mRNA_H-paniculata_contig169.3865.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig169.3865.1 vs. uniprot
Match: A0A6H5JID7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JID7_9PHAE) HSP 1 Score: 336 bits (861), Expect = 1.090e-102 Identity = 183/288 (63.54%), Postives = 215/288 (74.65%), Query Frame = 2
Query: 1094 FCRVKASP---PREEQGPR-RNEDDLSVSTR--ISNEVDSAVESDVRRVKFRAKVMVAVLVLGLLVATIVDLACHDNVRNFLGETFEWIECNPRSGVVVFAGLFCVATLLFVPGIILTIGAGVAFGRAMGFGWGLLWGSVAVLGGALMACIIAFYLGRYILHEQAQSCAKRYRILGAVNKAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSVRDYLIGTVGVIPGTIAFVFIGASTAGTMNEGDRMDDEGADTTACLIRMVVLIVGXXXXXXXXXXXXIYARRAL 1939
F KA P P ++GP R + + + R + EV AVE D RV + IVD+ACHDNVR +L +FEWIE NP++GVVVFA LFC++TLLFVPG++LTIGAGVAFGRA+GFG+G+LWGSVAVL GA++AC+IAFYLGRY+LHEQAQSCAKRYRIL AVN AIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVS+RDYL+GTVG++PGT+AFV+IGASTAGTMNE + M+ AD T C+IRM LIVG IYARRAL
Sbjct: 12 FWGPKAHPKTTPVVKEGPLPRQHREYATAERAAMDEEVGQAVEKDNERVXXXXXXXXXXXXXXXXXSAIVDIACHDNVRTWLETSFEWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEQEAMNSGEADRTECIIRMATLIVGAVAAVLAIVAVTIYARRAL 299
BLAST of mRNA_H-paniculata_contig169.3865.1 vs. uniprot
Match: D7G9F3_ECTSI (Hypothetical UPF0043 protein slr0305 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9F3_ECTSI) HSP 1 Score: 317 bits (813), Expect = 7.700e-97 Identity = 159/212 (75.00%), Postives = 189/212 (89.15%), Query Frame = 2
Query: 1175 ISNEVDSAVESDVRRVKFRAKVMVAVLVLGLLVATIVDLACHDNVRNFLGETFEWIECNPRSGVVVFAGLFCVATLLFVPGIILTIGAGVAFGRAMGFGWGLLWGSVAVLGGALMACIIAFYLGRYILHEQAQSCAKRYRILGAVNKAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSVRDYLIGTVGVIPGTIAFVFIGASTAGTMNE 1810
+ EV AVE D RV R K ++ +V+ L+V+ IVD+ACHDNVR +L +F+WIE NP++GVVVFA LFC++TLLFVPG++LTIGAGVAFGRA+GFG+G+LWGSVAVL GA++AC+IAFYLGRY+LHEQAQSCAKRYRIL AVN AIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVS+RDYL+GTVG++PGT+AFV+IGASTAGTMNE
Sbjct: 45 MDEEVGQAVEKDNERVNQRIKRIMMFVVVALVVSAIVDIACHDNVRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNE 256
BLAST of mRNA_H-paniculata_contig169.3865.1 vs. uniprot
Match: D7FIK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK1_ECTSI) HSP 1 Score: 187 bits (475), Expect = 5.460e-49 Identity = 97/211 (45.97%), Postives = 137/211 (64.93%), Query Frame = 2
Query: 1307 VRNFLGETFEWIECNPRSGVVVFAGLFCVATLLFVPGIILTIGAGVAFGRAMGFGWGLLWGSVAVLGGALMACIIAFYLGRYILHEQAQSCAKRYRILGAVNKAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSVRDYLIGTVGVIPGTIAFVFIGASTAGTMNEGDRMDDEGADTTACLIRMVVLIVGXXXXXXXXXXXXIYARRAL 1939
V + L EW+E NP G + FA ++ T+ F+PG +LT+GAG+ FGRA+G G G+L GS+AVL GA + I+AF LGR++L EQAQ ++++L AVN+AI+ G+K++ILLRLSP+VPFS FN++ G+T V RDY IG VG IPGT+AFVFIG + +G + + ++++V IVG IYA+RAL
Sbjct: 70 VADTLTSFLEWVEDNPGLGALAFALVYVFTTVCFIPGSLLTLGAGLVFGRALGTGLGILVGSLAVLAGATVGSILAFLLGRFVLQEQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFRDYAIGCVGFIPGTVAFVFIGTTASGLLGDDSEEXXXXXXXXXGTVQLIVGIVGGIATVIAVVLISIYAKRAL 280
BLAST of mRNA_H-paniculata_contig169.3865.1 vs. uniprot
Match: A0A7S2Y1P9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1P9_9STRA) HSP 1 Score: 184 bits (466), Expect = 5.500e-48 Identity = 102/247 (41.30%), Postives = 156/247 (63.16%), Query Frame = 2
Query: 1235 KVMVAVLVLGLLVATIVDLACHD--NVRNFLGETFEWIECNPRSGVVVFAGLFCVATLLFVPGIILTIGAGVAFGRAMGFGWGLLWGSVAVLGGALMACIIAFYLGRYILHEQAQSCAKRYRILGAVNKAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSVRDYLIGTVGVIPGTIAFVFIGASTAGT---------MNEGDR-MDDEGADTTACLIRMVVLIVGXXXXXXXXXXXXIYARRAL 1939
K+ + ++++GL++ IVD + NV L + W+E NP GV FA ++ T+ F+PG +LT+GAG+ FGRA+G G G+ GS AV+ GA + IIAF LGRY+L + AQ +++I+ AV+KAIE G+K+ +LLRLSP+VPF+ FN+I GLT +S++DY IG +G+IPGT+A+VFIG+S +G N+ + D E + + + ++V+IVG YA++AL
Sbjct: 26 KLCLGLVLVGLIIYVIVDYSVPSLGNVNIVLSDFLAWVEDNPIEGVFAFACVYMFCTVAFIPGSLLTLGAGLVFGRALGIGRGVALGSFAVILGASIGAIIAFILGRYVLQDTAQVLFNKFKIMRAVDKAIESQGLKLCLLLRLSPVVPFNAFNYIMGLTAISLKDYTIGCLGIIPGTVAYVFIGSSASGIGDMKGNDEEQNDNTKDADGEESSSDNDTVFLIVIIVGAIATVIAVFLISWYAKKAL 272
BLAST of mRNA_H-paniculata_contig169.3865.1 vs. uniprot
Match: A0A7S2MII1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MII1_9STRA) HSP 1 Score: 175 bits (443), Expect = 5.270e-45 Identity = 98/264 (37.12%), Postives = 159/264 (60.23%), Query Frame = 2
Query: 1160 SVSTRISNEVDSAVE-SDVRRVKFRA---KVMVAVLVLGLLVATIVDLACHDNVRNFLGETFEWIECNPRSGVVVFAGLFCVATLLFVPGIILTIGAGVAFGRAMGFGWGLLWGSVAVLGGALMACIIAFYLGRYILHEQAQSCAKRYRILGAVNKAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSVRDYLIGTVGVIPGTIAFVFIGASTAGTMNEGDRMDDEGADTTACLIRMVVLIVGXXXXXXXXXXXXIYARRAL 1939
S ++ + +E SA+ ++ R K +A K+ + +L++G ++ IVD A ++R + WIE NP GV F G++ VAT+LF PG+ILT+GAG F A+G G G++ + AV GA + AF +GRY+L + K+Y I AV+ A++ G+++MILLRLSPL+PF+ N+I G+T VS RD+ I +G++PGT+ +VF+G+S AG++ + G D +A +R++ +++G YAR+ L
Sbjct: 3 SRTSNVEDEESSAMHIAEQAREKRKARLIKIALGLLLVGFIIYVIVDFATSKHLRTAMESFLNWIEDNPTEGVFAFMGVYFVATILFAPGLILTLGAGFVFANALGLGLGVVLATTAVFVGASTGSMAAFLIGRYLLRDWVVGLTKKYAIFEAVDVALKEKGLRIMILLRLSPLIPFNALNYIVGVTSVSFRDFTIAMIGILPGTLLYVFLGSS-AGSLTDSSS----GGDNSA--VRILTIVLGSVFGILGVCVTSYYARKEL 259
BLAST of mRNA_H-paniculata_contig169.3865.1 vs. uniprot
Match: A0A7S2A6Q3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6Q3_TRICV) HSP 1 Score: 174 bits (441), Expect = 1.670e-44 Identity = 89/235 (37.87%), Postives = 145/235 (61.70%), Query Frame = 2
Query: 1235 KVMVAVLVLGLLVATIVDLACHDNVRNFLGETFEWIECNPRSGVVVFAGLFCVATLLFVPGIILTIGAGVAFGRAMGFGWGLLWGSVAVLGGALMACIIAFYLGRYILHEQAQSCAKRYRILGAVNKAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSVRDYLIGTVGVIPGTIAFVFIGASTAGTMNEGDRMDDEGADTTACLIRMVVLIVGXXXXXXXXXXXXIYARRAL 1939
K++V ++++GL+V IVD H V+ + +WIE NP G+ VF ++ VAT+LFVPG +LT+G+G F + G G+G+L ++AV GA + ++AF LGRY+L + ++ K+Y + A++KA+E G+++MILLRLSP++PF+ N+I G+T VS + Y ++PGTI FVF+GAS ++ G+ G DT ++ + ++VG YA++ L
Sbjct: 46 KIIVGLVLVGLIVFIIVDSVTHGFVKGAIEGLLQWIEENPIRGLFVFMAVYFVATVLFVPGSLLTLGSGFVFAESFGLGFGVLLATLAVFVGATLGALVAFILGRYLLRDWVENLTKKYNVFRAIDKALEEKGLRIMILLRLSPIIPFNALNYICGVTSVSFKHYAWANFAILPGTILFVFLGASAGSLVDSGN-----GGDTP--VVTIATIVVGVVFGVIAIALTSRYAKKEL 273
BLAST of mRNA_H-paniculata_contig169.3865.1 vs. uniprot
Match: A0A7S4W131_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W131_9STRA) HSP 1 Score: 170 bits (430), Expect = 4.640e-43 Identity = 83/238 (34.87%), Postives = 144/238 (60.50%), Query Frame = 2
Query: 1226 FRAKVMVAVLVLGLLVATIVDLACHDNVRNFLGETFEWIECNPRSGVVVFAGLFCVATLLFVPGIILTIGAGVAFGRAMGFGWGLLWGSVAVLGGALMACIIAFYLGRYILHEQAQSCAKRYRILGAVNKAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSVRDYLIGTVGVIPGTIAFVFIGASTAGTMNEGDRMDDEGADTTACLIRMVVLIVGXXXXXXXXXXXXIYARRAL 1939
F K+ ++++G ++ I+DLA N + + +WIE NP +GV F G++ +A++ F+PG+ILT+GAG F A+G G G+ +VAV GA +F +GRY+L + K+ I A++ A++ G+++MILLR+SPLVPF+ FN++AG+T +S+RDY IG +G++PGT+ ++ +G+S ++ G D+T +R++ +++G YA++ L
Sbjct: 26 FLFKIGFGLILVGFIIYVIIDLATTKNTMRIVADFLDWIEDNPAAGVFAFIGVYIIASIFFIPGLILTLGAGFVFANALGLGVGIFLATVAVFFGAFFGACASFLIGRYLLRDCVGKLTKKRVIFEAIDAALKDKGLRIMILLRVSPLVPFNVFNYVAGVTSISLRDYAIGMIGILPGTLLYILLGSSAGSLVDSSSS----GNDST---VRIISIVLGIVFAVLGVYATTYYAKKEL 256
BLAST of mRNA_H-paniculata_contig169.3865.1 vs. uniprot
Match: A0A7S4JVV3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JVV3_9STRA) HSP 1 Score: 166 bits (420), Expect = 3.220e-42 Identity = 85/229 (37.12%), Postives = 144/229 (62.88%), Query Frame = 2
Query: 1193 SAVESDVRRVKFRAKVMVAVLVLGLLVATIVDLACHDNVRNFLGETFEWIECNPRSGVVVFAGLFCVATLLFVPGIILTIGAGVAFGRAMGFGWGLLWGSVAVLGGALMACIIAFYLGRYILHEQAQSCAKRYRILGAVNKAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSVRDYLIGTVGVIPGTIAFVFIGASTAGTMNEGDRMDDEGADTTACLIRMVVLIV 1879
S S +RR + + K+++A++++G +V I+D + +++ + WIE NP G +F G++ +AT+LFVPG+ILT+GAG F A G G GL G+++V GA + ++AF + RYIL E A +++ I A+++A+E G+K++ILLRLSP++PF+ N++ G+T VS +DY + ++PGTI +VF+GAS G D + + ++ +V+ IV
Sbjct: 5 SEARSALRRSRIK-KLVLALVLIGFIVFVIIDSTTNGYIKDGIQTFLRWIEENPIEGFFMFMGVYVLATVLFVPGLILTLGAGYVFSNAFGTGLGLFVGTISVFVGASLGSMLAFLISRYILREWAVGLTEKFPIFRAIDQALEEKGLKIIILLRLSPVIPFNALNYVCGVTAVSFKDYSLALFAMLPGTILYVFLGASAQSLATIGSSTDSKALTISTVVVGVVLGIV 232
BLAST of mRNA_H-paniculata_contig169.3865.1 vs. uniprot
Match: A0A7S2PYG7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PYG7_9STRA) HSP 1 Score: 165 bits (418), Expect = 3.800e-42 Identity = 82/216 (37.96%), Postives = 142/216 (65.74%), Query Frame = 2
Query: 1235 KVMVAVLVLGLLVATIVDLACHDNVRNFLGETFEWIECNPRSGVVVFAGLFCVATLLFVPGIILTIGAGVAFGRAMGFGWGLLWGSVAVLGGALMACIIAFYLGRYILHEQAQS-CAKRYRILGAVNKAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSVRDYLIGTVGVIPGTIAFVFIGASTAGTMNEGDRMDDEGADTTACLIRMVVLIV 1879
K++VA +++G++ I+D + E WIE N +GV F G++ +AT+ FVPG +LT+G+G FG A+G G+G++ S+AV GA + I AF LGRY++ + + K+Y ++ A+++A++ NG+K+ +LLRLSP+VPF+ N+IAG+T +S++DY+I +G++PGTI + FIGAS AG + E ++ + + ++ +V+ +
Sbjct: 45 KILVATILIGIVTFVIIDSLTTKYISTGFQEFLTWIESNLVAGVFAFMGVYFIATVCFVPGSLLTLGSGFVFGSAVGVGYGVVLASIAVFVGASLGSIAAFLLGRYLMRDCVRRRLVKKYPVIEAIDEALQNNGLKIFLLLRLSPIVPFNAINYIAGVTGISLKDYVIALIGILPGTILYCFIGAS-AGGLAEAEQEVPQPVTIASIVVGLVLAFI 259
BLAST of mRNA_H-paniculata_contig169.3865.1 vs. uniprot
Match: A0A7S2JYW7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JYW7_9STRA) HSP 1 Score: 164 bits (416), Expect = 1.070e-41 Identity = 87/216 (40.28%), Postives = 137/216 (63.43%), Query Frame = 2
Query: 1235 KVMVAVLVLGLLVATIVDLACHDN-VRNFLGETFEWIECNPRSGVVVFAGLFCVATLLFVPGIILTIGAGVAFGRAMGFGWGLLWGSVAVLGGALMACIIAFYLGRYILHEQAQSCAKRYRILGAVNKAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSVRDYLIGTVGVIPGTIAFVFIGASTAGTMNEGDRMDDEGADTTACLIRMVVLIV 1879
K+++ ++L + IVD A D V + + + +W+E NP GV F G++ VAT+LF+PG ILT+GAG F A G G G+L S+AV GA + +F LGRY+L + + +Y++ GA++ A+ NG K+M LLRLSP++PF+ N+IAG+T VS RD + + ++PGT+ +VF+G+S AG++++ + D D T +I +V IV
Sbjct: 21 KLLIGSILLAFIAYVIVDSASGDGRVTSTVEDFLDWVEDNPAEGVFAFIGVYFVATVLFIPGTILTLGAGFVFSSAFGLGVGVLLASIAVFVGASSGALASFLLGRYLLRDWVMTLTSKYQLFGAIDTALTNNGFKIMSLLRLSPIIPFNALNYIAGVTSVSFRDNALALLFILPGTVMYVFLGSS-AGSLSDSESSGD---DQTTTIITVVFGIV 232 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig169.3865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig169.3865.1 >prot_H-paniculata_contig169.3865.1 ID=prot_H-paniculata_contig169.3865.1|Name=mRNA_H-paniculata_contig169.3865.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=375bp MALAVGSDKDLKAASRRGNEMDLNSRPNSSSLCGWLHFKFCRVKASPPREback to top mRNA from alignment at H-paniculata_contig169:33800..44038+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig169.3865.1 ID=mRNA_H-paniculata_contig169.3865.1|Name=mRNA_H-paniculata_contig169.3865.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10239bp|location=Sequence derived from alignment at H-paniculata_contig169:33800..44038+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig169:33800..44038+ >mRNA_H-paniculata_contig169.3865.1 ID=mRNA_H-paniculata_contig169.3865.1|Name=mRNA_H-paniculata_contig169.3865.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2250bp|location=Sequence derived from alignment at H-paniculata_contig169:33800..44038+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |