3160.98Pre-mRNA 3' end processing protein WDR33 n=1 Tax=B... [more]
A0A293LLG7_ORNER2.410e-3160.98Uncharacterized protein (Fragment) n=1 Tax=Ornitho... [more]
A0A0C9QT63_9HYME2.430e-3160.98Wdr33 protein n=1 Tax=Fopius arisanus TaxID=64838 ... [more]
A0A158NE97_ATTCE2.860e-3160.98Uncharacterized protein n=3 Tax=Aculeata TaxID=743... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16913contigH-paniculata_contig16913:3932..4868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.6
Seed ortholog evalue1.1e-35
Seed eggNOG ortholog2880.D8LKW8
Preferred nameWDR33
KEGG koko:K15542
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000785,GO:0000790,GO:0001650,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005847,GO:0005849,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0007276,GO:0007283,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0018130,GO:0019438,GO:0019953,GO:0022414,GO:0031123,GO:0031124,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032774,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044454,GO:0044464,GO:0044703,GO:0045184,GO:0046483,GO:0046907,GO:0048232,GO:0048609,GO:0050657,GO:0050658,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090305,GO:0090501,GO:0097659,GO:0098787,GO:0098789,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.mRNA cleavage
EggNOG OGsCOG2319@1,KOG0284@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Exons2
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929339.1596909-CDS-H-paniculata_contig16913:3931..40391622929339.1596909-CDS-H-paniculata_contig16913:3931..4039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16913 3932..4039 -
1691480821.2961576-CDS-H-paniculata_contig16913:3931..40391691480821.2961576-CDS-H-paniculata_contig16913:3931..4039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16913 3932..4039 -
1622929339.1763976-CDS-H-paniculata_contig16913:4715..48681622929339.1763976-CDS-H-paniculata_contig16913:4715..4868Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16913 4716..4868 -
1691480821.3077414-CDS-H-paniculata_contig16913:4715..48681691480821.3077414-CDS-H-paniculata_contig16913:4715..4868Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16913 4716..4868 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16913.3874.1prot_H-paniculata_contig16913.3874.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16913 3932..4868 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16913.3874.1

>prot_H-paniculata_contig16913.3874.1 ID=prot_H-paniculata_contig16913.3874.1|Name=mRNA_H-paniculata_contig16913.3874.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
QWVKTSTNKQRCPVFCLAWAPEGVTRCITGNSSGEFTLWKDGAFNFVTIL
QAHESAVRSMAWSNSGNTLISGDHNGIIKYWQVTNH*
back to top

mRNA from alignment at H-paniculata_contig16913:3932..4868-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16913.3874.1 ID=mRNA_H-paniculata_contig16913.3874.1|Name=mRNA_H-paniculata_contig16913.3874.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=937bp|location=Sequence derived from alignment at H-paniculata_contig16913:3932..4868- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTGGGTGAAAACCTCGACCAATAAGCAACGGTGTCCTGTCTTCTGTCT
GGCGTGGGCCCCCGAAGGAGTAACGCGCTGCATTACAGGAAACTCTAGCG
GAGAGTTTACTCTGTGGAAAGACGGAGCGTTCAATTTCGTCACTATCCTT
CAGGTGGGGGATGCTTTTCAATGTTTCGCTACAACATAGCACGGGGGGGG
GGGGGGCAGGTCATTCACCTAGCGCAAATTTCATTTTACGCACAATAACC
CACTCGTCACAGTTCAAGTATCATTAAAGGTTATACTTCTCCTTTCTCAT
AAGTATACTCGGTTATGGTTATAGACGCACTTAAACATCTCCGTTTTTTT
ATTCGTGGAATTCCAAATGTTTTTGGGGGGTTTAATTAAACCCATTTTTT
TTAGTCAAACAACTGGCTTTTAACACCAAGACACGCCGTGAAAAACACTA
CTCGGCCATTTTTTTTTTTTTTTTGTTGGAAATGTGGTGTTGTCCCGCAA
GTACAGTATGTCGTGATGACAGACATGCGTAAAATATCTCCGATTTTTTT
ATTTCAAGAAAAAATTGAACCTTACATTAATTTGGGGTTGAGCCCCGAAA
TATTGAGTCAAATAGTTGACTTTTAATACCGGAGCACATTCCGTGCATAT
AAGCACTCGGCCGAAAAACGCCAAAAAAAAATGCACGTCGTCTTTTTTTG
GCTCTATGGTAAAAAGTTAAAATTCTCAGCGCGTGTTTGGTGTTAAAATT
CAACTGTTTTATCCAAAAAAATTGGGTATCAACCCCTTCCCCTTCTCTCC
CTCTCAATTTCTATCGTCTCTCCGGTAAGGCTCACGAGAGCGCCGTCCGT
TCGATGGCTTGGAGTAACTCCGGTAACACGCTCATCTCCGGAGATCACAA
TGGGATAATCAAGTACTGGCAGGTAACAAACCACTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig16913:3932..4868-

>mRNA_H-paniculata_contig16913.3874.1 ID=mRNA_H-paniculata_contig16913.3874.1|Name=mRNA_H-paniculata_contig16913.3874.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig16913:3932..4868- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTGGGTGAAAACCTCGACCAATAAGCAACGGTGTCCTGTCTTCTGTCT
GGCGTGGGCCCCCGAAGGAGTAACGCGCTGCATTACAGGAAACTCTAGCG
GAGAGTTTACTCTGTGGAAAGACGGAGCGTTCAATTTCGTCACTATCCTT
CAGCAGTGGGTGAAAACCTCGACCAATAAGCAACGGTGTCCTGTCTTCTG
TCTGGCGTGGGCCCCCGAAGGAGTAACGCGCTGCATTACAGGAAACTCTA
GCGGAGAGTTTACTCTGTGGAAAGACGGAGCGTTCAATTTCGTCACTATC
CTTCAGGCTCACGAGAGCGCCGTCCGTTCGATGGCTTGGAGTAACTCCGG
TAACACGCTCATCTCCGGAGATCACAATGGGATAATCAAGTACTGGCAGG
TAACAAACCACTAAGCTCACGAGAGCGCCGTCCGTTCGATGGCTTGGAGT
AACTCCGGTAACACGCTCATCTCCGGAGATCACAATGGGATAATCAAGTA
CTGGCAGGTAACAAACCACTAA
back to top