mRNA_H-paniculata_contig10590.386.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10590.386.1
Unique NamemRNA_H-paniculata_contig10590.386.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig10590.386.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 97.1 bits (240), Expect = 3.440e-21
Identity = 49/110 (44.55%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    1 VGTKMLHKCKVSKDGKLEKNKCRLVAQGFRQIEGVDYTEKYSPTPATASIRILLTTAAVKDGELRHFDAEHAFLKADIDE-MYIEIPERFQHFPGAVGKLNKAIYGLVQA 327
            +G+K + K K   DG++EK K RLVAQGF Q+EG+DY E ++P   + SIR+LL  AA  D E+   D + AFL  +++E +Y+++P   +    AV +L KA+YGL QA
Sbjct: 1039 IGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQA 1148          
BLAST of mRNA_H-paniculata_contig10590.386.1 vs. uniprot
Match: A0A3S3PZ35_9MAGN (Zinc finger, CCCH-type n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3PZ35_9MAGN)

HSP 1 Score: 95.5 bits (236), Expect = 1.190e-20
Identity = 51/112 (45.54%), Postives = 74/112 (66.07%), Query Frame = 1
Query:    1 VGTKMLHKCKVSKDGKLEKNKCRLVAQGFRQIEGVDYTEKYSPTPATASIRILLTTAAVKDGELRHFDAEHAFLKADIDE-MYIEIPERFQH--FPGAVGKLNKAIYGLVQA 327
            VG K ++K K+  DG LE+ K RLVA+GF Q+EG+D++E +SP    A+IRI+LT A   + ++R  D ++AFL   + E +++E P RF H  +P  V  L KA+YGL QA
Sbjct: 1030 VGCKWVYKTKLRADGSLERLKARLVAKGFNQVEGIDFSETFSPVVKPATIRIVLTIALAHNWDIRQLDVKNAFLNGHLHENVFMEQPPRFAHPVYPHHVCHLKKALYGLRQA 1141          
BLAST of mRNA_H-paniculata_contig10590.386.1 vs. uniprot
Match: A0A438BZM1_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BZM1_VITVI)

HSP 1 Score: 94.4 bits (233), Expect = 3.020e-20
Identity = 52/112 (46.43%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    1 VGTKMLHKCKVSKDGKLEKNKCRLVAQGFRQIEGVDYTEKYSPTPATASIRILLTTAAVKDGELRHFDAEHAFLKADI-DEMYIEIPERFQ--HFPGAVGKLNKAIYGLVQA 327
            +GTK + K K+ ++G + +NK RLVAQGF+QIEG+D+ E ++P     SIRILL  A V   +L   D + AFL   + +E+Y+E P+ FQ   +P  V KL KA+YGL QA
Sbjct:  492 IGTKWIFKNKMDENGVIVRNKARLVAQGFKQIEGIDFDETFAPVARLESIRILLAVACVWKFKLFQMDVKSAFLNGILNEEVYVEQPKGFQDPRYPNHVYKLRKALYGLKQA 603          
BLAST of mRNA_H-paniculata_contig10590.386.1 vs. uniprot
Match: A0A438BYD0_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BYD0_VITVI)

HSP 1 Score: 94.4 bits (233), Expect = 3.060e-20
Identity = 52/112 (46.43%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    1 VGTKMLHKCKVSKDGKLEKNKCRLVAQGFRQIEGVDYTEKYSPTPATASIRILLTTAAVKDGELRHFDAEHAFLKADI-DEMYIEIPERFQ--HFPGAVGKLNKAIYGLVQA 327
            +GTK + K K+ ++G + +NK RLVAQGF+QIEG+D+ E ++P     SIRILL  A V   +L   D + AFL   + +E+Y+E P+ FQ   +P  V KL KA+YGL QA
Sbjct: 1033 IGTKWIFKNKMDENGVIVRNKARLVAQGFKQIEGIDFDETFAPVARLESIRILLAVACVWKFKLFQMDVKSAFLNGILNEEVYVEQPKGFQDPRYPNHVYKLRKALYGLKQA 1144          
BLAST of mRNA_H-paniculata_contig10590.386.1 vs. uniprot
Match: A0A438C843_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438C843_VITVI)

HSP 1 Score: 92.4 bits (228), Expect = 3.220e-20
Identity = 51/112 (45.54%), Postives = 72/112 (64.29%), Query Frame = 1
Query:    1 VGTKMLHKCKVSKDGKLEKNKCRLVAQGFRQIEGVDYTEKYSPTPATASIRILLTTAAVKDGELRHFDAEHAFLKADI-DEMYIEIPERFQ--HFPGAVGKLNKAIYGLVQA 327
            +GTK + K K+ ++G + +NK RLVAQGF QIEG+D+ E ++P     SIRILL  A V   +L   D + AFL   + +E+Y+E P+ FQ   +P  V +L KA+YGL QA
Sbjct:  151 IGTKWIFKNKMDENGVIVRNKARLVAQGFNQIEGIDFDETFAPVARLESIRILLAVACVWKFKLFQMDVKSAFLNGILNEEVYVEQPKGFQDPRYPNHVYRLRKALYGLKQA 262          
BLAST of mRNA_H-paniculata_contig10590.386.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI)

HSP 1 Score: 94.0 bits (232), Expect = 3.840e-20
Identity = 50/111 (45.05%), Postives = 69/111 (62.16%), Query Frame = 1
Query:    1 VGTKMLHKCKVSKDGKLEKNKCRLVAQGFRQIEGVDYTEKYSPTPATASIRILLTTAAVKDGELRHFDAEHAFLKADIDE-MYIEIPERFQHF-PGAVGKLNKAIYGLVQA 327
            +G K ++K K + DG +E+ K RLVAQGF QIEG+DY E +SP     S+R  L  A  K  EL   D  +AFL  D++E +Y+++PE F+      V KL K++YGL QA
Sbjct:  125 IGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQA 235          
BLAST of mRNA_H-paniculata_contig10590.386.1 vs. uniprot
Match: A0A251TUQ9_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TUQ9_HELAN)

HSP 1 Score: 94.0 bits (232), Expect = 4.130e-20
Identity = 50/112 (44.64%), Postives = 71/112 (63.39%), Query Frame = 1
Query:    1 VGTKMLHKCKVSKDGKLEKNKCRLVAQGFRQIEGVDYTEKYSPTPATASIRILLTTAAVKDGELRHFDAEHAFLKADIDE-MYIEIPERF--QHFPGAVGKLNKAIYGLVQA 327
            VG+K L + K   DG +E++K RLVAQGF Q  G+DY+  +SP    +++RI+L+ A + D  L   D  +AFL   ++E +Y+E P  F   +FP  V KLNKA+YGL QA
Sbjct:  912 VGSKWLFRTKYHSDGSVERHKARLVAQGFSQFPGIDYSHTFSPVVKASTVRIILSLAILNDWRLHQLDVNNAFLHGHLNECVYMEQPPGFINPNFPNHVCKLNKALYGLKQA 1023          
BLAST of mRNA_H-paniculata_contig10590.386.1 vs. uniprot
Match: Q5KQE8_ORYSJ (Putative polyprotein n=3 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q5KQE8_ORYSJ)

HSP 1 Score: 94.0 bits (232), Expect = 4.160e-20
Identity = 52/112 (46.43%), Postives = 74/112 (66.07%), Query Frame = 1
Query:    1 VGTKMLHKCKVSKDGKLEKNKCRLVAQGFRQIEGVDYTEKYSPTPATASIRILLTTAAVKDGELRHFDAEHAFLKADIDE-MYIEIPERFQH--FPGAVGKLNKAIYGLVQA 327
            +GTK + K K+ +DG + +NK RLVAQGF Q+EG+D+ E ++P     +IRILL  AA K  +L   D + AFL   I+E +Y++ P  F++  FP  V KL+KA+YGL QA
Sbjct: 1331 IGTKWVFKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLDKALYGLKQA 1442          
BLAST of mRNA_H-paniculata_contig10590.386.1 vs. uniprot
Match: A0A2N9GB87_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GB87_FAGSY)

HSP 1 Score: 94.0 bits (232), Expect = 4.180e-20
Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 1
Query:    1 VGTKMLHKCKVSKDGKLEKNKCRLVAQGFRQIEGVDYTEKYSPTPATASIRILLTTAAVKDGELRHFDAEHAFLKADIDE-MYIEIPERF--QHFPGAVGKLNKAIYGLVQA 327
            VG K ++K K+  DG LE+ K RLVA+GF Q++GVD++E +SP    ASIR+ LT AAVK  E+R  D ++AFL   + + +Y++ P  +    FP  V +L++A+YGL QA
Sbjct: 1042 VGCKWVYKAKLKPDGSLERLKARLVAKGFSQVDGVDFSETFSPVIKPASIRLALTIAAVKGWEIRQLDVKNAFLHGYLSQPVYMQQPPGYVDSQFPTHVCQLSRALYGLKQA 1153          
BLAST of mRNA_H-paniculata_contig10590.386.1 vs. uniprot
Match: A0A438JEY1_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JEY1_VITVI)

HSP 1 Score: 89.4 bits (220), Expect = 5.000e-20
Identity = 50/112 (44.64%), Postives = 71/112 (63.39%), Query Frame = 1
Query:    1 VGTKMLHKCKVSKDGKLEKNKCRLVAQGFRQIEGVDYTEKYSPTPATASIRILLTTAAVKDGELRHFDAEHAFLKADI-DEMYIEIPERFQ--HFPGAVGKLNKAIYGLVQA 327
            +GTK + K K+ ++G + +NK RLVAQGF QIEG+D+ E ++P     SIRILL  A V   +L   D + AFL   + +E+Y+E P+  Q   +P  V +L KA+YGL QA
Sbjct:   64 IGTKWIFKNKMDENGVIVRNKARLVAQGFNQIEGIDFDETFAPVARLESIRILLAIACVWKFKLFQMDVKSAFLNGILNEEVYVEQPKGVQDPRYPNHVYRLRKALYGLKQA 175          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10590.386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C2WN23_AMAMK3.440e-2144.55Integrase catalytic domain-containing protein (Fra... [more]
A0A3S3PZ35_9MAGN1.190e-2045.54Zinc finger, CCCH-type n=1 Tax=Cinnamomum micranth... [more]
A0A438BZM1_VITVI3.020e-2046.43Retrovirus-related Pol polyprotein from transposon... [more]
A0A438BYD0_VITVI3.060e-2046.43Retrovirus-related Pol polyprotein from transposon... [more]
A0A438C843_VITVI3.220e-2045.54Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GNV2_VITVI3.840e-2045.05Retrovirus-related Pol polyprotein from transposon... [more]
A0A251TUQ9_HELAN4.130e-2044.64Putative zinc finger, CCHC-type n=1 Tax=Helianthus... [more]
Q5KQE8_ORYSJ4.160e-2046.43Putative polyprotein n=3 Tax=Oryza sativa subsp. j... [more]
A0A2N9GB87_FAGSY4.180e-2045.54Integrase catalytic domain-containing protein n=1 ... [more]
A0A438JEY1_VITVI5.000e-2044.64Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10590contigH-paniculata_contig10590:2940..3266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score87.0
Seed ortholog evalue5.5e-15
Seed eggNOG ortholog15368.BRADI1G58725.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs37V5Q@33090,3GFFK@35493,3IKJW@38820,3M7B5@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size327
Cds size315
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928761.9420745-UTR-H-paniculata_contig10590:2939..29511622928761.9420745-UTR-H-paniculata_contig10590:2939..2951Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10590 2940..2951 +
1691480610.0956256-UTR-H-paniculata_contig10590:2939..29511691480610.0956256-UTR-H-paniculata_contig10590:2939..2951Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10590 2940..2951 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928761.9537141-CDS-H-paniculata_contig10590:2951..32661622928761.9537141-CDS-H-paniculata_contig10590:2951..3266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10590 2952..3266 +
1691480610.1078281-CDS-H-paniculata_contig10590:2951..32661691480610.1078281-CDS-H-paniculata_contig10590:2951..3266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10590 2952..3266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10590.386.1prot_H-paniculata_contig10590.386.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10590 2952..3266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10590.386.1

>prot_H-paniculata_contig10590.386.1 ID=prot_H-paniculata_contig10590.386.1|Name=mRNA_H-paniculata_contig10590.386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MLHKCKVSKDGKLEKNKCRLVAQGFRQIEGVDYTEKYSPTPATASIRILL
TTAAVKDGELRHFDAEHAFLKADIDEMYIEIPERFQHFPGAVGKLNKAIY
GLVQA
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mRNA from alignment at H-paniculata_contig10590:2940..3266+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10590.386.1 ID=mRNA_H-paniculata_contig10590.386.1|Name=mRNA_H-paniculata_contig10590.386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=327bp|location=Sequence derived from alignment at H-paniculata_contig10590:2940..3266+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGGAACAAAAATGCTTCACAAATGCAAGGTCAGCAAGGACGGCAAGCT GGAGAAGAACAAATGTAGACTTGTCGCCCAGGGCTTCCGGCAGATCGAAG GGGTGGACTACACCGAGAAGTACTCACCTACGCCGGCGACCGCGTCAATT CGGATACTCTTGACGACCGCAGCGGTGAAGGACGGAGAGCTGCGACATTT TGACGCCGAACACGCATTTCTGAAGGCGGACATTGACGAGATGTATATCG AGATCCCGGAAAGGTTCCAACATTTCCCGGGAGCAGTGGGTAAGCTGAAC AAGGCAATCTACGGGCTCGTTCAGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig10590:2940..3266+

>mRNA_H-paniculata_contig10590.386.1 ID=mRNA_H-paniculata_contig10590.386.1|Name=mRNA_H-paniculata_contig10590.386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig10590:2940..3266+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTCACAAATGCAAGGTCAGCAAGGACGGCAAGCTGGAGAAGAACAA
ATGTAGACTTGTCGCCCAGGGCTTCCGGCAGATCGAAGGGGTGGACTACA
CCGAGAAGTACTCACCTACGCCGGCGACCGCGTCAATTCGGATACTCTTG
ACGACCGCAGCGGTGAAGGACGGAGAGCTGCGACATTTTGACGCCGAACA
CGCATTTCTGAAGGCGGACATTGACGAGATGTATATCGAGATCCCGGAAA
GGTTCCAACATTTCCCGGGAGCAGTGGGTAAGCTGAACAAGGCAATCTAC
GGGCTCGTTCAGGCGATGCTTCACAAATGCAAGGTCAGCAAGGACGGCAA
GCTGGAGAAGAACAAATGTAGACTTGTCGCCCAGGGCTTCCGGCAGATCG
AAGGGGTGGACTACACCGAGAAGTACTCACCTACGCCGGCGACCGCGTCA
ATTCGGATACTCTTGACGACCGCAGCGGTGAAGGACGGAGAGCTGCGACA
TTTTGACGCCGAACACGCATTTCTGAAGGCGGACATTGACGAGATGTATA
TCGAGATCCCGGAAAGGTTCCAACATTTCCCGGGAGCAGTGGGTAAGCTG
AACAAGGCAATCTACGGGCTCGTTCAGGCG
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