mRNA_H-paniculata_contig1690.3867.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1690.3867.1
Unique NamemRNA_H-paniculata_contig1690.3867.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1690.3867.1 vs. uniprot
Match: A0A6H5JU65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU65_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.130e-24
Identity = 85/226 (37.61%), Postives = 103/226 (45.58%), Query Frame = 3 
Query:  960 CASPMATGRLYSVFKTVDAIALAIALKGCSGGEFNVSWNGLVTLSSPLVVASRTSLTITGVPTTATGELATLDGNNVTGLLDLEAGSKLL---------------------------------------------------LEGVILQNARRATGNGGAISADARDCEVSAKGSTFRYNMAESAEFGEGRGGAIALGQGAVANLENCTLSENYAAASGGGVFALGN 1484
            CAS    G  Y+V    DA  LA+A+ GC+GG +NV+W G VTL  PLVVA+ +SL I G P  A G  A +DG  V                                                                LEGV L+NA RA+GNGGAI A+A  C V A  S+F  N A S  + EGRGGA+ALG G  A LENC +S N+A  SGG     G+
Sbjct:  101 CASSPTGGETYAVSSAADAADLAVAVGGCTGGAYNVTWTGAVTLEEPLVVAAASSLWILGAPG-ADGSPAAMDGGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGLEGVTLRNASRASGNGGAIRAEAEGCSVVAVDSSFEGNQAASIIYLEGRGGALALGGGGSAELENCVVSGNHAQQSGGAFSTQGD 325
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BLAST of mRNA_H-paniculata_contig1690.3867.1 vs. uniprot
Match: D8LRF9_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF9_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 1.460e-24
Identity = 73/136 (53.68%), Postives = 89/136 (65.44%), Query Frame = 3 
Query: 1077 GLVTLSSPLVVASRTSLTITGVPTTATGELATLDGNNVTGLLDLEAGSKLLLEGVILQNARRATGNGGAISADARDCEVSAKGSTFRYNMAESAEFGEGRGGAIALGQGAVANLENCTLSENYAAASGGGVFALGN 1484
            G V L+ PLVVA+ +SL I G P  A G  A +DG  VTGL+DL  GS L LEGV L+NA RA+GNGGAI A+A  C V A  S+F  N A S+ + EGRGGA+ALG G  A L+NC +S N+A  SGG     G+
Sbjct:   31 GGVALAEPLVVAAASSLWILGEPG-ADGSPAAIDGGGVTGLVDLGEGSSLRLEGVTLRNASRASGNGGAIRAEAEGCSVVAVDSSFEGNQAASSFYLEGRGGALALGGGGSAELDNCVVSGNHAQQSGGAFSTQGD 165
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1690.3867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JU65_9PHAE1.130e-2437.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRF9_ECTSI1.460e-2453.68Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1690contigH-paniculata_contig1690:11215..15538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.6
Seed ortholog evalue1.5e-24
Seed eggNOG ortholog2880.D8LRF9
Hectar predicted targeting categorysignal anchor
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1540
Cds size1029
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1690.3867.1prot_H-paniculata_contig1690.3867.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1690 11724..15538 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929338.4607677-UTR-H-paniculata_contig1690:11214..117231622929338.4607677-UTR-H-paniculata_contig1690:11214..11723Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1690 11215..11723 +
1691480821.044967-UTR-H-paniculata_contig1690:11214..117231691480821.044967-UTR-H-paniculata_contig1690:11214..11723Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1690 11215..11723 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929338.4762232-CDS-H-paniculata_contig1690:11723..118061622929338.4762232-CDS-H-paniculata_contig1690:11723..11806Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1690 11724..11806 +
1691480821.0583792-CDS-H-paniculata_contig1690:11723..118061691480821.0583792-CDS-H-paniculata_contig1690:11723..11806Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1690 11724..11806 +
1622929338.490797-CDS-H-paniculata_contig1690:14592..155381622929338.490797-CDS-H-paniculata_contig1690:14592..15538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1690 14593..15538 +
1691480821.0683792-CDS-H-paniculata_contig1690:14592..155381691480821.0683792-CDS-H-paniculata_contig1690:14592..15538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1690 14593..15538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1690.3867.1

>prot_H-paniculata_contig1690.3867.1 ID=prot_H-paniculata_contig1690.3867.1|Name=mRNA_H-paniculata_contig1690.3867.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=343bp
MQASRGVKEMPQRLRQRPRPPERARKPSEKMGGTNSRERLLRSRSLPHRR
RPGAVMTASTTTIKATTTSRLSSSSSSSTMTVLFVSSLLALIATGSSPCS
GSSRSSNSSSSLSFCFLGVAAQPTPPNNSTISSTSAPSTTATTSSSTTST
CASPMATGRLYSVFKTVDAIALAIALKGCSGGEFNVSWNGLVTLSSPLVV
ASRTSLTITGVPTTATGELATLDGNNVTGLLDLEAGSKLLLEGVILQNAR
RATGNGGAISADARDCEVSAKGSTFRYNMAESAEFGEGRGGAIALGQGAV
ANLENCTLSENYAAASGGGVFALGNSDIVFRSCVLNRNEAGYY
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mRNA from alignment at H-paniculata_contig1690:11215..15538+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1690.3867.1 ID=mRNA_H-paniculata_contig1690.3867.1|Name=mRNA_H-paniculata_contig1690.3867.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4324bp|location=Sequence derived from alignment at H-paniculata_contig1690:11215..15538+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTATACACACGCGCAACCACCACAGCAAGGATTCATCGGTCCTCCACTA
GGCATATCGTCGCGGAACCGCACAGACGTCTACAAATAGATATTTCTCGT
TGATCAGCTCAGCAGTCCAGGTTCTCATCCTCACGACTTCGTCCGAAAGG
TTGAAGGGTTGAGAGGCACAGACAGCGGTTTCGAGCAGTTTCGTACTCAG
CAGTAGCAGCAACAGGTGACCCTGCAGCAGCACACGCCCTGTTGGAAGGT
CTGGCCGAGCACTGCCTTTAGTTAGCCCCTTGTCGGGCACCAATTCTCTA
CTGTAAAGCCGGGCTCGGAATTCGCTCTCGATCCTCACCCAAGAGTTTTT
AGTTGCTTCCAACTGGACGAAGTCACTGGACAACTCAGTCGGTACAGTCA
GGAGAAACCTCTCACACACGTACAGCGGTTTTGCAACACTGTAATTTGCA
GTTTTGGTGCAAATTATCGTGTAAAGCTCGTCTCGATTTGCTGGCTGCGA
AGCAGCAGCATGCAGGCTAGCCGGGGAGTTAAAGAAATGCCACAGCGGCT
CAGGCAGCGCCCCAGGCCCCCAGAGCGCGCGCGAAAGCCCAGGTGAGCAA
TCGTGGGTAGGGATGCCACAACGTAGTTGCTATCATTGTACATACAAACA
ATTGATCATATGTATCTCGCAGTTTTTTTACCGATTTATTATGTATGTTC
CCCTCTGCAAGTTGACTCCAAGTCGTTTTCCTTGCGCTACTGCCATTTAC
GATCAGAGATACACAAAGTTACGCTTTATCTACATAATATATGACTGATA
TATCCTCTGACAGCTTCAGCGCAATTGTGAACCCTTCCGCCGCCTTTAAG
TTGCTATTTTATTCCTCTACAGAATATTTTCTGTGCCCACCACCCACCAA
CGATCAGACAAGACTTTCAAACGTATTTTCCCATTGTCTCCAGAATCCTG
TGAATTCGCTTTTTTGGTGTGGAAAACGCGTGATACAGCAGTGACCAGCG
TCTGGACCAGTTTTCCAAAGAATCATAGGTCCTCCAGCCAGAATAGGTTA
TTGGGGAATCTGCACAGGATCGTCTCTTTCTCTGTGTACGACACGACCTG
AGAATTAATTCTAGCGGCCACTGTTTGGATGGAAACTTTGAAATATGGAA
GTATCCCATGTGAGATGTGAAGAGCCAAAATTTTTGATTTGAAAAGTGTT
AAGGGGCCAATTTTATTGACATGACTTCATTCTTCAGGATTGTGTACCGG
TCCGATGTATACCCGATGTAACGTTTCTATCGGGGTTTTTTGAACTAACG
TTTCGGCGTTTACCGTTTCCGCCTCTAAACGCGATTTATGGATCATTTTC
CATGGCATGTCTGTTTGAACCATACGCATAATGACCGCGGGTCGTATTTA
CTTTCTGCGGGCAGGTAATTCACCTTTATCAACAGCCTCTGTTTGTCCTG
CCCGCTACACTCGTGTGATCCTGCGTACAACCGTTATGTGGCTGATAACG
ATGTATCATCAAATCGATTATTTGTACCCATGTACAGCCAAAATTCCAAA
TTCCAGTGTTTTCGTATTTTATCGTTTGTCTTTCCCCAAGAACAAAAGCA
AGAAAAAAGCTACCTGCATGTGCCCCCCATATTATATTTTCAAGGGCTGT
TTTTTTTTAAACCAAATTTGTTGCTTGTCATGAGTAGTAGTGGGCCTAAT
GAGTCATGATTCTGTTTTACTCCTCTGTGTGTGTGTGCGTGTGTGTGCTG
TACATGTATCTCACTAAAAAGTAGTTCCCCGCGGATACCACCAGATCTAC
TCAAACCAAGTCCGTGGCACACTCAGTTGGTTGAGCGCTGATGCCCGAAC
CGCTTTTTGTTGTACCGAGAGGGTGTGGAGGGTATTCGCGAGTTTTTCAC
TTTGTAGTTAGTTTTCTCTTTCTATGGTCAGACGCTGTGATTCGCTTGAC
ACGCTGCCTTGGCCAATTTGACACGGCGAATATGCATGTGCAAGTCAAAA
TGACACAGTTACCCTCTGCCACGCTTTTTTAACCGCAAAAGCAATTGTGT
ATTTTTTATTCTGTCGAAGGAAGATCTGTGTTTTCACATTGAAGGCGAGC
TTGGACTACGTATATATACATATTTTGTTTTTGTGCCTCGTTATTAAATA
TATAGATGCACATGAATGTGGTGGCCACCTAAGAAAAATATCTCGAAATG
GGGTAATAATTATCCGATGTCTGTCGAGGACAGTGACCCACCCTCATATT
AACATTGACAATACCGGTTGATAACTTGTCTGCTTTTGGTCATCAAGATC
ATGGATTCGAACCTTACCTACCAACTTACCCATAAGTTTGGCGCCTGACA
CAAAGTCACAACTATGGTGAAAGGAATTAAAGGCAACATGTTCATAACTT
GTGTGAAGAAAAGAGATGAAAGCACCTCGTCGTCAGCCGGTCGGAGTCCG
GTTGCTTCTAAACTGAAGTCTTTCAAAAGCAAGAAACAACAGAAAGATGA
GGATAACGTGGTAGCCACCTGAGAAAATCACCCAACGCCTTTCGAGGACA
TGACTTCATTTTTACGTTAGTATATGTAGAGACATCGGACAAGGCCCATC
AAGGTACAAGATTTTTTTTCATTCGGTTTCATCCGCCGGACGAACACACA
ACATTCAAGTGATTGTGTTATGAGATGTTGATTGCGGGACGTGACAGTCA
TTGTCTAATGTGATGGTTCCATCCCCAATTCATGGGTTTATGTCATGTAG
CCTCAGTTTGAGCTGGGAGCAGGAAGCACGGACCGTGTTACCACCCCACC
AAGTGTCAGACTTGTATCGACTCAGGGTTGTTCCTGACGTACAGCAATAT
ACAGCTAATACAAGACACTACTTCTACCACCCCAGCCGTACCGGTCTGAG
AGTATTGTTCAGAACAGTCAGTAATAGAAAACAATAACCTTCATGTGTGA
GATACTCCGCAATACCGCATAGCAGATATCATCACAATGGAGACATTAAA
AAAAAAAAGGTCTTCACCTTGGAGTCCAGTATGAGCACGATATTTATGCT
ATATGCCCTTCCGCACCATCCACAACCGCTCCAATCTAACATAAGTGAAC
AATTGAACAGGGGGGTCAGCATCCTATTATTTCATACACCGTACATTCTG
TAACTCAAATGGACACGTTTTTAACATCTGAGTCAGCCATTCGAAGTAGT
CGTACCCAACGACGGGTAACCTGTTTTCACGACAAGACATTACCTTATTC
CCCCCTTCCCTACTAAGTGACCTCGTCACTTCTCTAGTATCGCCGGTGTC
ATTGTCCATTCTCGCTTGTCACGTTCTCCACGCCTGTTTTTGCTACGTTT
CTCTCACGCGAAATGCCATTGTTCTCAGCGAAAAAATGGGAGGTACAAAT
AGTCGCGAACGGCTTCTCCGCAGCAGGAGCCTTCCGCACCGACGGCGGCC
GGGAGCGGTCATGACAGCCTCAACAACAACGATTAAAGCGACAACGACCT
CACGGTTATCGTCTTCATCATCGTCATCTACCATGACTGTGCTGTTTGTG
TCGTCCCTTCTGGCCCTGATTGCCACCGGCTCTTCCCCCTGCTCCGGCAG
TAGCAGAAGTAGCAACAGCAGCAGCTCTCTGAGCTTCTGCTTTTTAGGCG
TGGCGGCACAACCAACGCCGCCAAACAATAGCACCATCAGCAGCACGAGT
GCCCCTTCAACAACAGCAACCACAAGCTCTTCAACTACTTCAACCTGCGC
CAGCCCCATGGCCACCGGCCGGTTGTACTCCGTTTTCAAGACGGTAGACG
CGATTGCCCTCGCAATCGCCCTGAAGGGGTGCTCAGGTGGAGAATTCAAC
GTGAGCTGGAATGGCCTCGTGACGCTATCCTCGCCGCTGGTCGTTGCGTC
CCGGACGTCGCTAACGATCACTGGGGTGCCCACAACGGCCACGGGCGAAC
TGGCGACGCTGGACGGCAACAACGTCACGGGGCTCTTGGACCTAGAAGCT
GGAAGCAAGTTATTGCTGGAAGGGGTCATTCTCCAGAACGCTCGGCGGGC
AACCGGGAACGGCGGAGCTATCTCTGCTGACGCGCGGGACTGTGAGGTCT
CTGCCAAAGGGTCGACTTTTCGATACAACATGGCAGAGTCGGCTGAATTC
GGAGAGGGCCGGGGGGGAGCTATAGCGCTCGGACAGGGTGCCGTGGCGAA
TCTAGAGAACTGTACATTATCAGAGAATTACGCGGCCGCCTCTGGCGGAG
GCGTTTTCGCGCTCGGAAACTCAGATATCGTGTTCCGGAGCTGCGTGTTG
AATCGGAACGAGGCGGGATATTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig1690:11215..15538+

>mRNA_H-paniculata_contig1690.3867.1 ID=mRNA_H-paniculata_contig1690.3867.1|Name=mRNA_H-paniculata_contig1690.3867.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2058bp|location=Sequence derived from alignment at H-paniculata_contig1690:11215..15538+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGCTAGCCGGGGAGTTAAAGAAATGCCACAGCGGCTCAGGCAGCG
CCCCAGGCCCCCAGAGCGCGCGCGAAAGCCCAGATGCAGGCTAGCCGGGG
AGTTAAAGAAATGCCACAGCGGCTCAGGCAGCGCCCCAGGCCCCCAGAGC
GCGCGCGAAAGCCCAGCGAAAAAATGGGAGGTACAAATAGTCGCGAACGG
CTTCTCCGCAGCAGGAGCCTTCCGCACCGACGGCGGCCGGGAGCGGTCAT
GACAGCCTCAACAACAACGATTAAAGCGACAACGACCTCACGGTTATCGT
CTTCATCATCGTCATCTACCATGACTGTGCTGTTTGTGTCGTCCCTTCTG
GCCCTGATTGCCACCGGCTCTTCCCCCTGCTCCGGCAGTAGCAGAAGTAG
CAACAGCAGCAGCTCTCTGAGCTTCTGCTTTTTAGGCGTGGCGGCACAAC
CAACGCCGCCAAACAATAGCACCATCAGCAGCACGAGTGCCCCTTCAACA
ACAGCAACCACAAGCTCTTCAACTACTTCAACCTGCGCCAGCCCCATGGC
CACCGGCCGGTTGTACTCCGTTTTCAAGACGGTAGACGCGATTGCCCTCG
CAATCGCCCTGAAGGGGTGCTCAGGTGGAGAATTCAACGTGAGCTGGAAT
GGCCTCGTGACGCTATCCTCGCCGCTGGTCGTTGCGTCCCGGACGTCGCT
AACGATCACTGGGGTGCCCACAACGGCCACGGGCGAACTGGCGACGCTGG
ACGGCAACAACGTCACGGGGCTCTTGGACCTAGAAGCTGGAAGCAAGTTA
TTGCTGGAAGGGGTCATTCTCCAGAACGCTCGGCGGGCAACCGGGAACGG
CGGAGCTATCTCTGCTGACGCGCGGGACTGTGAGGTCTCTGCCAAAGGGT
CGACTTTTCGATACAACATGGCAGAGTCGGCTGAATTCGGAGAGGGCCGG
GGGGGAGCTATAGCGCTCGGACAGGGTGCCGTGGCGAATCTAGAGAACTG
TACATTATCAGAGAATTACGCGGCCGCCTCTGGCGGAGGCGTTTTCGCGC
TCGGAAACTCAGATATCGTGTTCCGGAGCTGCGTGTTGAATCGGAACGAG
GCGGGATATTATCGAAAAAATGGGAGGTACAAATAGTCGCGAACGGCTTC
TCCGCAGCAGGAGCCTTCCGCACCGACGGCGGCCGGGAGCGGTCATGACA
GCCTCAACAACAACGATTAAAGCGACAACGACCTCACGGTTATCGTCTTC
ATCATCGTCATCTACCATGACTGTGCTGTTTGTGTCGTCCCTTCTGGCCC
TGATTGCCACCGGCTCTTCCCCCTGCTCCGGCAGTAGCAGAAGTAGCAAC
AGCAGCAGCTCTCTGAGCTTCTGCTTTTTAGGCGTGGCGGCACAACCAAC
GCCGCCAAACAATAGCACCATCAGCAGCACGAGTGCCCCTTCAACAACAG
CAACCACAAGCTCTTCAACTACTTCAACCTGCGCCAGCCCCATGGCCACC
GGCCGGTTGTACTCCGTTTTCAAGACGGTAGACGCGATTGCCCTCGCAAT
CGCCCTGAAGGGGTGCTCAGGTGGAGAATTCAACGTGAGCTGGAATGGCC
TCGTGACGCTATCCTCGCCGCTGGTCGTTGCGTCCCGGACGTCGCTAACG
ATCACTGGGGTGCCCACAACGGCCACGGGCGAACTGGCGACGCTGGACGG
CAACAACGTCACGGGGCTCTTGGACCTAGAAGCTGGAAGCAAGTTATTGC
TGGAAGGGGTCATTCTCCAGAACGCTCGGCGGGCAACCGGGAACGGCGGA
GCTATCTCTGCTGACGCGCGGGACTGTGAGGTCTCTGCCAAAGGGTCGAC
TTTTCGATACAACATGGCAGAGTCGGCTGAATTCGGAGAGGGCCGGGGGG
GAGCTATAGCGCTCGGACAGGGTGCCGTGGCGAATCTAGAGAACTGTACA
TTATCAGAGAATTACGCGGCCGCCTCTGGCGGAGGCGTTTTCGCGCTCGG
AAACTCAGATATCGTGTTCCGGAGCTGCGTGTTGAATCGGAACGAGGCGG
GATATTAT
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