mRNA_H-paniculata_contig16905.3871.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16905.3871.1
Unique NamemRNA_H-paniculata_contig16905.3871.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16905.3871.1 vs. uniprot
Match: D7FPS9_ECTSI (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPS9_ECTSI)

HSP 1 Score: 337 bits (864), Expect = 4.750e-112
Identity = 168/224 (75.00%), Postives = 192/224 (85.71%), Query Frame = 2 
Query:    2 RSLQHVKNKWAEEEFYEFCCDQLKAIRQDLTVQGIENELTVDVYQTHGRISLESGDMDEYNQCQSRLRELHLAGVVGVRMDEFTGYRLVYSLYRENHREVNATMMALSPEQRKGEGVMHALKVVKAYHMGDYCRFFGLYLAAPNMTSYMMDFLVMRMRKHAFRAMVKAFLPTIPLAYLQDQLQFHQEKLLLEFLERDVCATLVKPTAGGEPAVDVKATRAAWAQ 673
            RSL+HVK KWA EE YEF CDQLKAIRQDLTVQ IE+ LTVDVYQTHGRI+LESGDM+EYNQCQSRL+ELHL+GV GV MDEFTGYRL+YSLYRENHREVNATMM LS E R+GEGV HAL VVK+YHMGDYC FF LY AAP M+SY+MDFLVMRMR+ A + MVKA+LPTIPL+++Q+QL+F     LLEF+++DV A L  P AG E A+DVKATRAAWA+
Sbjct:  117 RSLRHVKRKWATEEDYEFVCDQLKAIRQDLTVQAIEDGLTVDVYQTHGRIALESGDMEEYNQCQSRLKELHLSGVPGVSMDEFTGYRLIYSLYRENHREVNATMMDLSQEARQGEGVAHALGVVKSYHMGDYCTFFRLYFAAPAMSSYLMDFLVMRMRRRAIKTMVKAYLPTIPLSFIQEQLRFDSRDSLLEFIDKDVEAALAAPKAGEEAAIDVKATRAAWAR 340
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BLAST of mRNA_H-paniculata_contig16905.3871.1 vs. uniprot
Match: A0A8H7PYX3_MORIS (SAC3_GANP domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PYX3_MORIS)

HSP 1 Score: 182 bits (463), Expect = 1.010e-50
Identity = 93/195 (47.69%), Postives = 129/195 (66.15%), Query Frame = 2 
Query:    2 RSLQHVKNKWAEEEFYEFCCDQLKAIRQDLTVQGIENELTVDVYQTHGRISLESGDMDEYNQCQSRLRELHLAGVVGVRMDEFTGYRLVYSLYRENHREVNATMMALSPEQRKGEGVMHALKVVKAYHMGDYCRFFGLYLAAPNMTSYMMDFLVMRMRKHAFRAMVKAFLPTIPLAYLQDQLQFHQEKLLLEFLE 586
            ++L  +K KW +EE Y + CDQ K++RQDLTVQ I+N+ TV VY+ H RI+LE GD+ EYNQCQ++LREL+  G+ G R +EF  YRL+Y LY +NH ++NA M  L+PE++    + HAL V  +   G+Y RFF LYL APNM  Y+MD  + R R  A RA+ KAF P +  +Y+  +L    +  L E L+
Sbjct:  199 KTLNLLKKKWRQEENYSYICDQFKSVRQDLTVQRIQNDFTVQVYEIHARIALEKGDLGEYNQCQTQLRELYKKGIPG-RENEFIAYRLLYLLYAQNHADINALMRTLTPERKSDPAIAHALMVRSSMATGNYHRFFKLYLQAPNMGGYLMDKFMERERIIALRAICKAFRPMVETSYIIQELALGTQLALFEVLK 392
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BLAST of mRNA_H-paniculata_contig16905.3871.1 vs. uniprot
Match: A0A162NBM1_PHYB8 (PCI domain-containing protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162NBM1_PHYB8)

HSP 1 Score: 177 bits (450), Expect = 1.410e-50
Identity = 88/194 (45.36%), Postives = 132/194 (68.04%), Query Frame = 2 
Query:    2 RSLQHVKNKWAEEEFYEFCCDQLKAIRQDLTVQGIENELTVDVYQTHGRISLESGDMDEYNQCQSRLRELHLAGVVGVRMDEFTGYRLVYSLYRENHREVNATMMALSPEQRKGEGVMHALKVVKAYHMGDYCRFFGLYLAAPNMTSYMMDFLVMRMRKHAFRAMVKAFLPTIPLAYLQDQLQFHQEKLLLEFL 583
            ++L+ +K+KW  E+ Y + CDQ K++RQDLTVQ I +E TV VY+ H RI+LE GD+ EYNQCQS+L++L++ G+ G  M EFT YR++Y L+ +N  ++N+ M  ++PEQ++ E V HAL+V       +Y RFF LY +APNM  Y+MD  + R R  A   + KA  P +PL+++Q +L F   + L++FL
Sbjct:   39 QTLELLKDKWKAEQNYTYICDQFKSMRQDLTVQRIRDEFTVQVYEIHARIALEKGDLGEYNQCQSQLKQLYMLGIPGNVM-EFTAYRILYFLHTQNWSDINSIMAEVTPEQKRDEAVQHALQVRSCLATSNYHRFFRLYTSAPNMGGYLMDQFIERERVQALIILCKACRPDLPLSFIQTELAFEDHEQLIKFL 231
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BLAST of mRNA_H-paniculata_contig16905.3871.1 vs. uniprot
Match: UPI001F03BA78 (LOW QUALITY PROTEIN: leukocyte receptor cluster member 8 homolog n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03BA78)

HSP 1 Score: 184 bits (468), Expect = 4.530e-49
Identity = 91/194 (46.91%), Postives = 136/194 (70.10%), Query Frame = 2 
Query:    2 RSLQHVKNKWAEEEFYEFCCDQLKAIRQDLTVQGIENELTVDVYQTHGRISLESGDMDEYNQCQSRLRELHLAGVVGVRMDEFTGYRLVYSLYRENHREVNATMMALSPEQRKGEGVMHALKVVKAYHMGDYCRFFGLYLAAPNMTSYMMDFLVMRMRKHAFRAMVKAFLPTIPLAYLQDQLQFHQEKLLLEFL 583
            +SL+ VKN W  ++ Y F C+QLK+IRQDLTVQGI N+ T+ +Y+TH R++LE GD  E+NQCQS+L+ L+ + + G R +EFT YR++Y +Y +N RE+  TM AL+ E++K + + HALK+  ++ + +Y  FF LY AAPNM  Y++D  V R RK A + +VK++ P +P+A++Q +L F  E    EFL
Sbjct:  605 KSLEMVKNDWKTKQDYPFACEQLKSIRQDLTVQGIRNDFTILIYETHARLALEKGDSAEFNQCQSQLKTLYCSSLSGNR-NEFTAYRILYLVYTQNTRELTTTMAALTVEEKKDKFISHALKIRSSWSLCNYHSFFQLYSAAPNMGGYLLDLFVERERKKAMKILVKSYRPFLPVAFVQTELAFGDETTCREFL 797
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BLAST of mRNA_H-paniculata_contig16905.3871.1 vs. uniprot
Match: A0A4P6DA58_RHOPR (Putative leucine permease transcriptional regulator (Fragment) n=2 Tax=Rhodnius TaxID=13248 RepID=A0A4P6DA58_RHOPR)

HSP 1 Score: 180 bits (457), Expect = 1.290e-48
Identity = 88/196 (44.90%), Postives = 132/196 (67.35%), Query Frame = 2 
Query:    2 RSLQHVKNKWAEEEFYEFCCDQLKAIRQDLTVQGIENELTVDVYQTHGRISLESGDMDEYNQCQSRLRELHLAGVVGVRMDEFTGYRLVYSLYRENHREVNATMMALSPEQRKGEGVMHALKVVKAYHMGDYCRFFGLYLAAPNMTSYMMDFLVMRMRKHAFRAMVKAFLPTIPLAYLQDQLQFHQEKLLLEFLER 589
            +SL+ VK KW E + Y +CC+QLK+IRQDLTVQGI ++ +V VY+THGRI+LE GD  E+NQCQS+LR LH          EF  YRL+Y ++ +   ++++ +  LS E +K E + HA+ VVKA+ +G Y + F LY  AP M+SY+MD  ++R R  A + +VKA+ P++P+ +++D+L F  +    +FL R
Sbjct:  362 KSLEMVKGKWKENKDYHYCCEQLKSIRQDLTVQGIRDDFSVKVYETHGRIALEKGDHAEFNQCQSQLRILHTEVKASQNRAEFVAYRLLYYVFTKEFLDLSSLVSCLSEEDKKDECISHAVSVVKAWLIGSYHKIFKLYQTAPRMSSYLMDLFMLRERTCALKIIVKAYRPSVPIDFIRDELAFEADTETQDFLTR 557
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BLAST of mRNA_H-paniculata_contig16905.3871.1 vs. uniprot
Match: UPI0006B0B5EF (leukocyte receptor cluster member 8 homolog isoform X1 n=3 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0B5EF)

HSP 1 Score: 182 bits (463), Expect = 1.290e-48
Identity = 87/196 (44.39%), Postives = 138/196 (70.41%), Query Frame = 2 
Query:    2 RSLQHVKNKWAEEEFYEFCCDQLKAIRQDLTVQGIENELTVDVYQTHGRISLESGDMDEYNQCQSRLRELHLAGVVGVRMDEFTGYRLVYSLYRENHREVNATMMALSPEQRKGEGVMHALKVVKAYHMGDYCRFFGLYLAAPNMTSYMMDFLVMRMRKHAFRAMVKAFLPTIPLAYLQDQLQFHQEKLLLEFLER 589
            +SL  VK+ W + + Y + CDQLK+IRQDLTVQG+ +  TV VY+TH RI+LE GD +E+NQCQ++L+ L+L   +G R+ EFTGYR++Y ++ ++  E+ + +  LS  +++ E + HALK++ A+ +G+Y RFF LY  AP M+ Y++D+   R RKHA +AM+K++ P +P+AY+Q ++ F      L+FL +
Sbjct:  530 KSLTMVKDHWIKNQDYHYACDQLKSIRQDLTVQGVRDAFTVQVYETHARIALEKGDREEFNQCQTQLKALYLETGIGNRL-EFTGYRILYYIFSKSTLELRSVLSCLSAAEKENEVISHALKLMFAWKIGNYHRFFKLYQNAPKMSGYVIDWFAERERKHAIKAMIKSYRPVLPVAYVQSEVAFDNRDDCLQFLRQ 724
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BLAST of mRNA_H-paniculata_contig16905.3871.1 vs. uniprot
Match: G7DSI1_MIXOS (PCI domain-containing protein n=1 Tax=Mixia osmundae (strain CBS 9802 / IAM 14324 / JCM 22182 / KY 12970) TaxID=764103 RepID=G7DSI1_MIXOS)

HSP 1 Score: 176 bits (447), Expect = 2.420e-48
Identity = 93/194 (47.94%), Postives = 125/194 (64.43%), Query Frame = 2 
Query:    2 RSLQHVKNKWAEEEFYEFCCDQLKAIRQDLTVQGIENELTVDVYQTHGRISLESGDMDEYNQCQSRLRELHLAGVVGVRMDEFTGYRLVYSLYRENHREVNATMMALSPEQRKGEGVMHALKVVKAYHMGDYCRFFGLYLAAPNMTSYMMDFLVMRMRKHAFRAMVKAFLPTIPLAYLQDQLQFHQEKLLLEFL 583
            R+L+ +K KW  E+ Y + CDQ K++RQDLTVQ I+N+ TV VY+ H RI+LE GD+ EYNQCQS+LREL+  G+VG ++ EF  YRL+Y L+  N  E+ + +  LS  +R  EG+ HAL+V  A    +YC FF LYL AP M  YMMD    R R  A   M KA+  ++PL +L  QL F  E   ++FL
Sbjct:  191 RTLEMLKTKWRSEQNYNYVCDQFKSLRQDLTVQRIKNDFTVTVYEIHARIALEKGDLGEYNQCQSQLRELYKHGLVGHQL-EFVAYRLLYLLHTRNRSELTSVLADLSEVERADEGIRHALQVRSALATSNYCSFFKLYLVAPKMGGYMMDHFAPRERLQALLTMTKAY-KSVPLTFLVSQLAFDTESETVQFL 382
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BLAST of mRNA_H-paniculata_contig16905.3871.1 vs. uniprot
Match: A0A1X2HA78_SYNRA (SAC3/GANP/Nin1/mts3/eIF-3 p25 family-domain-containing protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HA78_SYNRA)

HSP 1 Score: 177 bits (448), Expect = 3.620e-48
Identity = 89/195 (45.64%), Postives = 133/195 (68.21%), Query Frame = 2 
Query:    5 SLQHVKNKWAEEEFYEFCCDQLKAIRQDLTVQGIENELTVDVYQTHGRISLESGDMDEYNQCQSRLRELHLAGVVGVRMDEFTGYRLVYSLYRENHREVNATMMALSPEQRKGEGVMHALKVVKAYHMGDYCRFFGLYLAAPNMTSYMMDFLVMRMRKHAFRAMVKAFLPTIPLAYLQDQLQFHQEKLLLEFLER 589
            +L+ +K KW+ E  Y + CDQ K++RQDLTVQ I ++ TV VY+ H RI+LE GD+ EYNQCQ++L+EL+  G+ G +  EF  YR++Y L+ +N  ++NA M+ L+ EQR+ + V HAL+V  A    +Y RFF LY AAPNM  ++MD  + R R  A   + KAF PT+P+A++Q +L F  E+ + +FL++
Sbjct:  243 TLELLKEKWSSESNYTYICDQFKSMRQDLTVQRIRDDFTVRVYEIHARIALEKGDLGEYNQCQTQLKELYALGIQG-QSTEFAAYRILYFLHTQNWSDINACMVELTEEQRQSDEVQHALQVRSALATSNYHRFFKLYHAAPNMGGFLMDQFIERERVRALIILCKAFRPTLPIAFIQPELDFVTEEEISKFLKK 436
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BLAST of mRNA_H-paniculata_contig16905.3871.1 vs. uniprot
Match: UPI00106D6615 (leukocyte receptor cluster member 8 homolog n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D6615)

HSP 1 Score: 181 bits (459), Expect = 5.040e-48
Identity = 88/195 (45.13%), Postives = 135/195 (69.23%), Query Frame = 2 
Query:    2 RSLQHVKNKWAEEEFYEFCCDQLKAIRQDLTVQGIENELTVDVYQTHGRISLESGDMDEYNQCQSRLRELHLAGVVGVRMDEFTGYRLVYSLYRENHREVNATMMALSPEQRKGEGVMHALKVVKAYHMGDYCRFFGLYLAAPNMTSYMMDFLVMRMRKHAFRAMVKAFLPTIPLAYLQDQLQFHQEKLLLEFLE 586
            +SL+ VK+ W  ++ Y + C+QLKAIRQDLTVQGI N+ TV +Y+TH R++LE GD  E+NQCQS+L+ L+  G+ G R +EFT YR++Y +Y ++ RE+  TM AL+ E++    + HALK+  A+ + +Y  FF LY +APNM  Y++D  V R R+ A + ++K++ P +P+A++Q +L F  E    EFL+
Sbjct:  538 KSLEMVKDDWRTKQDYRYACEQLKAIRQDLTVQGIRNDFTVLIYETHARLALEKGDSAEFNQCQSQLKSLYSGGLCGHR-NEFTAYRILYLIYTKDTRELTMTMSALTAEEKDEPFIKHALKMRSAWSLSNYHSFFQLYSSAPNMGGYLLDLFVQRERERAIKMLIKSYRPLLPVAFVQSELAFADEATCQEFLK 731
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BLAST of mRNA_H-paniculata_contig16905.3871.1 vs. uniprot
Match: A0A1B6M2U9_9HEMI (PCI domain-containing protein (Fragment) n=2 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6M2U9_9HEMI)

HSP 1 Score: 170 bits (431), Expect = 7.670e-48
Identity = 86/196 (43.88%), Postives = 131/196 (66.84%), Query Frame = 2 
Query:    2 RSLQHVKNKWAEEEFYEFCCDQLKAIRQDLTVQGIENELTVDVYQTHGRISLESGDMDEYNQCQSRLRELHLAGVVGVRMDEFTGYRLVYSLYRENHREVNATMMALSPEQRKGEGVMHALKVVKAYHMGDYCRFFGLYLAAPNMTSYMMDFLVMRMRKHAFRAMVKAFLPTIPLAYLQDQLQFHQEKLLLEFLER 589
            +SL  VK +W   + Y + C+QLK+IRQDLTVQG+ ++LTV VY+TH RI+LE GD  E+NQCQS+L+ L+   +      EFT YR++Y ++ + + ++N  M AL+ + R  E V HAL V  A+ +G+Y R F LY AAP M+SY+MD+ + R RK A + +VKA+  T+P+++L  +L F  + +  +FL +
Sbjct:   44 QSLSRVKERWVLNQDYHYACEQLKSIRQDLTVQGVRDKLTVSVYETHARIALEKGDHAEFNQCQSQLKLLY-EDLPTENQQEFTAYRILYYIFTKENMDLNTVMTALTEDDRGDECVSHALNVRSAWSLGNYHRLFKLYRAAPRMSSYLMDWFLPRERKLALKTVVKAYRQTLPVSFLTQELAFQTDVVCRQFLSQ 238
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16905.3871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPS9_ECTSI4.750e-11275.00PCI domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A8H7PYX3_MORIS1.010e-5047.69SAC3_GANP domain-containing protein n=1 Tax=Mortie... [more]
A0A162NBM1_PHYB81.410e-5045.36PCI domain-containing protein n=1 Tax=Phycomyces b... [more]
UPI001F03BA784.530e-4946.91LOW QUALITY PROTEIN: leukocyte receptor cluster me... [more]
A0A4P6DA58_RHOPR1.290e-4844.90Putative leucine permease transcriptional regulato... [more]
UPI0006B0B5EF1.290e-4844.39leukocyte receptor cluster member 8 homolog isofor... [more]
G7DSI1_MIXOS2.420e-4847.94PCI domain-containing protein n=1 Tax=Mixia osmund... [more]
A0A1X2HA78_SYNRA3.620e-4845.64SAC3/GANP/Nin1/mts3/eIF-3 p25 family-domain-contai... [more]
UPI00106D66155.040e-4845.13leukocyte receptor cluster member 8 homolog n=1 Ta... [more]
A0A1B6M2U9_9HEMI7.670e-4843.88PCI domain-containing protein (Fragment) n=2 Tax=G... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16905contigH-paniculata_contig16905:2..4499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score248.4
Seed ortholog evalue2.4e-63
Seed eggNOG ortholog2880.D7FPS9
KEGG koko:K12196
KEGG Pathwayko04144,ko04217,map04144,map04217
KEGG ModuleM00412
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transcription, DNA-templated
EggNOG OGsKOG1861@1,KOG1861@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Exons5
Model size950
Cds size522
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929338.8611083-UTR-H-paniculata_contig16905:1..2601622929338.8611083-UTR-H-paniculata_contig16905:1..260Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16905 2..260 -
1691480821.1876647-UTR-H-paniculata_contig16905:1..2601691480821.1876647-UTR-H-paniculata_contig16905:1..260Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16905 2..260 -
1622929338.9419935-UTR-H-paniculata_contig16905:3553..36081622929338.9419935-UTR-H-paniculata_contig16905:3553..3608Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16905 3554..3608 -
1691480821.2306874-UTR-H-paniculata_contig16905:3553..36081691480821.2306874-UTR-H-paniculata_contig16905:3553..3608Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16905 3554..3608 -
1622929338.9546528-UTR-H-paniculata_contig16905:4385..44991622929338.9546528-UTR-H-paniculata_contig16905:4385..4499Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16905 4386..4499 -
1691480821.2385662-UTR-H-paniculata_contig16905:4385..44991691480821.2385662-UTR-H-paniculata_contig16905:4385..4499Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16905 4386..4499 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929338.877628-CDS-H-paniculata_contig16905:260..4131622929338.877628-CDS-H-paniculata_contig16905:260..413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16905 261..413 -
1691480821.1968496-CDS-H-paniculata_contig16905:260..4131691480821.1968496-CDS-H-paniculata_contig16905:260..413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16905 261..413 -
1622929338.893577-CDS-H-paniculata_contig16905:1130..12271622929338.893577-CDS-H-paniculata_contig16905:1130..1227Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16905 1131..1227 -
1691480821.2043498-CDS-H-paniculata_contig16905:1130..12271691480821.2043498-CDS-H-paniculata_contig16905:1130..1227Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16905 1131..1227 -
1622929338.912815-CDS-H-paniculata_contig16905:2265..24121622929338.912815-CDS-H-paniculata_contig16905:2265..2412Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16905 2266..2412 -
1691480821.2150407-CDS-H-paniculata_contig16905:2265..24121691480821.2150407-CDS-H-paniculata_contig16905:2265..2412Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16905 2266..2412 -
1622929338.9263582-CDS-H-paniculata_contig16905:3428..35531622929338.9263582-CDS-H-paniculata_contig16905:3428..3553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16905 3429..3553 -
1691480821.2228436-CDS-H-paniculata_contig16905:3428..35531691480821.2228436-CDS-H-paniculata_contig16905:3428..3553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16905 3429..3553 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16905.3871.1prot_H-paniculata_contig16905.3871.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16905 261..3553 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16905.3871.1

>prot_H-paniculata_contig16905.3871.1 ID=prot_H-paniculata_contig16905.3871.1|Name=mRNA_H-paniculata_contig16905.3871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
MDEYNQCQSRLRELHLAGVVGVRMDEFTGYRLVYSLYRENHREVNATMMA
LSPEQRKGEGVMHALKVVKAYHMGDYCRFFGLYLAAPNMTSYMMDFLVMR
MRKHAFRAMVKAFLPTIPLAYLQDQLQFHQEKLLLEFLERDVCATLVKPT
AGGEPAVDVKATRAAWAQQGMWS*
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mRNA from alignment at H-paniculata_contig16905:2..4499-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16905.3871.1 ID=mRNA_H-paniculata_contig16905.3871.1|Name=mRNA_H-paniculata_contig16905.3871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4498bp|location=Sequence derived from alignment at H-paniculata_contig16905:2..4499- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGTCTTTGCAGCACGTGAAGAACAAATGGGCAGAGGAAGAGTTCTACG
AGTTCTGTTGCGATCAGCTCAAGGCCATCCGCCAGGACCTCACGGTGCAG
GGGATCGAAAATGAGTGAGTATGAGTAAGGAATCAAAACAGATGGCACAA
TTGTAAACAAGGCGTCGATTAGAAAAAAACATAATTTGAAAAAAAAAAAG
TTGAATATCTTGTGAATGTCTCGACCGTTTCAATCCCTAAACTCAGATGG
ATTTGTAATGTCTACTACTGATAGTACCGTCTGTACATACTGTAGATCCT
TTCTGTCAACCGTCGTGCACGCGCCACAACTTTTCTGAAAAAATCTCAGA
GTTGTAGACGTTTTCTGTCCATGCTTCAGTTTTTGTTTGCTTTTTGACGA
CGTGCACACGAGATATTTGTCATTTGTCATTCTTCTTTTGCTTGTGCCTT
TTACACCATGGTCTTTGTGGGAACGTGCAAACACACGTGCGCAGTTTCAC
TCATCCAACGGCTATATACCACTCAGAGTCGTTGTCGTCGAGTCGTTTGC
TTACTCGTGAGCACTTGAGGGAATTAGTCGACTAAAGTGGGCACCATACT
TTCCAGTAAAACACGCAACAATCAGCTGCAGTTCAAAAATCCTCCAAACC
ACAACGTGAGCCTCTTGGGTTGGCTTGTGTCCGCGGCAATCAGTGTGTCC
AGCCGTCTCCAGCTTTTGGTTCGTCATATTTTTGAGCACACTGTTTTTTA
GGTGGTATGCAGTCAGTCAGGTGCGGTACATACATACAGACATCACATTC
TGTTTGTGCTGTCATTTCGCACAAACAAACTCCGTTTTCTTTTCTGCTCT
CTGTCTGTCTGTCTGTCTGTCTGTCTGTCTCTTTCTTTCAGACTGACCGT
CGACGTCTACCAAACACATGGACGGATATCCCTGGAAAGCGGGGACATGG
ACGAGTACAATCAGTGCCAGTCGCGGCTTAGAGAGCTTCACCTCGCTGGG
GTGGTCGGTGTGCGGATGGATGAGTTCACGGGGTATCGGCTAGTTTATTC
TCTCTACCGAGAAAATCACAGGTGTGTATGGGTAGCGGGGGGAGGGGGGG
GGTACTCATGTTTTACATGGCGCAGTTATGGGAACGTCGACCACGCGTTC
TCGGGGAGACGGACCTTGGTTCCTATCAGAGCGATTTCCGATGGTCAATC
GCTCCTTCCTACGTTGCCAAATGCGGCTCAACATTTTTCACCTACTTAAC
CTACCTCAACCATTGCGTATTCGGGGGGGGCGGGTGGCCCGGGGGGGGGG
GCGGACGGATACTTTTTGATCTTTGGTGTCGATAAGGCGGCCGTAAGACT
TGCAATTTGTGTGGGGCCTTGTTGGTTCTTTGTTGAGTCAATATTTTATG
TGTTAGGGTTAGGGTTTAGTTGAGTGCTGACAAGCATACGGTATGGTATG
GACAGTAATATATACAATACCCACGGGTCAAACTCTTCTGTGTGTTTCTT
CCGCTGTTTCGCCGAATGTTCGTCAATTTCACTCAAAACGTTTAGGATCG
GTAGATATTGACATGAGAAACAGGTCGTTCATGGGAAATATGTTCCAATT
TTGTTTTATCGAAACAGTACGGGAGAAAAGCCTGATTTTGGCGGGAAGGG
AGAGGGGTGCTGTTCACCGGATTTTGGTCGAAAACACGATTGTTTGAGCT
TAGCGCCATGAATTTCTTGAAAATTTGACAACTAAAGCCCTTATCTGTTG
TATAAGCTGAAACGTTCCTGATGTTCCCTGGGGTTCCTGAACCCCAGCCC
CCTACACAACAATTAGTGGTTTTTATTCAGATTATCGGAACAGATTTTCT
TTCTGCTCCCGATCTCCTGGTGATGACCAGTTTATTCATCGACGACAGGA
CGAAAACCCAAATATGCGCGTGCTCCACACTACTAAGTGGTACCAGGTAC
ATCCCAAGACTTGGACCTAATGCCCCAGACCAGGTGGTGTCCCCTCGAGA
GTAAGTCTCTTCCTGGGAACAACAACTGTCGTGTTCTCGCTTCCCTTTGG
CTGATGAATCTCCTTTTGTGTCTGTCTTCTGGGGCAGGGAGGTGAACGCG
ACGATGATGGCCTTGTCTCCCGAGCAGCGGAAGGGGGAAGGGGTAATGCA
CGCGTTAAAGGTGGTGAAGGCATACCACATGGGAGACTACTGTCGCTTTT
TTGGACTCTACCTCGCTGCTCCCAACATGACTTCGTGAGTTGTTATGGAT
GGATGCACCATCTCTACGCGTGCTGCGGTGGGAGGAAGGGTCGGTGGCAA
CACTTACTGTGAAGGCAAACCTGCTGTATTTATTGTAAGGACACATCGAA
AAAAGTGTACTAAATACATCCCTGTTACATATTAGTAGTACACTGACGGG
ATGGTGATGATTTCAAAATCAAAAAGGAAAGGCAAAGGCATGATGACACC
ATGCAGTTGTTCATGTCGTATATAATCATAATTATTGCAAGATATAAAGC
TAAATAACCTTGCAGCTCCCGTCGTCTAACTGGTTCTACAGTTTTTGGGG
TCATTTTACACGTACCTGGACGTACAGTATTCGGTGTGTGGTGGTGATAA
TGATATATGACAATGATGCGATGACGACGATGATGACGATGGTGATGGTG
ATGGTGATGACTGTCATGAAAAGGGGTCTGCGTTTCCACAATCTATAGGC
GTCGAGAGGAATGATATGAGGTTAGATGCGTCATTTGGCGTTTAGCTTCG
ACTTGCCTACTAGTGATATGTTGTTTGGTCCGGTAGACGTTTTCCCCCCA
TTTTGTCGAATGCATTGGTTGAGGGATACAGACTCAGCATACTACGATGG
CAGGTGACATCACGCCCACGTCACGCCCTAGAGGGCCTACCCCCCTTTTC
TAACAAGAACGAATCTTTGCTGTTCATCTCCGAAAATTCGAAAATTTCGA
TGAGAAGGGGGGAAGAGAAGGAAATCAACCAACATTAGTAGTCGCCCCAA
GATGACAAAAAAATCTTATTTCTAGTCGAAGATGTCGAGGACGCGTGGTG
AATGATGGATTTGACGGCTGAGGCATGCAAATCATGAGACTTGATTTTTC
TGCTACATCAATATATATATATATATATATAGAAAGAGAGAGAAAGATGA
ATTTGCTTTTTGCGGGTGTATGATGACGTGTGTTGTATTTTTTTGCGCAC
CGCAGTTCGTGATCGTTGCCTTTTGTCACAACGTAATGTATGCGATCGCT
CCCTCTTAACTCCTACCAACAGTTACATGATGGACTTCCTGGTGATGAGG
ATGCGAAAACATGCTTTCAGGGCGATGGTGAAGGCGTTCCTCCCCACCAT
ACCGTTAGCATACCTTCAGGTACGTTTCGCCATCAGTCATCCAGAACGAG
AATGGAAACCCTTTTGCGCTTACCTGTTACTAGTACACTGACCTCATCAG
GAGGCGCCAATTTGCCCTCACTACTAGATACGGGCATTGTGACATGTAAT
TGTTAACTTCTCTCCATGCCGTAACCACTGCCCAACGCGTTGTGCTGCCT
TTCCTTGATGCTGGAGTCATGCAACGATAAAGGTTGAGTGGAAATGAGCA
AATCGCTAGATATGCCGCTCATGTAGCATCCCTTCATGAGATTTTGATTA
CTTCACTTTCTGGGAATACGTCGCCATTGGCTGGTCACACATTGGTGTAT
AGGGAAAATACGATAATGTCCCAGTGTGGGGGACAAAATTCTGTTTCCCC
CGTTTCGGACAAATATACCATATCCCCCCCTCTTCTATCATCGAGCAGAG
TTGAACTCAATTCAAAAGGGTAGAAGACCCACTTCGTGGGATACCGTAGT
AGACGAAGAGTTGATAAGAAATGGGAGCTGCTGAAGAGGAGACGATGGAG
TAAGTACATGGGCGAATTTAAGGAGGAAATAACGGGTGCAATTTCAGTCA
GGGAAGAACAAGGGCTGAGAAGAGAAGCGTCAAGCAAGGAAGGTATGGTA
TGGATATATACCGAAGACTGGATGAATGGATAGGGTTGAAGGGTATGTAC
TTATGTGTGTTATTTTTGTCGTCGCTCAACACACAGGATCAGCTGCAGTT
CCACCAGGAGAAGCTTTTGCTGGAATTTTTGGAGCGAGACGTCTGTGCCA
CCCTCGTAAAGCCCACGGCGGGAGGAGAGCCGGCGGTAGATGTCAAGGCC
ACTCGGGCGGCGTGGGCACAGCAGGGGATGTGGTCTTGAGCTGCAAAGAG
GAAGAGGAGGGGGGTACTAGTGATGACGCATGCTGCGTCATACACACTGT
TGTCCGTTTTCCACCTCTACCTCTGCTGCAGTTTTTTACCGATGCTTCCT
GTACAACAGACCCTTGAGCAGCATAAAAGGATGATGGGATAATGAATGAT
GATTCGAAGTGTGTTATTCATAGCGATCACGGACCTACGCCCGAATGGGT
AGGGTAGCTCGTGTACTGAGCATGACTGGAAGTCTAGTCAAGGACCTT
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Coding sequence (CDS) from alignment at H-paniculata_contig16905:2..4499-

>mRNA_H-paniculata_contig16905.3871.1 ID=mRNA_H-paniculata_contig16905.3871.1|Name=mRNA_H-paniculata_contig16905.3871.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig16905:2..4499- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGAGTACAATCAGTGCCAGTCGCGGCTTAGAGAGCTTCACCTCGC
TGGGGTGGTCGGTGTGCGGATGGATGAGTTCACGGGGTATCGGCTAGTTT
ATTCTCTCTACCGAGAAAATCACAGATGGACGAGTACAATCAGTGCCAGT
CGCGGCTTAGAGAGCTTCACCTCGCTGGGGTGGTCGGTGTGCGGATGGAT
GAGTTCACGGGGTATCGGCTAGTTTATTCTCTCTACCGAGAAAATCACAG
GGAGGTGAACGCGACGATGATGGCCTTGTCTCCCGAGCAGCGGAAGGGGG
AAGGGGTAATGCACGCGTTAAAGGTGGTGAAGGCATACCACATGGGAGAC
TACTGTCGCTTTTTTGGACTCTACCTCGCTGCTCCCAACATGACTTCGGA
GGTGAACGCGACGATGATGGCCTTGTCTCCCGAGCAGCGGAAGGGGGAAG
GGGTAATGCACGCGTTAAAGGTGGTGAAGGCATACCACATGGGAGACTAC
TGTCGCTTTTTTGGACTCTACCTCGCTGCTCCCAACATGACTTCTTACAT
GATGGACTTCCTGGTGATGAGGATGCGAAAACATGCTTTCAGGGCGATGG
TGAAGGCGTTCCTCCCCACCATACCGTTAGCATACCTTCAGTTACATGAT
GGACTTCCTGGTGATGAGGATGCGAAAACATGCTTTCAGGGCGATGGTGA
AGGCGTTCCTCCCCACCATACCGTTAGCATACCTTCAGGATCAGCTGCAG
TTCCACCAGGAGAAGCTTTTGCTGGAATTTTTGGAGCGAGACGTCTGTGC
CACCCTCGTAAAGCCCACGGCGGGAGGAGAGCCGGCGGTAGATGTCAAGG
CCACTCGGGCGGCGTGGGCACAGCAGGGGATGTGGTCTTGAGATCAGCTG
CAGTTCCACCAGGAGAAGCTTTTGCTGGAATTTTTGGAGCGAGACGTCTG
TGCCACCCTCGTAAAGCCCACGGCGGGAGGAGAGCCGGCGGTAGATGTCA
AGGCCACTCGGGCGGCGTGGGCACAGCAGGGGATGTGGTCTTGA
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