mRNA_H-paniculata_contig16904.3870.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16904.3870.1
Unique NamemRNA_H-paniculata_contig16904.3870.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16904.3870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16904contigH-paniculata_contig16904:4328..4718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size391
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929338.789973-UTR-H-paniculata_contig16904:4327..44151622929338.789973-UTR-H-paniculata_contig16904:4327..4415Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16904 4328..4415 +
1691480821.1708658-UTR-H-paniculata_contig16904:4327..44151691480821.1708658-UTR-H-paniculata_contig16904:4327..4415Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16904 4328..4415 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929338.805556-CDS-H-paniculata_contig16904:4415..47181622929338.805556-CDS-H-paniculata_contig16904:4415..4718Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16904 4416..4718 +
1691480821.1792574-CDS-H-paniculata_contig16904:4415..47181691480821.1792574-CDS-H-paniculata_contig16904:4415..4718Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16904 4416..4718 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16904.3870.1prot_H-paniculata_contig16904.3870.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16904 4416..4718 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16904.3870.1

>prot_H-paniculata_contig16904.3870.1 ID=prot_H-paniculata_contig16904.3870.1|Name=mRNA_H-paniculata_contig16904.3870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MYVVTFDSRPCGEPRGCCPPVARRSQPSPPIIIVQILFFPSLDGIPPRRH
DQQVMFTSPSGRFPHRAQFGPALRGAKDRVLGAKVSNVIFRTINNTPRNE
L
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mRNA from alignment at H-paniculata_contig16904:4328..4718+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16904.3870.1 ID=mRNA_H-paniculata_contig16904.3870.1|Name=mRNA_H-paniculata_contig16904.3870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=391bp|location=Sequence derived from alignment at H-paniculata_contig16904:4328..4718+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCTTGTTACAGCAATCACTGCACTGTCTCAACACCATTTAGTGCACAG
GCAGGAGCAACGAGCGAACGGTTGCGCCAAGTCCGCGAATGTACGTCGTA
ACGTTTGATAGTCGCCCTTGCGGAGAACCCCGCGGTTGCTGCCCGCCAGT
AGCTCGTCGATCACAGCCTTCCCCTCCTATCATCATCGTTCAAATTCTTT
TTTTTCCATCTCTCGACGGCATCCCTCCTCGCAGACATGACCAACAGGTA
ATGTTTACATCACCAAGCGGGAGATTCCCACATAGAGCTCAGTTTGGCCC
TGCTCTCCGTGGGGCTAAAGACCGCGTTCTCGGCGCGAAAGTCTCAAACG
TGATTTTCAGAACAATTAACAATACGCCTCGAAACGAACTG
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Coding sequence (CDS) from alignment at H-paniculata_contig16904:4328..4718+

>mRNA_H-paniculata_contig16904.3870.1 ID=mRNA_H-paniculata_contig16904.3870.1|Name=mRNA_H-paniculata_contig16904.3870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig16904:4328..4718+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACGTCGTAACGTTTGATAGTCGCCCTTGCGGAGAACCCCGCGGTTG
CTGCCCGCCAGTAGCTCGTCGATCACAGCCTTCCCCTCCTATCATCATCG
TTCAAATTCTTTTTTTTCCATCTCTCGACGGCATCCCTCCTCGCAGACAT
GACCAACAGGTAATGTTTACATCACCAAGCGGGAGATTCCCACATAGAGC
TCAGTTTGGCCCTGCTCTCCGTGGGGCTAAAGACCGCGTTCTCGGCGCGA
AAGTCTCAAACGTGATTTTCAGAACAATTAACAATACGCCTCGAAACGAA
CTGATGTACGTCGTAACGTTTGATAGTCGCCCTTGCGGAGAACCCCGCGG
TTGCTGCCCGCCAGTAGCTCGTCGATCACAGCCTTCCCCTCCTATCATCA
TCGTTCAAATTCTTTTTTTTCCATCTCTCGACGGCATCCCTCCTCGCAGA
CATGACCAACAGGTAATGTTTACATCACCAAGCGGGAGATTCCCACATAG
AGCTCAGTTTGGCCCTGCTCTCCGTGGGGCTAAAGACCGCGTTCTCGGCG
CGAAAGTCTCAAACGTGATTTTCAGAACAATTAACAATACGCCTCGAAAC
GAACTG
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