mRNA_H-paniculata_contig10591.387.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig10591.387.1
Unique Name	mRNA_H-paniculata_contig10591.387.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig10591.387.1 vs. uniprot
Match: D7FUH7_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH7_ECTSI)

HSP 1 Score: 361 bits (926), Expect = 1.360e-122
Identity = 180/244 (73.77%), Postives = 203/244 (83.20%), Query Frame = 1

Query:   97 CTSEDISEVCGTADCGMIRDYRNPTVRLPESVAVGENLNPTDGNAIETICYSVLLNGPLRDLYARASAVGSNAVYFGAWTGVFRYFPGFAQDECGSYDPRIRPWYVAASSGPKDVVIVVDVSGSMGQHNRLELAKDAAVTVINTLGSDSYVNVVVFSEEARVLSPNSTALVNADAEHVSELVNLVNDLEIDLANVATNFGSAFETTFNLLDASRATTGLSSGCQTAIVFLTDGQRTVGATADEV 828
            CT  +I E+C   DCGMIRDY NPTVRLPESVA GENLNPTD + IET+CYSVLLN PLRDLY  AS VGSNAVYFGAWTGVFRYFPG AQ+ CG+YDPRIRPWYVAASSGPKDVVIV+DVSGSM Q+ RL+LAK+AA TVINTLG+DS+VNVV FSE ARVL  NST LV A  +++ ELV+LV +LE DLANV TNFG+AFETTF++L+ASR +   SS CQTAIVFLTDG   VG + DEV
Sbjct:    2 CTQYEILEICAEEDCGMIRDYDNPTVRLPESVADGENLNPTDEDVIETMCYSVLLNTPLRDLYEEASQVGSNAVYFGAWTGVFRYFPGIAQESCGTYDPRIRPWYVAASSGPKDVVIVLDVSGSMSQYGRLDLAKEAAETVINTLGADSFVNVVTFSETARVLLTNSTTLVRATEDNLGELVSLVQNLEFDLANVGTNFGAAFETTFDILEASRTSEETSSNCQTAIVFLTDGNTNVGLSTDEV 245

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BLAST of mRNA_H-paniculata_contig10591.387.1 vs. uniprot
Match: A0A7S2LVH6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LVH6_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.050e-55
Identity = 117/289 (40.48%), Postives = 165/289 (57.09%), Query Frame = 1

Query:    1 VLDAYNQRCLV-TQGECANLHLDACRSRLPSGECTSED--ISEVCGTAD---CGMIRDYRNPTVRLPESVAVGENLNPTDGNAIETICYSVLLNGPLRDLYARASA------VGSNAVYFGAWTGVFRYFPGFAQDECGSYDPRIRPWYVAASSGPKDVVIVVDVSGSMGQHNRLELAKDAAVTVINTLGSDSYVNVVVFSEEARVLSPNSTALVNADAEHVSELVNLVNDLEIDLANVATNFGSAFETTFNLLDASRATTGLSSGCQTAIVFLTDGQRTVGATADEVM 831
            V +AY QRC + T  +C+    + C S  P+ +C + D  + E CG      C  + D     V +P ++A G++ NPTD   IET CY++L    +R  Y           V  +  YFGA  G+FR  PG   +ECG+YDPR+RPW+VAASSGPKDVV+V+DVSGSM  + R++LAK+AA+TVI TL     V V+ FS+ A  + P    LV A  E+ + L++ +  L       ATNF + F+  F+ L+ +      +SGC  AI+F+TDG RT G   DEV+
Sbjct:  105 VENAYTQRCSIETLSQCSRGSFNGCSSVFPNQQCMAADELVVEACGGGSGGGCNALWDKTTSIVSIPSALAQGKDDNPTDPELIETACYTLLAEDYMRTKYENDEIFWDSYNVQPSWTYFGAHNGLFRKLPGTVDEECGNYDPRLRPWFVAASSGPKDVVLVLDVSGSMSDYGRMDLAKEAAITVIKTLTISDRVAVIAFSDYAYQVLPEDL-LVRATNENKNRLIDSIQQLT---DGGATNFHAGFQQAFDALERT-IEQEYTSGCNVAILFMTDGVRTAGPETDEVL 388

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BLAST of mRNA_H-paniculata_contig10591.387.1 vs. uniprot
Match: K0TQX2_THAOC (VWFA domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TQX2_THAOC)

HSP 1 Score: 180 bits (456), Expect = 2.140e-48
Identity = 115/286 (40.21%), Postives = 159/286 (55.59%), Query Frame = 1

Query:   10 AYNQRC-LVTQGECANLHLDACRSRLPSGECTSEDISEV--CGT-ADCGMIRDYRNPTVRLPESVAVGENLNPTDGNAIETICYSVLLNGPLRDLYARASA----VGSNAV--YFGAWTGVFRYFPGFAQDECGSYDPRIRPWYVAASSGPKDVVIVVDVSGSMGQHNRLELAKDAAVTVINTLGSDSYVNVVVFSEEARVLSPNSTALVNADAEHVSELVNLVNDLEIDLANVATNFGSAFETTFNLLDASRATTGLSSGCQTAIVFLTDGQRTVGATADEVMYV 837
            AY++RC   T   C+   L +C S   +G+CT+E+   +  C   A C  + D ++  V LP  +         D   IETICYS+L    + + + R +      GS     YFGA  G+FR  P   Q+ CG YDPR RPWYVAASSGPKDV++V+DVSGSMG H RL LAK+AA TVI TL       ++ FS EAR +   S  L+ A  ++   LV+ + +L    A  +TNFG      F+ L+ +     ++SGC  AI+FLTDG+ T G   DEV+++
Sbjct:   50 AYSRRCETATLHGCSRASLSSCSSSFSNGQCTTEEELSIPACDEGAYCSSLWDAQSSAVSLPSFL-------DQDPEVIETICYSLLAEPFMVESFERDTEWHARYGSYPSWRYFGAHDGIFRKIPAHHQEVCGEYDPRKRPWYVAASSGPKDVILVIDVSGSMGNHGRLSLAKEAATTVIETLTVADRFAIIPFSHEARFIGGPSETLLRATKDNKDRLVSEIENL---YAEGSTNFGDGLFRAFSALE-NTIQQEVTSGCNAAILFLTDGESTSGMVDDEVIHM 324

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BLAST of mRNA_H-paniculata_contig10591.387.1 vs. uniprot
Match: A0A7S4NES1_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NES1_9STRA)

HSP 1 Score: 164 bits (416), Expect = 8.410e-43
Identity = 105/280 (37.50%), Postives = 149/280 (53.21%), Query Frame = 1

Query:   46 CANLHLDACRSRLPSGECTSEDISEVCGTAD-----CGMIRDYRNPTVRLPESVAVGENLNPTDGNAIETICYSVLLNGPLRD----------LYARASAVGSNAVYFGAWTGVFRYFPGFAQDECGSYDPRIRPWYVAASSGPKDVVIVVDVSGSMG--QHNRLELAKDAAVTVINTLGSDSYVNVVVFSEEARVLSPNSTALVNADAEHVSELVNLVNDLEIDLANVATNFGSAFETTFNLLDASRATTGLSSGCQTAIVFLTDGQRT--VGATADEV 828
            C     D C S  P   C +++   +   A+     CG + DY   TVR+P+ +A G N NPTD   +ET+CYS     PL D           Y     V    +YFG+  G FR FPG    ECG+YDPR+RPWY+A SSGPK+VV+VVD SGSMG     +++L ++AA  ++ TL     +++V F+ +A     N   +  A  E+  +L++ +  LE   AN  TNF  AF+  F+ LD +     ++  C +AI+FLTDG  T  +G T D V
Sbjct:   67 CKAASYDMCSSEYPFQTCRADEQLTIPACAEGSAGKCGGLFDYTTSTVRIPKDLADGMNGNPTDKTVVETVCYS----RPLTDWMVGKYETDKTYWERLGVKEPQMYFGSHDGAFRIFPGRHSPECGTYDPRLRPWYIAGSSGPKNVVLVVDTSGSMGGGTGRKIKLLREAATLIVKTLTVADRISIVEFNTDAHSFPQNGMYV--ATEENKQKLIDGIGKLE---ANGQTNFYEAFDKAFDSLDQTARNEQVNR-CNSAILFLTDGLMTPHLGGTEDNV 336

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BLAST of mRNA_H-paniculata_contig10591.387.1 vs. uniprot
Match: A0A7R9U062_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9U062_9VIRI)

HSP 1 Score: 160 bits (404), Expect = 4.180e-41
Identity = 103/276 (37.32%), Postives = 156/276 (56.52%), Query Frame = 1

Query:   13 YNQRCLVTQGECANLHLDAC-RSRLPSGECTSEDIS-EVCGTADCGMIRDYRNPTVRLPES-VAVGENLNPTDGNAIETICYSVLLNGPLRDLYARASAVGSNAV-------YFGAWTGVFRYFPGFAQDECGSYDPRIRPWYVAASSGPKDVVIVVDVSGSMGQHNRLELAKDAAVTVINTLGSDSYVNVVVFSEEARVLSPNS--TALVNADAEHVSELVNLVNDLEIDLANVATNFGSAFETTFNLLDASRATTGLSSGCQTAIVFLTDGQRT 804
            Y +RC ++   C     + C  S     EC+++ I    CG+  CG + D+    VR+P++ ++ G   +P   +  ET+CY+   N     +  +A  V + +V       YFGA  G+FR++P      CG YDPR+RPW+ AASSGPKDVV+V+D+SGSM   NR  LAK AA+ V+N+L    +  VV+FS +A++LS +S  + +  A  E+V    N ++ LE      +TNF +AF   F++LD S      +S C TA++FLTDG+ T
Sbjct:   32 YARRCALSANSCKEAAYEGCVTSYTDQAECSADYIKIGECGS--CGAVFDFTTSNVRIPKAYMSNGPGSSPDTPSLKETVCYT---NAITDFMVRQAEEVKAGSVFQEIPQTYFGAHNGLFRFYPARQTGVCGGYDPRVRPWFTAASSGPKDVVLVLDISGSMHFQNRWSLAKQAAIAVLNSLSIADHFGVVLFSTDAKMLSGSSRRSRMQLATEENVK---NAIDALERVTVGGSTNFLAAFRLAFDVLDHSVEQES-TSRCHTAVLFLTDGEMT 298

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BLAST of mRNA_H-paniculata_contig10591.387.1 vs. uniprot
Match: A0A1Z5KJR5_FISSO (Voltage-dependent calcium channel alpha-2/delta-4 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJR5_FISSO)

HSP 1 Score: 157 bits (396), Expect = 1.850e-40
Identity = 106/274 (38.69%), Postives = 150/274 (54.74%), Query Frame = 1

Query:   43 ECANLHLDACRSRLPSGECTSEDISEV--CGTAD-CGMIRDYRNPTVRLPESVAVGENLNPTDGNAIETICYSVLLNGPLRDLYARASA------VGSNAVYFGAWTGVFRYFPGFAQDECGSYDPRIRPWYVAASSGPKDVVIVVDVSGSMGQHNRLELAKDAAVTVINTLGSDSYVNVVVFSEEARVLSPNSTALVNADAEHVSELVNLVNDLEIDLANVATNFGSAFETTFNLLDASRATTGLSSGCQTAIVFLTDGQRT--VGATADEVM 831
            EC + + D C + LPS  C S     +  CG+ + C    D+      +    A       TD    ETIC++  +N  L     R  A      +   A+YFG+ TGVFRY+PG    +CG+YDPR RPW VA SSGPK++V+V+D SGSM + NR+ L K AA+ VI TL     + +VVF E ARV++     L  A+ E  + L++ + +LE   A   TNF  AFE  F++LD S+    L+  C +A++FLTDG+ T  VG T + V+
Sbjct:   10 ECQSSNYDECFAALPSPTCPSGPEFNIPSCGSGEGCPGYVDFTTSVYSIAPGTA------ETDPLVYETICWTRHMNEWLIQRNERDRAFWEDLGINPGAMYFGSTTGVFRYYPGRRTKDCGTYDPRPRPWNVAPSSGPKNIVLVLDKSGSM-KENRMTLMKKAAIRVIETLTMSDRIAIVVFDETARVIADEGMYLYPANNESKAILIDAIANLE---AKGETNFYDAFEKAFDVLDISKGEE-LTVNCNSALLFLTDGEMTHPVGITPETVI 272

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BLAST of mRNA_H-paniculata_contig10591.387.1 vs. uniprot
Match: B7G9V1_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G9V1_PHATC)

HSP 1 Score: 150 bits (380), Expect = 3.890e-38
Identity = 101/274 (36.86%), Postives = 146/274 (53.28%), Query Frame = 1

Query:   13 YNQRCL-VTQGECANLHLDACRSRLPSGECTS-EDISEV-CGTA-DCGMIRDYRNPTVRLPESVAVGENLNPTDGNAIETICYSVLLNGPL------RDLYARASAVGSNAVYFGAWTGVFRYFPGFAQDECGSYDPRIRPWYVAASSGPKDVVIVVDVSGSMGQHNRLELAKDAAVTVINTLGSDSYVNVVVFSEEARVLSPNSTALVNADAEHVSELVNLVNDLEIDLANVATNFGSAFETTFNLLDASRATTGLSSGCQTAIVFLTDGQRT 804
            Y +RC  ++  +CA    + C S  P+  C   ED++   CG    C  + DY     RL +++    + NP+D N IETIC++  L+         +  Y  +  + +  +YFG+  G FR +P    + CG YDPR+RPWY+AASSGPK+VV+V+D SGSM   NRL L K AA  VI TL     V +V FS +A++ + ++  L  A  ++   L   ++      A  ATNF  AF   F +L+ S        GC TAI+FLTDG+ T
Sbjct:   49 YQKRCNEISLRQCARGSYNECTSLYPNQTCPGGEDLNVAQCGDGVSCSGLWDYSISNTRLHQNLVDSADGNPSDPNVIETICFTQQLDEFFVQKRAEQKPYWDSLGLRTPQMYFGSQNGAFRIYPARQSETCGVYDPRLRPWYIAASSGPKNVVLVLDTSGSMTDGNRLSLLKQAAKQVIETLTVGDRVAIVEFSSQAKLFAQDNKFLFTATQKNKELLATHIDSFT---AAGATNFLDAFTAAFAVLNDS-IDQEYHVGCTTAILFLTDGEMT 318

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BLAST of mRNA_H-paniculata_contig10591.387.1 vs. uniprot
Match: A0A1Z5KTH0_FISSO (VWFA domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KTH0_FISSO)

HSP 1 Score: 144 bits (362), Expect = 1.810e-36
Identity = 96/263 (36.50%), Postives = 139/263 (52.85%), Query Frame = 1

Query:   43 ECANLHLDACRSRLPSGECTSEDISEV--CGTAD-CGMIRDYRNPTVRLPESVAVGENLNPTDGNAIETICYSVLLNGPLRDLYARASA------VGSNAVYFGAWTGVFRYFPGFAQDECGSYDPRIRPWYVAASSGPKDVVIVVDVSGSMGQHNRLELAKDAAVTVINTLGSDSYVNVVVFSEEARVLSPNSTALVNADAEHVSELVNLVNDLEIDLANVATNFGSAFETTFNLLDASRATTGLSSGCQTAIVFLTDGQRT 804
            EC   + D C + LP+  C S     +  CG+ + C    D+      +    A  + L        ETIC++  ++  L     R  A      +   A+YFG+ TGVFRY+PG     CG+YDPR RPW VA SSGPK+++++ D SGSM + NR+ L K AA+ VI TL     + +VV+ E A V++     L  A+ E  + L++ + +LE   A   TNF  AFE  F++LD S     L+  C +AI+FLTDG+ T
Sbjct:   56 ECQFANFDECFAALPNPTCPSGPEFNIPSCGSGEGCPGYVDFTTSVYSIAPGTAESDPL------VYETICWTRHMDEWLIQRNERDRAFWEELGINPGAIYFGSTTGVFRYYPGRRTKNCGAYDPRPRPWGVAPSSGPKNILLLFDKSGSM-EGNRMNLMKKAAIRVIETLTMSDRIAIVVYDETASVIAKEGMYLYPANNESKAVLIDAITNLE---AQGETNFYDAFEKAFDVLDKSHGEE-LTVNCNSAILFLTDGEMT 307

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BLAST of mRNA_H-paniculata_contig10591.387.1 vs. uniprot
Match: A0A6S8CFS5_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8CFS5_9STRA)

HSP 1 Score: 144 bits (364), Expect = 5.770e-36
Identity = 103/282 (36.52%), Postives = 149/282 (52.84%), Query Frame = 1

Query:    4 LDAYNQRCLVTQGECANLHLDACRSRLPSGECTSEDISEVCGTADCGMIRDYRNPTVRLPESVAVGENLNPTDGNAI--ETICYSVLLNGPLRDLYARASAVGSNAV----YFGAWTGVFRYFPGFAQDECGSYDPRIRPWYVAASSGPKDVVIVVDVSGSMGQHNRLELAKDAAVTVINTLGSDSYVNVVVFSEEARVLSPNSTALVNADAEHVSELVNLVNDLEIDLANVATNFGSAFETTFNLLDASRATTGLSSGCQTAIVFLTDGQRTVGATADEVM 831
            L  Y  RC +T   C    +  C S+L S   +  D    C T+D G     +  +     +VA G    P  GN +  E   +       L D +  AS   SNA+    Y G   G+FR +PG   + CG+YDPR+RPWY+AA+SGPKDVV+V+DVSGSM  + RL L K+AA +V+++L     V +V FSE+A  +   +   + A+  +   L + +  L   +A  ATNF +A +TTF++   S      S+ C  AI+FLTDGQ T GAT + ++
Sbjct:    4 LQKYKARCSLT---CPKCFMIGCESKLTS---SVSDDKTTC-TSDYGGESSCKRQSDSRKLNVAQGAIRTPP-GNTLSDERAAHDACWTNDLDDAFISAS---SNALLRWRYIGLVDGLFRSYPGVPDESCGTYDPRLRPWYIAATSGPKDVVLVLDVSGSMTSNQRLMLVKEAAKSVLDSLSVFDRVGIVKFSEDATRIGDINQRFLVANTANKEYLKSQIEGL---VAGGATNFQAALQTTFDMFQDS-VDNEQSTNCHRAILFLTDGQPTQGATGNTLL 270

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BLAST of mRNA_H-paniculata_contig10591.387.1 vs. uniprot
Match: A0A6B2L926_9EUKA (VWFA domain-containing protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L926_9EUKA)

HSP 1 Score: 138 bits (347), Expect = 3.600e-35
Identity = 76/171 (44.44%), Postives = 102/171 (59.65%), Query Frame = 1

Query:  319 YFGAWTGVFRYFPGFAQDECGSYDPRIRPWYVAASSGPKDVVIVVDVSGSMGQHNRLELAKDAAVTVINTLGSDSYVNVVVFSEEARVLSPNSTALVNADAEHVSELVNLVNDLEIDLANVATNFGSAFETTFNLLDASRATTGLSSGCQTAIVFLTDGQRTVGATADEVM 831
            Y G   G FR +PG  +  C  YDPR RPWY+AASSGPKDVV++VDVSGSM   NRL LAK AA TV+ TL  + YV +V FS    V+      L+ A   ++  L   V+ L I+     TNF  AF + F +L  S+A   ++SGC++ I+FLTDG+   G   + ++
Sbjct:   37 YLGTPQGFFRSYPGSDRPSCTDYDPRTRPWYIAASSGPKDVVLIVDVSGSMADFNRLSLAKSAATTVLRTLTINDYVGIVKFSTGPGVVGSPRGLLLPATQANIDSLSGAVDGLSIE---GGTNFEDAFRSAFGMLSGSKAQE-MTSGCESLILFLTDGEANAGLVGEALL 203

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig10591.387.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig10591.387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FUH7_ECTSI	1.360e-122	73.77	VWFA domain-containing protein n=1 Tax=Ectocarpus ...	[more]
A0A7S2LVH6_9STRA	1.050e-55	40.48	Hypothetical protein (Fragment) n=2 Tax=Skeletonem...	[more]
K0TQX2_THAOC	2.140e-48	40.21	VWFA domain-containing protein n=1 Tax=Thalassiosi...	[more]
A0A7S4NES1_9STRA	8.410e-43	37.50	Hypothetical protein n=2 Tax=Odontella aurita TaxI...	[more]
A0A7R9U062_9VIRI	4.180e-41	37.32	Hypothetical protein n=1 Tax=Prasinoderma colonial...	[more]
A0A1Z5KJR5_FISSO	1.850e-40	38.69	Voltage-dependent calcium channel alpha-2/delta-4 ...	[more]
B7G9V1_PHATC	3.890e-38	36.86	Predicted protein (Fragment) n=1 Tax=Phaeodactylum...	[more]
A0A1Z5KTH0_FISSO	1.810e-36	36.50	VWFA domain-containing protein n=1 Tax=Fistulifera...	[more]
A0A6S8CFS5_9STRA	5.770e-36	36.52	Hypothetical protein n=2 Tax=Aplanochytrium stocch...	[more]
A0A6B2L926_9EUKA	3.600e-35	44.44	VWFA domain-containing protein (Fragment) n=1 Tax=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig10591	contig	H-paniculata_contig10591:763..8248 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	365.5
Seed ortholog evalue	2.2e-98
Seed eggNOG ortholog	2880.D7FUH7
KEGG ko	ko:K04860
KEGG TC	8.A.18.3
KEGG Pathway	ko04010,ko04260,ko04261,ko04921,ko05410,ko05412,ko05414,map04010,map04260,map04261,map04921,map05410,map05412,map05414
Hectar predicted targeting category	other localisation
EggNOG free text desc.	voltage-gated calcium channel activity
EggNOG OGs	KOG2353@1,KOG2353@2759
Ec32 ortholog description	Von Willebrand factor type A domain protein
Ec32 ortholog	Ec-21_003770.1
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko04040
Exons	9
Model size	840
Cds size	840
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig10591.387.1	prot_H-paniculata_contig10591.387.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig10591 763..8248 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig10591:763..8248-
coding sequence from alignment at H-paniculata_contig10591:763..8248-

protein sequence of mRNA_H-paniculata_contig10591.387.1

>prot_H-paniculata_contig10591.387.1 ID=prot_H-paniculata_contig10591.387.1|Name=mRNA_H-paniculata_contig10591.387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=280bp
VLDAYNQRCLVTQGECANLHLDACRSRLPSGECTSEDISEVCGTADCGMI
RDYRNPTVRLPESVAVGENLNPTDGNAIETICYSVLLNGPLRDLYARASA
VGSNAVYFGAWTGVFRYFPGFAQDECGSYDPRIRPWYVAASSGPKDVVIV
VDVSGSMGQHNRLELAKDAAVTVINTLGSDSYVNVVVFSEEARVLSPNST
ALVNADAEHVSELVNLVNDLEIDLANVATNFGSAFETTFNLLDASRATTG
LSSGCQTAIVFLTDGQRTVGATADEVMYV*

mRNA from alignment at H-paniculata_contig10591:763..8248-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig10591.387.1 ID=mRNA_H-paniculata_contig10591.387.1|Name=mRNA_H-paniculata_contig10591.387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7486bp|location=Sequence derived from alignment at H-paniculata_contig10591:763..8248- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTTGGACGCATACAACCAACGTTGTTTGGTGACCCAGGGAGAGTGCGC
CAACCTTCACCTGGATGCATGTCGGTCCCGTCTACCTTCTGGAGAGTGCA
CTTCAGAGGATATTTCGGAAGTCTGCGGGACAGCGGTTAGTTGTTTTCGG
TATTTTGTTCATCAGCAAGAGCGTATCTAGTCTGTTCTTCGTATTTGCTA
ATCGACGTTTTGTTGTTGAATATTGGTATTTAGAAAATCCCCCTTCCTTT
TCTAAATACTCTAGAGCCCTCATACAGCGATTTCATCTTGCCTAGTCTGG
TAGAGGGGGAGAACGGTGGGGCTAAGGCAGGGTGGGCGTGGGGGGGATAG
AGATAAAGAAATCAGGTATATCGATGAATAGACGGATGGGCCAAACAAAA
GGGGCGTGTTGCTTTTCTGTTTTCCCGAAAAGAAGGAAGACGAGGCGTAA
ACCGGACTAAGACTGTGAGACATGCCAGACTATGTTCCGTCGAATGTTAT
GTTTGAGTTTTTGCCTTTGGTTTAGTGGCCTTTAAGCGGGTTGTAGAGTC
TCGTCAATGGCATTTCTGTTCGTGCGGGGAGCAGCTGTTTTTTTAAATGC
TCCCATAAATAAGCCAAAACTAAATCAATATCGTGGAAGAACTGGCTGCA
AATATGAAGCACATCTGTAGCACATAAAAACGTTAAGAAACGCTGCAACA
GGTTGCGTCTGGCTCGTGCAGCGTTTTCTTATAAGCTGATTTCGCAGTTC
GGTTTGCAGCCGATCTACTACTGTGTATCTATTCGTGTTTTTGATCGAGA
AAAATCACAAGGCATTTTTTTTTTTTTTTCATTTGTTTTTCAGTCATTTT
TTTTAATATATACAAAAATTCATTGTATTGTACAATATAAAACAGTCCGA
TTTTTTTTTTTTTCTCATGTCCTCTGCTTATGAACTAATTAGGATTGCGG
AATGATCCGAGATTACCGGAATCCCACGGTTCGCCTGCCGGAATCCGTGG
CGGTGGGCGAAAACCTCAACCCTACCGACGGAAACGCGATCGAAACGGTG
AGCTTAGCTTTCGGTTAGTAGTTCTTGGTCTCCGACGAAGAGACTAGTAT
GGTGGTATAGGTACAGCTGTGCGCGTGCTGTCTGTGTGTGTTGTTCTTTG
TGTTTTTGTGTGTAAAATCTACGTCAAGTAGGCAAAGCCTTTGCACCCAA
GACCCTATATAAAAGTATGTCAAACTCTCTTAACCCCTTCTTGGGGGGCT
AAATCAACCATTGTTGCTCTTTTTCGGAGGAGGGGCAAAATGACAACATA
TCAACCGGTGCTCTTCCCAGACAGGAAGAGAGATCATTCTCTCAATTTCC
CCCTCTACCTATTTTCCAGCGTATCCAACGTCTTGAGCTCTATATTGCAT
GGGAGAAAAATGACCTAAAAGCAGATATCAGTACATGGCTTCTTTTTTTT
TTTTTAGGGATCGTGAACTGCGTCACCCGGTATTTTTTGGTGTAGCAAAC
GCACCGTTCACTGCTCTTGTCAAGTCACTTAAGCATGTGGTATACATACG
TATTGCGTTCGTACGGGTATGGTGCTCTAGTCGTGGTGTGCACAAGGATG
CCTCTCATCGGTGATTACCTTAACATGACTGACTGGACTAGCTCTCCAAA
ACAAAACTTAATCGGGTCGTAGGCGTGGTATCGTGAAGAACCCCCCCCCC
CAAAAAAAAATACCCGTCCTGTGTCGATCCATACCTGCTATTTTCATTCG
GGGGATTCTGCGGCCATGAAATCGCGTCCGGACGGTTCAGTCCTTCCTAT
ATCTTTTACTCATCTCTATAGAGGCCATGGACACAGTTTTTTTTAGAGTG
TTTTTATTTTCAATTCGAGTGTACACAAAAGATCCTGATTTCCTCGATGT
GGGTACTCTTTACCGCCGGAGTTAAATGAACCATGCCTGTGAAGTTGAAA
GTGCACCTATATGTGAGCGTAAGAGAGCCACGACGAGCGAGCACAGCAAG
TACGCCTATGTTACCTAGAGCAAAAAATGAATATTGAATGTGTCCATATG
CGGGCATAAGCGAGTCACGGCGAGTGTAGCGAGAGTCCGTTTTGTTTGCA
AGGATTAGAGTTACGGTGACATCGTCTACATGCTAAATCCGCTGAGAATT
GACGTAGCCGTGGCGTGTCCACTATTAGTTTTGACAGTCAGCTCGGCAGG
CTCCAACGGTTTGCTCCCTATGTGTCCTCTCTCTATGCTATATATATCCC
TATCCCCTGTTCTCTTTGTTTTTCGTTATTGGGTGGTGTTGGGGGGGGGG
GGGGTGACGTCACGAACTCGGCGGCGATGATGATGATGGGGATGGGGTTG
ATGGTGATTACAGATTTGCTATTCGGTTTTGCTCAACGGTCCCCTGCGCG
ATCTCTACGCGAGGGCCAGTGCTGTGGGTTCCAACGCCGTGTGAGTGTCT
GCTGTGTCGTATGAGTGCTGTGGCAATTGTTGCCAAGTGTTTTTTCCTTT
GTTCGTTGGTCCTCTTTTTTTTTTTTTTTTTCCACCAAGCGATTTTTTTT
TCTTTTTCTTTTTCTGATTTTTGCCAAGAAAAAAAAAAACAAGAGTAAAC
GTATGGTTTTGGTATACGTCATTATTTTATCATGTGGATGATGTTTTGTT
CGGGTAGTATTTAGGCGCGGACGATATGTGTGAGAGTGTCATTACGCTTC
CCTTTCTCCATCCTTTTTTTTTTTTTTTCACGGATAATTATTTTGCGTTT
TGTGTGATTTTCGTTTGTTGGTTTTGTCCAAAGTCAATGTTTCTATTTTT
TATTTGTTACTGTTGGTCCACAGATACTTCGGAGCATGGACAGGCGTGTT
TCGATACTTCCCGGGGTTTGCACAAGACGAGTGCGGCAGCTGTAAGTGAT
GACATTTTTTTTTCTTTTGTTAGTATGCCTGCCCACTTGTAGTGGGTAGT
ATGTGTATCTGCATTTCTCACTTCGGATGGAGGTTGGTGATGGTCAAAGA
CGGTTAATAGTGGTTGTAACGAATTTTGGAAGATGACTATGACAACACAA
GAGTACTTGACCCATTTCAATACACGTTCCAATCAACAGCTCTAGGTCCT
CCTCCACCATGTTTGATTCTCTTAGAGTATGAGCGCACATTGCGGGACAT
TTGTCTACTTTCGAGGATGGAAGGTGGGGGAACGGTCGCAAGTTCCATTT
ATGGTGTTATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTATGTTCCTTGAGAAATGAAACCTTCATTCGAGCTGTGTAGTATT
TACAGTAGCTGTCAGTTATATGGCAAGGTTTTTCCTCAGGTCGGTTGGTT
GCCTCACTTTTTTCGTTGTATTGGTTTTTTCATTGGCTTGCTTTGTATGA
CTATGCCGTACCTCGCCTCAGTCCGGTCTCTCAGTCCCACGATCAAAGGC
AGCATGTTGCAGATGGACTCCACAACACACAACAGTGACGTTTGTTAAAA
AGCGCACCGAGGCACAAGAGGCCGCAGGCAGGCACCGTACGGCAATTCAC
TCGTTGCTGTTTTTGCTCGACGCTCCCTCCCTCCCATGTTGTATCATCGT
TACTTGGACGTTCATGAGCCATGGGTGGGTTACGTTAAGCTTTTGAAATA
TTGAGCCTCCATAACGCGAATATGGTGAAGGATGAGGATATACATACCGG
TGGTATCTCCCTCCCTTAACTACCGAGCGATTTGGTCATTATCTATTTAT
GAGAGATTCATATTCGTCCAATATATTGATGCTTAAAACATTTTTTTTTT
TTTAATGATTTTTTTCACCACTTGAATATAATATGCTTGTTATCAGATCG
TTTGCACAGAAGGTGACTGATCTGAGCACGTGCCCCCCCGCGGTTTCGCG
TGGAAGCCAACTTTAATCTATTCTATTTTGTCTTATTTTTAATTCCAAAA
CGTGTGTGTGTGTGTGTGTGTGTGTTTATGTGTGTTTGTGTTTCTGTGTG
TGTGTGTTCGTTTTTCGTCGTAATTATCAACTTTTTTTTCATGTGGCTCG
GTGGATATAGATGACCCCCGGATCCGGCCGTGGTATGTGGCGGCATCAAG
CGGACCCAAGGTGCAGTAGTCTCGATAGTAATGGAGTAATTTATACGTTG
TAGTATGAGCGAACGGCAGGTAATGGCATTCGGCTCTGTTCTGTTAAAGG
AAATGTAGACATGTTTGGGCGAATGCCTGGATATGGAAGCAGCGGAAAAG
GTTTTTACCTCAGCCTTCCGGGGGGTTAAAAAAAAAAAAATGACATTCGG
TTCACGTTTCATGCGAAGGTAGTCCTACCATGATGACAAGTTAGAGATTT
TAGATAGTAGCAGTAGCATGTTTTTGTTTTTGTTGTTGCTGTTGCTGTTG
CTGTTGCTGTTGTAGGCTCATTACGGAGTGACACACACGAAACTTGCAAC
ACGTGCTGTTGGTTTTATGTTCAGGACGTGGTGATCGTTGTGGACGTGTC
GGGGAGCATGGGGCAGCACAATCGACTGGAGTTGGCGAAAGATGCTGCCG
TAACGGTTATCAACACGCTGTAAGTTACTTACTGTGTCACATTATTTCTG
TTGGTATTCGAGAAACAGCCTCTCTCTTTCTCTCTTCCTATCTCTCTCTC
TCTCTTCCTATCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTTTCTCTC
TAACCTCTTGGATAAAGTGGAAGGATTCCTGAACACGATAAATACACTGT
TCATTAATACAGGGCATGCCTCTCTGTCTTTCTCTCTCTCTGTGTCTCTC
CGTTAAGTGCGGCGGGGAAAGAGTCGACTGACTAGTACCATCAAGTAAAT
AGGATTTGCGGCAAAATTGAGCTTTCCTAATGGGGGAACGGTTGAGGCGG
CTGAACCAGCCAGACGAAGTGTGTGTTACGACGCTACCGGTACAGCCATG
AGGGCGCGGGTTTATATGGAATCTTCACTTGCAGAAGAAGCATATTGTTC
CAGTACTCGAGAGTAATGATAATAATTGAACGATGGATATGAACCGTACA
TGGATCATGACCAAGTCGCGGCTGATAAGGGGTTAGCGGTGCCATGTGGT
TGTCGATTCGCTCTTCATGAAGAAAACCACACATGAGCACAGTAAGTCCA
TCTTCCTTCCTTCCTTCCTATTTTGCTTTTTGCGGTCACCCGTCCATCGC
TTTCCTCCTAAAAACGTCGCAGCTGCTTGTAACGGTAACGAACTGTTGAT
ATAAAGGAGATGCAATGATGCTGTTGGAACGATTAGACGATTTTTGGTGT
TCTATCGGTTTTTTTTTTTTTTTTTTGTCCCTGTCTGTCGGTGTTTTGTT
GCTCAGAGGTTCCGACTCGTACGTGAATGTAGTGGTGTTTTCTGAGGAAG
CTAGGGTGCTGTCGCCCAACTCTACTGCTCTCGTAAACGCGGACGCAGAG
CACGTGTCCGAGCTGGTGAACCTGGTGAACGACCTAGAGGTGGGTGGATG
CATTTTGTTTTGGGAGGGGGGGGCAAGAGGGGGGGTTCCAGAAGAGTGAA
TCTATTCGGTGTGTTACATGTATGTATCATGCATGCAAACCCAACTAGAC
TCTTGTGTGCTATGCTGATGCCTGTCTGCCTCCTTGCTTGTCTCTGTCTG
TTTGTGTGTTTGTATGTAGCGGTTTGAAGTAAGCCACATTCTGATTTTAT
ACCTGCGTCCCGTGTGCTCGGTTATTGCTGCTTCTGCTTTTATGTTGAGA
TGTTGAGTCACCTTTGACAACGTATGTAGGAGAGAGCGACTAGCCATACA
TCGAGTAGATCGCTCTTAGAGAAACAGAAGCTCCCCCTCCCCTCGAGGAC
TCACTCACTACATGCACGGTAAAAATGATAAAAAAAAAACAACTACAGCA
TGCAAAATATGACCCCCCCTCGTCCCCCCCCCCCGTCCCCCTGCGCTCGC
ACTGTTTTTGAACATTTTTCGCTGTACTCTCTCTCTGGTTTCGGTACTCC
TCCAGATCGACTTGGCAAACGTTGCCACTAATTTCGGCTCGGCGTTCGAG
ACCACTTTCAACCTTCTCGACGGTGAGTGAGTTAGTCTTGCCACTTCTGC
TTCCTGCTTCCTGCTCTATCATTCTCCCCGAGTGTGATGCGTAACGTCCC
TCCGGTGAATCTAAGGACGGAGTAAATACGTAAAGGCCTTTTTTTGTTTC
TTCCGTGATCTATTTGAAGTATGGCGTGAAGAATCGCCGCAAAGTTGACG
TCTAGCTCGTGACGGCAGCGTTGCATGCTAGCTTAGCATAGATTTTTGTT
TTCAGGCTTGAGATCATTATCCAAATGTATATATATATATATATATATAT
TTCTTGGGACACTCAGCGGTTGTGTTACTTGTACATGTTGTTTTATGAGG
TGTACACTTAGCGGTTTGTTATGGGGCGTTTTTGAGTCCTTGTTCATGTG
TCAAATACTTGATGTTCATACGGTATGAGATGGTCAGTCAATACTTCAAT
AGTGTATTTTCACCGATGTGTGTGAATGAAATTTTCCCTCACGAAGGATG
GGATGGCTGGCTGACTCGCCCGCTTGCTCGCTCGCTCTTTTTGAGTTGTT
CGGGTCGGTCGTTCACGCACCGTTTCATCGTATCCATCTACATACATACG
ACTGACTAGCAACCGTTAAGATCTGAGTGAGACCTGCAGCTGCCAGCTTT
GTCTGCCTGCCTGTCTGCCTGTCTGCCTGCTTGCCTGCCTACCTAGATTT
GGAATGTAATTCGATGGATGTCAGATAGTTGATTTTTTGGGACCAGTGTA
TTGGTGTGCGTGATTAATCAGTTTTGGTGAATAAGTGATTGGCTTTTTTT
GCCGGTGCTCTTTTTCACACGAATATACTCGACCTACGAACGCATTTCTA
GGGCTTGGCTAGATCGAGTTTTTGATGAATCGATCGATCCCCACGGACAT
TTGAAATTCCAGGTAGGCAGGTACGTAGGTAAGTAAGTAAGTAAGTAAGT
AAGTAAGTGAGTGAGTCCTGTGAATGATCGATTGGTTGGTTGGTAAAAAT
TCCGCAACTTCGGAAGTTGTGATTCCTCAATGAAATTACACAGGTTCCAG
AAATAGAAACATAATCGAATTAATTTCTGTGAGAATCGATCTTGTACTTC
GTAGCACTGTAGACATGAATATATATATAATGAGTGAGAATGTTTCCGGA
GAACAGTCCCCGCTTCAAGCATATAGATATTCGTTGTGAAGTCGAACATA
CGATGTCGTCGTAGTAAATAGAAGTTCATCCATCGTATCTATGTATCTAT
GTATCTATGTATGCGTGCACTAATAATTGGAAATCATACTCATTCCTGTA
CACATGTTTTTTTTTTCTGCCATCAGCGTCGCGCGCGACGACCGGGCTCT
CATCGGGGTGCCAAACAGCGATCGTGTTCCTGACCGACGGGCAGAGGACC
GTGGGAGCTACCGCTGACGAGGTGATGTACGTTTGA

Coding sequence (CDS) from alignment at H-paniculata_contig10591:763..8248-

>mRNA_H-paniculata_contig10591.387.1 ID=mRNA_H-paniculata_contig10591.387.1|Name=mRNA_H-paniculata_contig10591.387.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1680bp|location=Sequence derived from alignment at H-paniculata_contig10591:763..8248- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTTGGACGCATACAACCAACGTTGTTTGGTGACCCAGGGAGAGTGCGC
CAACCTTCACCTGGATGCATGTCGGTCCCGTCTACCTTCTGGAGAGTGCA
CTTCAGAGGATATTTCGGAAGTCTGCGGGACAGCGGTTTTGGACGCATAC
AACCAACGTTGTTTGGTGACCCAGGGAGAGTGCGCCAACCTTCACCTGGA
TGCATGTCGGTCCCGTCTACCTTCTGGAGAGTGCACTTCAGAGGATATTT
CGGAAGTCTGCGGGACAGCGGATTGCGGAATGATCCGAGATTACCGGAAT
CCCACGGTTCGCCTGCCGGAATCCGTGGCGGTGGGCGAAAACCTCAACCC
TACCGACGGAAACGCGATCGAAACGGATTGCGGAATGATCCGAGATTACC
GGAATCCCACGGTTCGCCTGCCGGAATCCGTGGCGGTGGGCGAAAACCTC
AACCCTACCGACGGAAACGCGATCGAAACGATTTGCTATTCGGTTTTGCT
CAACGGTCCCCTGCGCGATCTCTACGCGAGGGCCAGTGCTGTGGGTTCCA
ACGCCGTATTTGCTATTCGGTTTTGCTCAACGGTCCCCTGCGCGATCTCT
ACGCGAGGGCCAGTGCTGTGGGTTCCAACGCCGTATACTTCGGAGCATGG
ACAGGCGTGTTTCGATACTTCCCGGGGTTTGCACAAGACGAGTGCGGCAG
CTATACTTCGGAGCATGGACAGGCGTGTTTCGATACTTCCCGGGGTTTGC
ACAAGACGAGTGCGGCAGCTATGACCCCCGGATCCGGCCGTGGTATGTGG
CGGCATCAAGCGGACCCAAGATGACCCCCGGATCCGGCCGTGGTATGTGG
CGGCATCAAGCGGACCCAAGGACGTGGTGATCGTTGTGGACGTGTCGGGG
AGCATGGGGCAGCACAATCGACTGGAGTTGGCGAAAGATGCTGCCGTAAC
GGTTATCAACACGCTGACGTGGTGATCGTTGTGGACGTGTCGGGGAGCAT
GGGGCAGCACAATCGACTGGAGTTGGCGAAAGATGCTGCCGTAACGGTTA
TCAACACGCTAGGTTCCGACTCGTACGTGAATGTAGTGGTGTTTTCTGAG
GAAGCTAGGGTGCTGTCGCCCAACTCTACTGCTCTCGTAAACGCGGACGC
AGAGCACGTGTCCGAGCTGGTGAACCTGGTGAACGACCTAGAGAGGTTCC
GACTCGTACGTGAATGTAGTGGTGTTTTCTGAGGAAGCTAGGGTGCTGTC
GCCCAACTCTACTGCTCTCGTAAACGCGGACGCAGAGCACGTGTCCGAGC
TGGTGAACCTGGTGAACGACCTAGAGATCGACTTGGCAAACGTTGCCACT
AATTTCGGCTCGGCGTTCGAGACCACTTTCAACCTTCTCGACGATCGACT
TGGCAAACGTTGCCACTAATTTCGGCTCGGCGTTCGAGACCACTTTCAAC
CTTCTCGACGCGTCGCGCGCGACGACCGGGCTCTCATCGGGGTGCCAAAC
AGCGATCGTGTTCCTGACCGACGGGCAGAGGACCGTGGGAGCTACCGCTG
ACGAGGTGATGTACGTTTGACGTCGCGCGCGACGACCGGGCTCTCATCGG
GGTGCCAAACAGCGATCGTGTTCCTGACCGACGGGCAGAGGACCGTGGGA
GCTACCGCTGACGAGGTGATGTACGTTTGA