mRNA_H-paniculata_contig169.3866.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig169.3866.1
Unique NamemRNA_H-paniculata_contig169.3866.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig169.3866.1 vs. uniprot
Match: A0A836CD75_9STRA (NUDIX hydrolase domain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD75_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.400e-29
Identity = 60/129 (46.51%), Postives = 80/129 (62.02%), Query Frame = 1
Query:    1 SFPGGHIEPGEGPIEAALRETREEVGPSLGHVEVLGTCQAVPA--GIKFSSQIAVVKTPQRG----------VESVFTLSVSELLDPGFRVVDDLGLRGKHPAFTAGPSRVWGLTAIIADGVLQQAILP 351
            +FPGGHI+ GEGP++AALRET EEVG  +G V ++G CQ VPA  G + +  +  V+    G          V   FT+ ++ LLDP  R ++ LG RG  P F A P R+WGLTA I DGVL+ A++P
Sbjct:   69 AFPGGHIKAGEGPVDAALRETVEEVGEGIGAVHIVGHCQTVPAVTGTRVTPVVGWVERDVDGCRRLELCPDEVAHAFTVPLAHLLDPANRGMERLGARGDMPVFMADPHRIWGLTAFITDGVLRNAVVP 197          
BLAST of mRNA_H-paniculata_contig169.3866.1 vs. uniprot
Match: A0A482SM29_9ARCH (CoA pyrophosphatase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SM29_9ARCH)

HSP 1 Score: 95.5 bits (236), Expect = 4.430e-22
Identity = 55/134 (41.04%), Postives = 82/134 (61.19%), Query Frame = 1
Query:    1 SFPGGHIEPGEGPIEAALRETREEVGPSLGHVEVLGTCQAVPA--GIKFSSQIAVVKTPQRG----------VESVFTLSVSELLDPGFRVVDDL---GLRGKHPAFTAGPS--RVWGLTAIIADGVLQQAILP 351
            SFPGGHI+P E  IEAA+RETREE+G  +G ++VLG  Q VPA  G   +  +A V+T  +           V+ +FT +++EL +P +R + +L   G++ K P +  G S  R+WGLTA+I D +L   ++P
Sbjct:   74 SFPGGHIDPNETAIEAAIRETREELGDGIGIIQVLGVAQTVPAITGTLVTPVLAYVETDVQDLQHLTPSPSEVDVIFTRTLAELTNPSYRTIQELERQGVKYKMPVY-GGQSEHRIWGLTAMILDPILHNVVMP 206          
BLAST of mRNA_H-paniculata_contig169.3866.1 vs. uniprot
Match: A0A0G4EFA4_VITBC (Nudix hydrolase domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EFA4_VITBC)

HSP 1 Score: 97.8 bits (242), Expect = 2.290e-21
Identity = 53/132 (40.15%), Postives = 78/132 (59.09%), Query Frame = 1
Query:    1 SFPGGHIEPGEGPIEAALRETREEVGPSLGHVEVLGTCQAVPA----------GI--KFSSQIAVVKTPQRGVESVFTLSVSELLDPGFRVVDDLGLRGKH---PAFTAGPSRVWGLTAIIADGVLQQAILP 351
            SFPGGHIE GE PI+AALRET EE+G  +G + ++GTC+ V A          G+  +   ++  ++     V  VFTLS+ +L DP  + ++ L   G     PA+  G  +VWGLTA I +GVL++ ++P
Sbjct:  332 SFPGGHIERGETPIDAALRETHEELGSRIGDITIIGTCEQVVAVTGTIVHPVIGLLRRDVGELLWIEKSDDEVADVFTLSIEQLTDPSLQTLEQLPRGGSTYTVPAYLGGVHKVWGLTAFILEGVLRRVVVP 463          
BLAST of mRNA_H-paniculata_contig169.3866.1 vs. uniprot
Match: A0A7S3NPN8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NPN8_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.140e-15
Identity = 48/129 (37.21%), Postives = 67/129 (51.94%), Query Frame = 1
Query:    1 SFPGGHIEPGEGPIEAALRETREEVGPSLGH-VEVLGTCQAV--PAGIKFSSQIAV---------VKTPQRGVESVFTLSVSELLDPGFRVVDDLGLRGKHPAFTAGPSRVWGLTAIIADGVLQQAILP 351
            SFPGGH+E  E P++AA RE  EE+G       +++  C  +  P+G+  +  +A+         +K  +  V SVF L ++ LLD   R       RG+ P F  GP  VWGLTA I DGVL   + P
Sbjct:  103 SFPGGHLEAEENPVQAAFREAEEELGYEFRRDFQLVDECSDIMAPSGVVVTPVVAIRSRELNLENLKLSEE-VASVFALPITHLLDDNHREWRTYEGRGRMPVFFGGPEEVWGLTAYILDGVLDAVVAP 230          
BLAST of mRNA_H-paniculata_contig169.3866.1 vs. uniprot
Match: L8TL87_9MICC (NUDIX hydrolase n=3 Tax=Micrococcaceae TaxID=1268 RepID=L8TL87_9MICC)

HSP 1 Score: 77.4 bits (189), Expect = 5.430e-15
Identity = 52/135 (38.52%), Postives = 69/135 (51.11%), Query Frame = 1
Query:    1 SFPGGHIEPGEGPIEAALRETREEVGPSLGHVEVLGTCQAVPAGIKFSSQIAVV-------KTPQRGVE-----SVFTLSVSELLDPGFRVVDDLGLRGK---HPAFTAGPSRVWGLTAIIADGVLQQA--ILPW 354
            +FPGG I+ GE P+EAALRE  EE G   G VEVLGT Q +  G+  S+ +           +P R V+      VF + V +LLDP  RV+  +   G+    P FT     VWG T I+  G+  Q    +PW
Sbjct:   83 AFPGGSIDAGESPVEAALREAEEETGLDAGGVEVLGTLQQL--GLAHSNFLVTPVLGWWHSPSPVRVVDYAESAQVFRVPVRDLLDPDHRVMATVHRAGRTFDSPGFTVNGVLVWGFTGIVLSGLFDQLGWSVPW 215          
BLAST of mRNA_H-paniculata_contig169.3866.1 vs. uniprot
Match: UPI00185271E1 (CoA pyrophosphatase n=1 Tax=Catenulispora sp. TaxID=1962977 RepID=UPI00185271E1)

HSP 1 Score: 77.4 bits (189), Expect = 6.490e-15
Identity = 51/124 (41.13%), Postives = 68/124 (54.84%), Query Frame = 1
Query:    1 SFPGGHIEPGEGPIEAALRETREEVGPSLGHVEVLGTC--QAV-PAGIKFSSQIAVVKTPQ-------RGVESVFTLSVSELLDPG--FRVVDDLGLRGKHPAFTAGPSRVWGLTAIIADGVLQ 336
            +FPGG ++PGEGP+  ALRE  EE       V+V G    Q V P+    +  +   +TP        R V SV  ++VS+L+DP    R+V   GL G  PAF AGP  +WG TA + DGVL+
Sbjct:   79 AFPGGKVDPGEGPVTTALREANEETDVDPAGVQVFGILPDQYVGPSDFLVTPVLGWWRTPSPVRVRDTREVASVARIAVSDLVDPANRMRLVHPSGLSG--PAFEAGPLLIWGFTAALLDGVLK 200          
BLAST of mRNA_H-paniculata_contig169.3866.1 vs. uniprot
Match: UPI001D0F0F76 (CoA pyrophosphatase n=1 Tax=unclassified Cellulomonas TaxID=2620175 RepID=UPI001D0F0F76)

HSP 1 Score: 76.3 bits (186), Expect = 1.810e-14
Identity = 50/134 (37.31%), Postives = 66/134 (49.25%), Query Frame = 1
Query:    1 SFPGGHIEPGE-GPIEAALRETREEVGPSLGHVEVLGTCQAVPAGIK----------FSSQIAVVKTPQRGVESVFTLSVSELLDPGFR---VVDDLGLRGKHPAFTAGPSRVWGLTAIIADGVLQQA--ILPW 354
            SFPGG ++P + GPIEAALRE REE G     V+VLG    +P  +           +S   AV          VF + V++LL PG R    V   G+  + PAF AG   VWG TA++ D +       +PW
Sbjct:   94 SFPGGRLDPADRGPIEAALREAREETGLDPEGVDVLGVLPPLPVAVSNHLVTPVVGWWSHPSAVAAVDHAETADVFRVPVADLLSPGNRRTATVTRGGVTYRSPAFLAGDHLVWGFTALVLDAMFDTLGWDVPW 227          
BLAST of mRNA_H-paniculata_contig169.3866.1 vs. uniprot
Match: C7Q3R6_CATAD (NUDIX hydrolase n=2 Tax=Catenulispora TaxID=414878 RepID=C7Q3R6_CATAD)

HSP 1 Score: 76.3 bits (186), Expect = 1.860e-14
Identity = 51/133 (38.35%), Postives = 66/133 (49.62%), Query Frame = 1
Query:    1 SFPGGHIEPGEGPIEAALRETREEVGPSLGHVEVLGTCQAVPAGIKFSSQIAVV------KTPQ-------RGVESVFTLSVSELLDPGFRVVDDLGLRGKHPAFTAGPSRVWGLTAIIADGVLQQA--ILPW 354
            +FPGG ++PGEGP+  ALRE  EE       V+V G    +P    F S   V       ++P        R V SV  ++VSEL+DP  R+          PAF AGP  +WG TA + DGVL+     LPW
Sbjct:   82 AFPGGAVDPGEGPVATALREANEETDLDPAGVQVFGI---LPDQYVFPSDFLVTPVLGWWRSPSPVRVRDVREVASVHRIAVSELVDPANRLRVGSPSGTSSPAFEAGPLLIWGFTAALLDGVLKAGGWELPW 211          
BLAST of mRNA_H-paniculata_contig169.3866.1 vs. uniprot
Match: UPI0018917475 (CoA pyrophosphatase n=2 Tax=Catenulispora TaxID=414878 RepID=UPI0018917475)

HSP 1 Score: 74.7 bits (182), Expect = 6.510e-14
Identity = 47/125 (37.60%), Postives = 63/125 (50.40%), Query Frame = 1
Query:    1 SFPGGHIEPGEGPIEAALRETREEVGPSLGHVEVLGTCQAVPAGIKFSSQIAVV------KTPQ-------RGVESVFTLSVSELLDPGFRVVDDLGLRGKHPAFTAGPSRVWGLTAIIADGVLQ 336
            +FPGG ++PGEGP+  ALRE  EE       V+V G    +P    F S   V       +TP        R V SV  ++V +L+DP  R++         PAF AGP  +WG TA + DGVL+
Sbjct:   76 AFPGGAVDPGEGPVATALREANEETDLDPAGVQVFGI---LPDQYVFPSDFLVTPVLGWWRTPSPVRVRDAREVASVCRIAVRDLVDPANRMLVGSPSGNSSPAFDAGPLLIWGFTAALLDGVLR 197          
BLAST of mRNA_H-paniculata_contig169.3866.1 vs. uniprot
Match: A0A7R9U5Y6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5Y6_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 7.230e-14
Identity = 46/126 (36.51%), Postives = 62/126 (49.21%), Query Frame = 1
Query:    1 SFPGGHIEPGEGPIEAALRETREEVGPSLGHVEVLGTCQAVPA--GIKFSSQIAVVKTP---------QRGVESVFTLSVSELLDPGFRVVDDLGLRGKHPAFTAGPSRVWGLTAIIADGVLQQAI 345
            SFPGGH+E  E     ALRET EE+G S  H+  LG C+ +PA  G   +  I ++K           +  VE+VFTL +  LL      +     RG  P F      VWGLTA+I  G ++  +
Sbjct:   88 SFPGGHVEADESYERCALRETYEELGISPEHITTLGFCETIPAVTGTMVTPVIGLLKPDLTDVPLTLSEDEVETVFTLPIRALLSDALLEMRKYENRGTLPVFHGADHEVWGLTAMILHGFVENCL 213          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig169.3866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CD75_9STRA2.400e-2946.51NUDIX hydrolase domain-like protein n=1 Tax=Tribon... [more]
A0A482SM29_9ARCH4.430e-2241.04CoA pyrophosphatase n=1 Tax=archaeon TaxID=1906665... [more]
A0A0G4EFA4_VITBC2.290e-2140.15Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A7S3NPN8_9STRA1.140e-1537.21Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
L8TL87_9MICC5.430e-1538.52NUDIX hydrolase n=3 Tax=Micrococcaceae TaxID=1268 ... [more]
UPI00185271E16.490e-1541.13CoA pyrophosphatase n=1 Tax=Catenulispora sp. TaxI... [more]
UPI001D0F0F761.810e-1437.31CoA pyrophosphatase n=1 Tax=unclassified Cellulomo... [more]
C7Q3R6_CATAD1.860e-1438.35NUDIX hydrolase n=2 Tax=Catenulispora TaxID=414878... [more]
UPI00189174756.510e-1437.60CoA pyrophosphatase n=2 Tax=Catenulispora TaxID=41... [more]
A0A7R9U5Y6_9STRA7.230e-1436.51Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig169contigH-paniculata_contig169:44583..45452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score77.4
Seed ortholog evalue4.9e-12
Seed eggNOG ortholog479433.Caci_8861
Preferred namemutT
KEGG rclassRC00002
KEGG koko:K01515,ko:K03574,ko:K16855,ko:K17816
KEGG ReactionR00961,R01054,R10235,R10815
KEGG Pathwayko00230,ko03018,map00230,map03018
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NUDIX domain
EggNOG OGs2I574@201174,COG1051@1,COG1051@2
EC3.6.1.13,3.6.1.55,3.6.1.56,3.6.1.62,3.6.1.64
COG Functional cat.F
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03400
Exons2
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929338.407632-CDS-H-paniculata_contig169:44582..447561622929338.407632-CDS-H-paniculata_contig169:44582..44756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig169 44583..44756 -
1691480821.0267053-CDS-H-paniculata_contig169:44582..447561691480821.0267053-CDS-H-paniculata_contig169:44582..44756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig169 44583..44756 -
1622929338.423132-CDS-H-paniculata_contig169:45272..454521622929338.423132-CDS-H-paniculata_contig169:45272..45452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig169 45273..45452 -
1691480821.0368853-CDS-H-paniculata_contig169:45272..454521691480821.0368853-CDS-H-paniculata_contig169:45272..45452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig169 45273..45452 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig169.3866.1prot_H-paniculata_contig169.3866.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig169 44583..45452 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig169.3866.1

>prot_H-paniculata_contig169.3866.1 ID=prot_H-paniculata_contig169.3866.1|Name=mRNA_H-paniculata_contig169.3866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
SFPGGHIEPGEGPIEAALRETREEVGPSLGHVEVLGTCQAVPAGIKFSSQ
IAVVKTPQRGVESVFTLSVSELLDPGFRVVDDLGLRGKHPAFTAGPSRVW
GLTAIIADGVLQQAILPW
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mRNA from alignment at H-paniculata_contig169:44583..45452-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig169.3866.1 ID=mRNA_H-paniculata_contig169.3866.1|Name=mRNA_H-paniculata_contig169.3866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=870bp|location=Sequence derived from alignment at H-paniculata_contig169:44583..45452- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCATTCCCCGGAGGACACATTGAGCCTGGCGAGGGGCCGATTGAAGCCGC GCTCAGAGAAACGCGAGAGGAAGTCGGACCGAGCCTTGGACATGTAGAAG TTCTGGGCACTTGCCAGGCAGTCCCGGCAGGTATCAAGTTCTCTAGCCAA ATCGCTGTAGTAAAAACACCTCAACGTGGAGTAACATTTCTCCGTTTTTT TTTACTGTACCCTTGCAGCATGAACTATCGTCGAGTGCATGGTCGTGGAG GTTGTGTGAGACCTTTTGATATTTTATTTCGGTTATGGTTCTCTTCTCCG TTTCGTCTGTCAAGCAGTAACGGGCACGATGGTGACCCCAGTGCTGGCGT TCGTGTATGACGACGTAGGACCGCGGCTGCCTAGCTTGGTTCTCAGTCCA GACGAGGTGAATTAATTGTACCTTGTGTAAGGGAGAGATGTTTCAACGTT CGTCTATGTTATTTCTGCAGCGAGCCGTACCATGAGGTGCAAACAGCCCG GGGATAGGGCGTGCTGTATCTACGTGGTACTTTATGAGCGGAGCGAACTG AGCAGGACAGCAAGTGTCTGGATAACGTAGACTAAAGTCTATCTGTACAT AGTATTCTGGATTTTGGCATGCCGCTTGCTGCTGCAACTGCCAAGCTCCA TCGAAGCTCACCCGTAACACATCATTTTATGTGTTATCTTGTATAGGTGG AAAGTGTGTTCACCCTTTCCGTCAGCGAGCTACTAGATCCGGGTTTTCGA GTCGTAGATGATCTTGGACTGCGAGGGAAACATCCCGCCTTCACTGCTGG ACCCAGTCGTGTATGGGGGCTCACGGCCATCATTGCAGACGGTGTTTTAC AGCAAGCCATTCTACCATGG
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Coding sequence (CDS) from alignment at H-paniculata_contig169:44583..45452-

>mRNA_H-paniculata_contig169.3866.1 ID=mRNA_H-paniculata_contig169.3866.1|Name=mRNA_H-paniculata_contig169.3866.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig169:44583..45452- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCATTCCCCGGAGGACACATTGAGCCTGGCGAGGGGCCGATTGAAGCCGC
GCTCAGAGAAACGCGAGAGGAAGTCGGACCGAGCCTTGGACATGTAGAAG
TTCTGGGCACTTGCCAGGCAGTCCCGGCAGGTATCAAGTTCTCTAGCCAA
ATCGCTGTAGTAAAAACACCTCAACGTGGATCATTCCCCGGAGGACACAT
TGAGCCTGGCGAGGGGCCGATTGAAGCCGCGCTCAGAGAAACGCGAGAGG
AAGTCGGACCGAGCCTTGGACATGTAGAAGTTCTGGGCACTTGCCAGGCA
GTCCCGGCAGGTATCAAGTTCTCTAGCCAAATCGCTGTAGTAAAAACACC
TCAACGTGGAGTGGAAAGTGTGTTCACCCTTTCCGTCAGCGAGCTACTAG
ATCCGGGTTTTCGAGTCGTAGATGATCTTGGACTGCGAGGGAAACATCCC
GCCTTCACTGCTGGACCCAGTCGTGTATGGGGGCTCACGGCCATCATTGC
AGACGGTGTTTTACAGCAAGCCATTCTACCATGGGTGGAAAGTGTGTTCA
CCCTTTCCGTCAGCGAGCTACTAGATCCGGGTTTTCGAGTCGTAGATGAT
CTTGGACTGCGAGGGAAACATCCCGCCTTCACTGCTGGACCCAGTCGTGT
ATGGGGGCTCACGGCCATCATTGCAGACGGTGTTTTACAGCAAGCCATTC
TACCATGG
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