prot_H-paniculata_contig1690.3867.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1690.3867.1
Unique Nameprot_H-paniculata_contig1690.3867.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length343
Homology
BLAST of mRNA_H-paniculata_contig1690.3867.1 vs. uniprot
Match: A0A6H5JU65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU65_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 5.820e-26
Identity = 85/226 (37.61%), Postives = 103/226 (45.58%), Query Frame = 0
Query:  151 CASPMATGRLYSVFKTVDAIALAIALKGCSGGEFNVSWNGLVTLSSPLVVASRTSLTITGVPTTATGELATLDGNNVTGLLDLEAGSKLL---------------------------------------------------LEGVILQNARRATGNGGAISADARDCEVSAKGSTFRYNMAESAEFGEGRGGAIALGQGAVANLENCTLSENYAAASGGGVFALGN 325
            CAS    G  Y+V    DA  LA+A+ GC+GG +NV+W G VTL  PLVVA+ +SL I G P  A G  A +DG  V                                                                LEGV L+NA RA+GNGGAI A+A  C V A  S+F  N A S  + EGRGGA+ALG G  A LENC +S N+A  SGG     G+
Sbjct:  101 CASSPTGGETYAVSSAADAADLAVAVGGCTGGAYNVTWTGAVTLEEPLVVAAASSLWILGAPG-ADGSPAAMDGGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGLEGVTLRNASRASGNGGAIRAEAEGCSVVAVDSSFEGNQAASIIYLEGRGGALALGGGGSAELENCVVSGNHAQQSGGAFSTQGD 325          
BLAST of mRNA_H-paniculata_contig1690.3867.1 vs. uniprot
Match: D8LRF9_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF9_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 7.680e-26
Identity = 73/136 (53.68%), Postives = 89/136 (65.44%), Query Frame = 0
Query:  190 GLVTLSSPLVVASRTSLTITGVPTTATGELATLDGNNVTGLLDLEAGSKLLLEGVILQNARRATGNGGAISADARDCEVSAKGSTFRYNMAESAEFGEGRGGAIALGQGAVANLENCTLSENYAAASGGGVFALGN 325
            G V L+ PLVVA+ +SL I G P  A G  A +DG  VTGL+DL  GS L LEGV L+NA RA+GNGGAI A+A  C V A  S+F  N A S+ + EGRGGA+ALG G  A L+NC +S N+A  SGG     G+
Sbjct:   31 GGVALAEPLVVAAASSLWILGEPG-ADGSPAAIDGGGVTGLVDLGEGSSLRLEGVTLRNASRASGNGGAIRAEAEGCSVVAVDSSFEGNQAASSFYLEGRGGALALGGGGSAELDNCVVSGNHAQQSGGAFSTQGD 165          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1690.3867.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JU65_9PHAE5.820e-2637.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRF9_ECTSI7.680e-2653.68Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..81
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 82..93
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 94..101
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 102..343
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..101
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 188..339

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1690contigH-paniculata_contig1690:11724..15538 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1690.3867.1mRNA_H-paniculata_contig1690.3867.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1690 11215..15538 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1690.3867.1 ID=prot_H-paniculata_contig1690.3867.1|Name=mRNA_H-paniculata_contig1690.3867.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=343bp
MQASRGVKEMPQRLRQRPRPPERARKPSEKMGGTNSRERLLRSRSLPHRR
RPGAVMTASTTTIKATTTSRLSSSSSSSTMTVLFVSSLLALIATGSSPCS
GSSRSSNSSSSLSFCFLGVAAQPTPPNNSTISSTSAPSTTATTSSSTTST
CASPMATGRLYSVFKTVDAIALAIALKGCSGGEFNVSWNGLVTLSSPLVV
ASRTSLTITGVPTTATGELATLDGNNVTGLLDLEAGSKLLLEGVILQNAR
RATGNGGAISADARDCEVSAKGSTFRYNMAESAEFGEGRGGAIALGQGAV
ANLENCTLSENYAAASGGGVFALGNSDIVFRSCVLNRNEAGYY
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011050Pectin_lyase_fold/virulence