mRNA_H-paniculata_contig16913.3873.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16913.3873.1
Unique NamemRNA_H-paniculata_contig16913.3873.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16913.3873.1 vs. uniprot
Match: F0XW64_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XW64_AURAN)

HSP 1 Score: 146 bits (369), Expect = 1.800e-40
Identity = 61/104 (58.65%), Postives = 78/104 (75.00%), Query Frame = 1 
Query:    1 QPSMTPIRHFLA-HGANPIRGLSFGPTDSKFASCSDDSTVRIWDWEYYKEERALTGHGWDVKTVEWHPFKSLIVSGSKDNLIKLWDPRTGNSLSTLYGHKNTVV 309
            + +MTP++  L  H    +RGL F P+D+KF SC+DD TVRIWDWE ++EER L GHGWDVKT  WHP   LI SGSKDN +K+WDPR  + ++TLYGHK+TV+
Sbjct:   98 ESTMTPMKEILGTHQGQAVRGLDFAPSDAKFCSCADDGTVRIWDWELFQEERILAGHGWDVKTCAWHPSYQLIASGSKDNQVKMWDPRKRSCVATLYGHKHTVM 201
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BLAST of mRNA_H-paniculata_contig16913.3873.1 vs. uniprot
Match: A0A6H5JUK6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK6_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 2.080e-38
Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:   10 MTPIRHFLAHGANPIRGLSFGPTDSKFASCSDDSTVRIWDWEYYKEERALTGHGWDVKTVEWHPFK 207
            MT ++HF+AHGANPIRGLSFGPTDSKFASCSDDSTVRIWDWEYYKEERALTGHGWDVKTVEWHP+K
Sbjct:    1 MTAVQHFIAHGANPIRGLSFGPTDSKFASCSDDSTVRIWDWEYYKEERALTGHGWDVKTVEWHPYK 66
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BLAST of mRNA_H-paniculata_contig16913.3873.1 vs. uniprot
Match: A0A3S1BDQ9_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1BDQ9_ELYCH)

HSP 1 Score: 141 bits (356), Expect = 5.990e-37
Identity = 67/105 (63.81%), Postives = 81/105 (77.14%), Query Frame = 1 
Query:    1 QPSMTPIRHFLAHGANPIRGLSFGPTDSKFASCSDDSTVRIWDWEYYKEERALTGHGWDVKTVEWHPFKSLIVSGSKDNL--IKLWDPRTGNSLSTLYGHKNTVV 309
            Q +M  ++ F AH   PIRG+SF PTDSKFASCSDD TVR+WD+    EER L GHG DV+ V+WHP KSL+ SGSKDN   +KLWDPRTGNSL+TL+ HK+TV+
Sbjct:  224 QSNMNNVKMFQAH-KEPIRGISFCPTDSKFASCSDDGTVRVWDFMRCHEERILRGHGADVRCVDWHPQKSLLASGSKDNQQPVKLWDPRTGNSLATLHAHKHTVM 327
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BLAST of mRNA_H-paniculata_contig16913.3873.1 vs. uniprot
Match: A0A0P4VK08_9HEMI (Putative polyadenylation factor i complex subunit pfs2 (Fragment) n=2 Tax=Rhodnius TaxID=13248 RepID=A0A0P4VK08_9HEMI)

HSP 1 Score: 138 bits (347), Expect = 3.050e-36
Identity = 64/105 (60.95%), Postives = 80/105 (76.19%), Query Frame = 1 
Query:    1 QPSMTPIRHFLAHGANPIRGLSFGPTDSKFASCSDDSTVRIWDWEYYKEERALTGHGWDVKTVEWHPFKSLIVSGSKDNL--IKLWDPRTGNSLSTLYGHKNTVV 309
            Q +M  ++ FLAH    IRG+SF PTDSKFASCSDD TV+IWD+   +EER L GHG DVK + WHP K LI+SGSKDN   +KLWDP+TG SL+T++ HK+TV+
Sbjct:  156 QSNMNNVKMFLAH-QEAIRGISFSPTDSKFASCSDDGTVKIWDFYRCQEERILRGHGADVKCIHWHPQKGLIISGSKDNQQPVKLWDPKTGTSLATIHAHKSTVM 259
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BLAST of mRNA_H-paniculata_contig16913.3873.1 vs. uniprot
Match: G4T5A0_SERID (Polyadenylation factor subunit 2 n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4T5A0_SERID)

HSP 1 Score: 135 bits (339), Expect = 3.270e-36
Identity = 55/85 (64.71%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:   52 IRGLSFGPTDSKFASCSDDSTVRIWDWEYYKEERALTGHGWDVKTVEWHPFKSLIVSGSKDNLIKLWDPRTGNSLSTLYGHKNTV 306
            IRG+SF P D++F +CSDDST++IW +   +EER LTGHGWDV+ V+WHP K L+ SGSKDNLIK WDPRTG  L+TL+ HKNT+
Sbjct:   28 IRGISFSPNDARFVTCSDDSTLKIWAFNESREERTLTGHGWDVRCVQWHPSKGLLASGSKDNLIKFWDPRTGTCLTTLHQHKNTI 112
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BLAST of mRNA_H-paniculata_contig16913.3873.1 vs. uniprot
Match: A0A023F3M6_TRIIF (Putative polyadenylation factor i complex subunit pfs2 (Fragment) n=2 Tax=Triatoma infestans TaxID=30076 RepID=A0A023F3M6_TRIIF)

HSP 1 Score: 138 bits (347), Expect = 9.620e-36
Identity = 64/105 (60.95%), Postives = 80/105 (76.19%), Query Frame = 1 
Query:    1 QPSMTPIRHFLAHGANPIRGLSFGPTDSKFASCSDDSTVRIWDWEYYKEERALTGHGWDVKTVEWHPFKSLIVSGSKDNL--IKLWDPRTGNSLSTLYGHKNTVV 309
            Q +M  ++ FLAH    IRG+SF PTDSKFASCSDD TV+IWD+   +EER L GHG DVK + WHP K LI+SGSKDN   +KLWDP+TG SL+T++ HK+TV+
Sbjct:  201 QSNMNNVKMFLAH-QEAIRGISFSPTDSKFASCSDDGTVKIWDFYRCQEERILRGHGADVKCIHWHPQKGLIISGSKDNQQPVKLWDPKTGTSLATIHAHKSTVM 304
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BLAST of mRNA_H-paniculata_contig16913.3873.1 vs. uniprot
Match: A0A8H8SNN8_9AGAM (Polyadenylation factor subunit 2 n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8SNN8_9AGAM)

HSP 1 Score: 136 bits (343), Expect = 1.250e-35
Identity = 58/98 (59.18%), Postives = 76/98 (77.55%), Query Frame = 1 
Query:    1 QPSMTPIRHFLAHGANPIRGLSFGPTDSKFASCSDDSTVRIWDWEYYKEERALTGHGWDVKTVEWHPFKSLIVSGSKDNLIKLWDPRTGNSLSTLYGH 294
            QP+M  +  + AH    +RG+SF P DS+FASC DD++VR+W +E  +EER +TGHGWDVK +EWHP + L+VSGSKDNL+K WDPRTG +LSTL+ H
Sbjct:  194 QPNMNNLVTWQAH-REAVRGVSFAPGDSRFASCGDDASVRVWAFEEMREERCITGHGWDVKCIEWHPTRGLLVSGSKDNLVKFWDPRTGQNLSTLHQH 290
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BLAST of mRNA_H-paniculata_contig16913.3873.1 vs. uniprot
Match: A0A0A9XQF1_LYGHE (Pre-mRNA 3' end processing protein WDR33 (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XQF1_LYGHE)

HSP 1 Score: 137 bits (346), Expect = 1.310e-35
Identity = 63/105 (60.00%), Postives = 80/105 (76.19%), Query Frame = 1 
Query:    1 QPSMTPIRHFLAHGANPIRGLSFGPTDSKFASCSDDSTVRIWDWEYYKEERALTGHGWDVKTVEWHPFKSLIVSGSKDNL--IKLWDPRTGNSLSTLYGHKNTVV 309
            Q +M  ++ F+AH    IRG+SF P DSKFASCSDD T++IWD+   +EERAL GHG DVK V WHP K LI+SGSKDN   +KLWDP+TG SL+T++ HK+TV+
Sbjct:  204 QSNMNNVKMFMAH-QEAIRGISFSPLDSKFASCSDDGTIKIWDFYRCQEERALRGHGADVKCVHWHPHKGLIISGSKDNQQPVKLWDPKTGTSLATIHAHKSTVM 307
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BLAST of mRNA_H-paniculata_contig16913.3873.1 vs. uniprot
Match: A0A0A9XKI4_LYGHE (Pre-mRNA 3' end processing protein WDR33 n=4 Tax=Mirini TaxID=236659 RepID=A0A0A9XKI4_LYGHE)

HSP 1 Score: 137 bits (346), Expect = 1.330e-35
Identity = 63/105 (60.00%), Postives = 80/105 (76.19%), Query Frame = 1 
Query:    1 QPSMTPIRHFLAHGANPIRGLSFGPTDSKFASCSDDSTVRIWDWEYYKEERALTGHGWDVKTVEWHPFKSLIVSGSKDNL--IKLWDPRTGNSLSTLYGHKNTVV 309
            Q +M  ++ F+AH    IRG+SF P DSKFASCSDD T++IWD+   +EERAL GHG DVK V WHP K LI+SGSKDN   +KLWDP+TG SL+T++ HK+TV+
Sbjct:  204 QSNMNNVKMFMAH-QEAIRGISFSPLDSKFASCSDDGTIKIWDFYRCQEERALRGHGADVKCVHWHPHKGLIISGSKDNQQPVKLWDPKTGTSLATIHAHKSTVM 307
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BLAST of mRNA_H-paniculata_contig16913.3873.1 vs. uniprot
Match: A0A8I6RUI8_CIMLE (Uncharacterized protein n=1 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6RUI8_CIMLE)

HSP 1 Score: 137 bits (345), Expect = 1.750e-35
Identity = 62/105 (59.05%), Postives = 80/105 (76.19%), Query Frame = 1 
Query:    1 QPSMTPIRHFLAHGANPIRGLSFGPTDSKFASCSDDSTVRIWDWEYYKEERALTGHGWDVKTVEWHPFKSLIVSGSKDNL--IKLWDPRTGNSLSTLYGHKNTVV 309
            Q +M  ++ F+AH    IRG+SF PTDSKFASCSDD T+++WD+   +EER L GHG DVK V WHP K LI+SGSKDN   +KLWDP+TG SL+T++ HK+TV+
Sbjct:  206 QSNMNNVKMFMAH-QEAIRGISFSPTDSKFASCSDDGTIKVWDFYRCQEERTLRGHGADVKCVHWHPQKGLIISGSKDNQQPVKLWDPKTGTSLATIHAHKSTVM 309
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16913.3873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0XW64_AURAN1.800e-4058.65Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A6H5JUK6_9PHAE2.080e-3892.42CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A3S1BDQ9_ELYCH5.990e-3763.81Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]
A0A0P4VK08_9HEMI3.050e-3660.95Putative polyadenylation factor i complex subunit ... [more]
G4T5A0_SERID3.270e-3664.71Polyadenylation factor subunit 2 n=1 Tax=Serendipi... [more]
A0A023F3M6_TRIIF9.620e-3660.95Putative polyadenylation factor i complex subunit ... [more]
A0A8H8SNN8_9AGAM1.250e-3559.18Polyadenylation factor subunit 2 n=2 Tax=Ceratobas... [more]
A0A0A9XQF1_LYGHE1.310e-3560.00Pre-mRNA 3' end processing protein WDR33 (Fragment... [more]
A0A0A9XKI4_LYGHE1.330e-3560.00Pre-mRNA 3' end processing protein WDR33 n=4 Tax=M... [more]
A0A8I6RUI8_CIMLE1.750e-3559.05Uncharacterized protein n=1 Tax=Cimex lectularius ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16913contigH-paniculata_contig16913:1143..2271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.9
Seed ortholog evalue8.1e-32
Seed eggNOG ortholog44056.XP_009032631.1
Preferred nameWDR33
KEGG koko:K15542
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000785,GO:0000790,GO:0001650,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005847,GO:0005849,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0007276,GO:0007283,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0018130,GO:0019438,GO:0019953,GO:0022414,GO:0031123,GO:0031124,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032774,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044454,GO:0044464,GO:0044703,GO:0045184,GO:0046483,GO:0046907,GO:0048232,GO:0048609,GO:0050657,GO:0050658,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090305,GO:0090501,GO:0097659,GO:0098787,GO:0098789,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.mRNA cleavage
EggNOG OGsCOG2319@1,KOG0284@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Exons2
Model size309
Cds size300
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16913.3873.1prot_H-paniculata_contig16913.3873.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16913 1143..2262 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929339.086621-CDS-H-paniculata_contig16913:1142..13371622929339.086621-CDS-H-paniculata_contig16913:1142..1337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16913 1143..1337 -
1691480821.2683585-CDS-H-paniculata_contig16913:1142..13371691480821.2683585-CDS-H-paniculata_contig16913:1142..1337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16913 1143..1337 -
1622929339.1044188-CDS-H-paniculata_contig16913:2157..22621622929339.1044188-CDS-H-paniculata_contig16913:2157..2262Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16913 2158..2262 -
1691480821.278741-CDS-H-paniculata_contig16913:2157..22621691480821.278741-CDS-H-paniculata_contig16913:2157..2262Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16913 2158..2262 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929339.1191053-UTR-H-paniculata_contig16913:2262..22711622929339.1191053-UTR-H-paniculata_contig16913:2262..2271Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16913 2263..2271 -
1691480821.2864368-UTR-H-paniculata_contig16913:2262..22711691480821.2864368-UTR-H-paniculata_contig16913:2262..2271Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16913 2263..2271 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16913.3873.1

>prot_H-paniculata_contig16913.3873.1 ID=prot_H-paniculata_contig16913.3873.1|Name=mRNA_H-paniculata_contig16913.3873.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
MTPIRHFLAHGANPIRGLSFGPTDSKFASCSDDSTVRIWDWEYYKEERAL
TGHGWDVKTVEWHPFKSLIVSGSKDNLIKLWDPRTGNSLSTLYGHKNTVV
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mRNA from alignment at H-paniculata_contig16913:1143..2271-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16913.3873.1 ID=mRNA_H-paniculata_contig16913.3873.1|Name=mRNA_H-paniculata_contig16913.3873.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1129bp|location=Sequence derived from alignment at H-paniculata_contig16913:1143..2271- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCCGTCTATGACGCCGATTCGGCATTTCCTGGCTCACGGTGCCAACCC
CATCCGAGGCCTGAGCTTCGGGCCTACGGATTCCAAGTTCGCTTCTTGTT
CCGACGATTCCACGGTAAGTGTTTTTTTTTTGTTTTTTTTGGCTGTGGTT
GTGTTTTTTGTGTTACTCGTTGTCTTTTGACTGTTGTGTTGGCTATGTAT
TATGTATGATATTGTTTAGTTAGGGGCGTGGCATGGCGTGGCGCGGCTAG
GCTGCGTTGAGTTATGCCGAGAAAGAGTATATCATCTAAATGTCCTCGGA
AAACACGAGGACCATGACATCACTCTTGTCGTTTAATTAGTTATTGGTGC
TGGCGATGCTGGTGGTGCTTCTCCTGCTGTTGTCGTCGTTGGTGCTGTTG
ATGCTATTGAACTCGTATTTGGCCACCGGCAACCCCAGCCATCATTAAAA
AAAGATAGAGGTAGAGGGGGGGGGGGTAGTACTTACTCAGCTGTAGGAGT
CGCCGGATTTCGTCAACTTTGAAGAGGCATAAAAAACAAAACACATATAT
CTACGTAGGTGCGCATACACTTGAGTCAAGTACATACTACCATATAGTAA
AAAAATGTGACACTGTAAAGCTACTATTACGGAGGAATATAATAATCGGG
AGCATTTTTTATGGTTTTTCGGAAACTGATTTTTTTTCCCCCCCCGTTGG
TCTACAGATTTTGGCTTCTAGCTGAAAGCAAAAACACACTCTAAAAACAC
TTGCACAGGCATGCAGAAACCGATTGGTGCATATCGTGTTGCATGAGTTA
CACCTCAAAATGTCAATTTTCTAATTTGCTCCTCATTATTATGTTCCTCC
GTAATAATTTTTTAACTTCGAAATGTGATGTACAACACCTTTATGTACAC
ACACACACACACACACACACACACACACGTGTAGGTGCGTATATGGGACT
GGGAGTACTATAAAGAGGAGCGAGCGCTGACCGGCCACGGCTGGGACGTG
AAAACGGTGGAGTGGCATCCTTTCAAGTCTCTCATCGTGTCGGGCAGTAA
GGACAACCTGATCAAGCTCTGGGACCCCCGCACCGGGAACAGTCTCTCCA
CCCTCTACGGACACAAGAACACTGTGGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig16913:1143..2271-

>mRNA_H-paniculata_contig16913.3873.1 ID=mRNA_H-paniculata_contig16913.3873.1|Name=mRNA_H-paniculata_contig16913.3873.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig16913:1143..2271- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGCCGATTCGGCATTTCCTGGCTCACGGTGCCAACCCCATCCGAGG
CCTGAGCTTCGGGCCTACGGATTCCAAGTTCGCTTCTTGTTCCGACGATT
CCACGATGACGCCGATTCGGCATTTCCTGGCTCACGGTGCCAACCCCATC
CGAGGCCTGAGCTTCGGGCCTACGGATTCCAAGTTCGCTTCTTGTTCCGA
CGATTCCACGGTGCGTATATGGGACTGGGAGTACTATAAAGAGGAGCGAG
CGCTGACCGGCCACGGCTGGGACGTGAAAACGGTGGAGTGGCATCCTTTC
AAGTCTCTCATCGTGTCGGGCAGTAAGGACAACCTGATCAAGCTCTGGGA
CCCCCGCACCGGGAACAGTCTCTCCACCCTCTACGGACACAAGAACACTG
TGGTCGTGCGTATATGGGACTGGGAGTACTATAAAGAGGAGCGAGCGCTG
ACCGGCCACGGCTGGGACGTGAAAACGGTGGAGTGGCATCCTTTCAAGTC
TCTCATCGTGTCGGGCAGTAAGGACAACCTGATCAAGCTCTGGGACCCCC
GCACCGGGAACAGTCTCTCCACCCTCTACGGACACAAGAACACTGTGGTC
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