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Homology
BLAST of mRNA_H-paniculata_contig1689.3855.1 vs. uniprot
Match: D7FN49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN49_ECTSI) HSP 1 Score: 125 bits (314), Expect = 5.510e-29 Identity = 71/141 (50.35%), Postives = 90/141 (63.83%), Query Frame = 2
Query: 2939 LSPGKFARRMSEELGLPPTFMQPIARSISRQLLDSERVLNRWA-ERTAGPVTESVRRIDIDVRFRSIIYRDHLQWDVNCLSNSAELFARCTVADLALPQEMEPAIAFTIQQQLVDHRVEAARPDGSMRTLQTKATLSPHLS 3358
LSP +F+RR ELG+ +F+QPIA+SI +QL++ R WA E T P E+++ + IDVRFRS+I+RD LQWDVNC NS E FAR TVADL LPQEMEP IA T QQ+ R+ A + Q K P +S
Sbjct: 39 LSPLEFSRRTCAELGIGVSFVQPIAQSIGQQLIEYGRKNPMWAVEGTIAPAGENIQTVIIDVRFRSVIFRDRLQWDVNCPYNSPEQFARITVADLNLPQEMEPIIALTTHQQVSRFRMAAPSSTTNNEDAQFKDVEGPCVS 179
BLAST of mRNA_H-paniculata_contig1689.3855.1 vs. uniprot
Match: A0A835YTF3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTF3_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 7.200e-15 Identity = 68/212 (32.08%), Postives = 100/212 (47.17%), Query Frame = 2
Query: 2939 LSPGKFARRMSEELGLPPTFMQPIARSISRQLLDSERVLNRWAERTAG----PVTESVRRIDIDVRFRSIIYRDHLQWDVNCLSNSAELFARCTVADLALPQEMEPAIAFTIQQQLVDHR-----------VEAA---------------------RPDGS--MRTLQTKATLSP--------------HLSHVQPVDQYEFNTRDWRDHRP 3418
LSP FA + +L LP P+AR+I Q++ ++ L W+ + P E++ I++++R +++YRD +WD+N NS E FA TVADLALPQ MEPAIA +++QL ++R V+ A RP GS + L+T LSP +S + P DQ E + WR RP
Sbjct: 530 LSPEAFAAATAADLALPRKLEAPLARAIRAQVVTAQATLPVWSGSSGAAAMYPAGEALVPIELELRLGAVLYRDKFEWDMNEPLNSPEAFAARTVADLALPQPMEPAIALALREQLANYRQLTRSARAVRLVDEAIVAPAXXXXXXXXXXXVKAEQRPPGSPPAKRLRTLPPLSPGHRIRSAADGDSGARISLLTPRDQMELRSGAWRALRP 741
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 127.9 |
| Seed ortholog evalue | 6.5e-27 |
| Seed eggNOG ortholog | 2880.D7FN49 |
| KEGG ko | ko:K09530,ko:K11648,ko:K12662 |
| KEGG Pathway | ko03040,ko04141,ko04714,ko05225,map03040,map04141,map04714,map05225 |
| KEGG Module | M00354 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006333,GO:0006337,GO:0006338,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016043,GO:0019219,GO:0019222,GO:0022411,GO:0031323,GO:0031326,GO:0031498,GO:0032984,GO:0032986,GO:0033554,GO:0034641,GO:0034728,GO:0043044,GO:0043170,GO:0043933,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:1901360,GO:1903506,GO:2000112,GO:2001141 |
| EggNOG free text desc. | chromatin disassembly |
| EggNOG OGs | KOG1649@1,KOG1649@2759 |
| Ec32 ortholog description | SNF5 |
| Ec32 ortholog | Ec-06_008390.1 |
| COG Functional cat. | K |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko01009,ko03021,ko03036,ko03041,ko03110,ko04131 |
| Exons | 3 |
| Model size | 3948 |
| Cds size | 723 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1689.3855.1 >prot_H-paniculata_contig1689.3855.1 ID=prot_H-paniculata_contig1689.3855.1|Name=mRNA_H-paniculata_contig1689.3855.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=241bp
MKPLLCNQQELSTHVVVLCDCIAFLPVNVGCLSCLVFCNFVERCDLPQRN IVQIVRCKIQYRIIPRSDRFLLQLSPGKFARRMSEELGLPPTFMQPIARS ISRQLLDSERVLNRWAERTAGPVTESVRRIDIDVRFRSIIYRDHLQWDVN CLSNSAELFARCTVADLALPQEMEPAIAFTIQQQLVDHRVEAARPDGSMR TLQTKATLSPHLSHVQPVDQYEFNTRDWRDHRPLARNDNS* back to topmRNA from alignment at H-paniculata_contig1689:10520..16334+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1689.3855.1 ID=mRNA_H-paniculata_contig1689.3855.1|Name=mRNA_H-paniculata_contig1689.3855.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5815bp|location=Sequence derived from alignment at H-paniculata_contig1689:10520..16334+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CAAACCTGTGCTCATTTTTCATTTTGACACGATCCTCCTATATACTTGTA
TACATCTCCCAACATGGACAGTGAAGAAAAATGCGTTTATGCTGCAACAA
AGGGAGCGAACATGTGGGATCTGAAGCGAGAGTTGCTGATACCTATCACA
ATCGATGTACAAGTCCAGGGTTTACGCGTGCTCGACACGCTTTTGTGGGA
TGTGGCGGGGCAACAACAGGTTTGTGCCCGTAACTTCTAAAAAGAGTACA
TTCAATAGTGGCGGATTCCTCTTTACTGGAGTGTCACATCTTTGGGGTTT
TTGAGCTTGAGACCAGTACCCGGATTCAACTACCGTGGTTGGGTCCGTGT
GAAGACCCTGTGCAGCAGCTTTTGACCTGCGACCTCAACAGCTTCCCCCA
TGATTCAGTGCGAAAAGGTTATCAAAGTTGTCAAATTCCCCCTTCGGAGA
TGCGGCGGAACTTCACAATATCACTCACTAGTGTTTGTTTGTACTGTACA
CTAGACGATATAGTTGATCGTGATTCCAAAATCACCACATAATATGTTTT
CACCGAAAAGGGTTCGTGCCTGGTTTGGCTGGAGTTGGGTGTCGAACAAT
ATCTTCGTAGGGCTTGGCAATCCTGCGCCATGACTAGGAAGTAAGAGCAC
CAACTCATAGCTGTAATTCGTTGGCACCCACAGGCGAATAGTTGGTGCGA
AACACAAGATACGACATGTTTTAATTGTTAATAGACAACTTACAGTCGCA
GTACACTACTACTCTACACGCCAAGTGCACATGATATAAAACAGGAAGCC
AGCGTCCTGGTATGACATTATGCGATATGTCTGAAATTTTTACTCGAACT
GGTGTTGCTGTCGAATGCGAGTGATTACCTGCCTGGGATTGTTCTGTACC
GAATTCAGTATGTTGCCGTAGTTTACAGGGTAAAACACCCCACCACACCA
CACCCTAAATACCATACCCGGTGGGTTTTTTTTTCCAATTTCCTAAATAA
AATCAGCTACCGAGGGGATACAGAGTATATTACCCCTGGTAAGACCGTAT
TATGACGCATGTTATCACTCTCCCTGATTAAAGCGTGACATTCATTATTA
CCCTACACTGACAGCACCGGGGCACGTAAAACACGGTGCAGTACTACCGT
ACAGCACGGAGAAAGGACATAGAAGGCAACCCCCAGGTAACGGACGATGC
ACAGAGGACTGCCACCGGCGAGAGCGGAGCAGTTCAGGGCGTTGTAAACT
CCGCGACTCACGGACCGGCTATCGCCCTCCCTCCCCCTACTTGTGCGTTG
GTATGTATTGTAAACAGAATCGCATGTTTCCCATCACCCGCCCGTGTTAT
CATATCACCTACTGTCTGTCTATGGGGAGTGATAACATCCAAAATCGTAA
AGACATCCGTATCACCGGGCATCCCCCAGATAATACCCCCCGCGCCCCCC
CACCCCCGGTGATAATTTTTTTCTGTCTATGGGGGGTGGTAACACCCGAA
ATCGTACAGACACTCTTATCACCAGGGATCCCCCAGATTATACCCCTACC
CCCGGCGATAAATTTTTCGGTCCCAAAATGTTGTCACGGGGGATCTGTAA
ACTACGGTACTTGTGTCGGCAAAGACACAATGTGCGCAGACAATACACAG
TCATTACCCTACACATTCGAATGTGAATGTCGATATCTTCGTTCTAGAGT
CCAGTTTGCTAAAGTAATCTGTAGCACTGGGGTTACGAAACGACGGTGAC
ACCTATATACCCCGCCCAAGTTTTAAGTGCCTACGTTCCCTACCGAATTG
ATATCCGCAGCTGAGCAGCGAATGCCTTCGGTCGTTATCTTAAATTGTAC
TCTAAAACAAACAGTCGGGCAGTAGCATCGATTTCTCAACTCAAATGATA
TATGCAACAGATGTACCGATATCCATGGACAGTTGACGATGATATCTATC
CATCCTACGCAAGTGCAAGGCGTCCACGTTTCCGGAGAAGGTGTCTCTGC
AGCTAAGGGACGAGGTGGTTTCGGCCTCAAAGTATAATTTCACGCTCACA
GCAGTCAATTTTTCACCGACGCTGTTCAGAATCGACGTCTCGACTACACG
TGCAAAGTTGTAGTTTCATGCTACCAACCCTTGTGTGGGGGAACTTTCAA
TTGTTACCCGCACATGACCTGTTCATGAAATTTGTGCGCAATCGTTGTAG
TGTGCTGACGATACGAGTGTTGTAAAACTTAGGTATGTACAGTATCTGCA
GATATGTCAACTCCCACGACCCTTGACCGTGTTTTATCTACTGGCGGAAA
GAACAACGAAACGGTCGTCTGTCGAAAACGAAGATTTGAAATTGGTCGTA
GAGACCTGTCCCTCATCACAGAGTTTCTTCGTTTTCTAAGAGAACGGTTT
CATCCGCGACATTTTGAAAGTTCCAAACGATTTTTGAAGAAAGTCGGCAG
AACAAAAAATGCTGCCTCATTTTCTCTTCAAAAGCAAGAAAAAAATTATG
ATTGAAACGCATATTGACAAGGTGGTACGTTGCCGAACGGTGACAGAAAA
TGAAAAATGAAAGAGCGATGCATACAGCATAGTAATACCGGTTGGTCATG
GCCATAGCTCTTCCCCAGCAGTACAGGCAACAGCAAAAAAACGGCACGTT
TTGTGTTCCAACTTGACACGAATTGCTGGACTTCGGTATATCCTCCAATA
CCGACGGTATTTCCATCAAATGAAGCCCCTTTTGTGCAACCAGCAAGAGT
TATCGACGCATGTAGTGGTTCTCTGTGATTGTATTGCTTTTCTCCCTGTA
AATGTTGGTTGTCTCAGTTGCCTTGTGTTTTGCAACTTCGTTGAACGCTG
TGATCTGCCCCAAAGAAACATTGTGCAGATTGTACGTTGTAAAATCCAGT
ACAGAATAATTCCTCGCAGCGACCGTTTCCTTTTACAGCTTTCTCCCGGG
AAGTTCGCGAGGCGTATGAGCGAAGAACTCGGACTACCCCCAACTTTCAT
GCAGCCCATTGCACGGTCCATCAGTCGGCAGCTGCTAGACTCCGAGCGGG
TGCTGAATAGATGGGCAGAGAGGACGGCTGGGCCAGTTACAGAAAGCGTT
CGTCGAATCGATATCGATGTTCGCTTCAGATCCATAATTTACCGAGACCA
TTTGCAGTGGGATGTGAACTGCCTGAGCAATAGCGCGGAGTTGTTCGCTC
GCTGCACAGTGGCGGACCTTGCTCTTCCTCAGGTACGTGTCAAAAGAAAG
CAGCGCCAAGCATAACGCTCAATAATTGGTGAAATATTATTCGAAAGTTA
ACACTGTAGGATATGAGTCAATGTCAATATGCACAGGAGAAGTAGGGAAA
ATAGATTTCCCAATGGCGCGGGGAACGACCGCTAAAGATTCAGTGTACTG
TAGATTCTAGCAATTATAAAATGGTGGGCAACCTCTCTACTGCACACTAA
ACTGTACCAGGTATATAGCGTAGTACCAGATACTACATTGAAAACAGTGT
AACAAAGACGTATTGCATCTTAATTTGCATTTTATGCATAAGAAGGATCT
ACGTTATGTGCAGGATATCGTATTAAAGCTATCATGATAATCGTCGTAGG
TATATGTCTCTCTCTTGATGCACATTCTCAGGATTTTTGAAGTTTCTCCA
CATATCAGAAGTGAGTTTTGAGAATTTTACAAGAAGAATATGCAGGTGAG
GAAGTCACAATTTGAAAGCTGGTGTGCAGAGCTCTCCATCATACCCAACG
ATGGTAGTCGAATCCTTGTTGTACATGAACCAATAAGCAAGACGTGATTT
TCTAGCCTCAGGGCTGCTGCCACTTGACATCGAACCGAGAGGCGTCTGTC
CCGCCACACAGGCGAAACTTGAGTGTCCCCTTGCGAATCCTTGAAAACTT
GTATGATTGCGCTCCCTCGTTGTCGTAATTTTGTAACCGTTTTCTTGGCA
CGTTGGGGCCTTTGTGCTTCTTACATCACATAAATCAGCTGCTGTCTTGA
AGAAAGTGGTGCTATCAAAATTCGACGATGCAGTGGCGAGGTTTAACCGC
AGACATGCCGGTATATTTGTTTCAGTTGTGCCAGAGCTATCTATATATGA
GCTTCAATGGACGCTCTGTGAGTATATGCATCGTCTGCATGTCACTCGAG
TAATGATACTGACTTGCTTCTTTGATGTATTCATATCACATTCGTCTGTG
CTTGTGTAGGAAATGGAGCCTGCAATTGCGTTCACGATACAGCAGCAACT
AGTGGACCATCGCGTGGAGGCGGCAAGACCTGATGGCAGCATGAGGACTT
TACAAACCAAGGCCACCTTGAGCCCTCACCTATCGCACGTCCAGCCTGTC
GATCAGTACGAATTCAATACGAGGGATTGGAGGGATCACAGGTGAATTTA
ATAACTTGAAAATCATCTGTACACACGCCTACTCCATACAGACAAGATCA
CGTATGTACTTCGTATTTACTTTATCGGCATGTCACATTTGTCTTTCTCA
ATGACAAGCACGTTTTAAGTGGCGATCCCTAAGTTTGTGTATTGATGGGA
TCGAGCGAATTTTAATGAATCGTGATGACATCGGGATATACCGAGAAAAT
ATCGGTTAGCTCTCGACAGGGGTGCCCCCCTCATGAGGTTACCCGCTGTG
AACAGTTTTCCCTGCGTAAAGGGCCGCCAGAGGCAGGAGAAATACGCAAT
TTGATTTCTTTATCTTCAATATCAGGTTCAATAATTGTGCATCCGAGGCA
CACAATGAACGAACGTACTAAACGAAGGGTGACATCCGCAACCAAAGACA
AAAAAAGACGGGACCAATATTTGAGCAACCGAGCTACTTGCACCCGCAGG
TCCATGAGACTGTAAGTCTGAGCTTGCTGGGCATATCACACCCCTCTGAC
GGACAGCTGTGGGTTCCATGACACATACATTTGCTATTATTCAACACTCG
AGACCACATGCGGTCAGATACGAACTGCCCAATGCCACAGACGATGGATA
ATGACATATATGTCGTACTCTATAGCCGGTAATGGCAAACGCCGATACAT
CCATGCCCCTAGGCGATTCGATACGATACATCATCTATACCGATAGAGCT
GTACCAGGTAACATCGGTGCCGATACGCAACTCTACCAATCTCCAGTTTC
TTCCAGCTCCAACCCTTGGTGTTCGGTCCCTTTTCTTCAGGCTTCTAGCA
TTAAACTGCTTCACCTTGTGCTGATTTCGCTATTTTCCCTGTTTGACGGT
GCCCGTGTCGCTGTATGTTAACTCATTGCAGACCGCTGGCCAGGAACGAC
AATTCTTGACAGGAGGTACAGCTTCGGGTTAGCCGGGTTAGCCGACTGTG
TGGAGGACGTTGTATGTGTTTAGTACCCGAAGTAGAGTAGAGATCGCAAA
CGTTCTGCTCCAGAGGCATCGGATAATGGAATACAGTCGATTGTACACAC
CAGCAGTGTTTTTTTCCAGACTGGGATGCCTTTTGTTCTCCGCGTATGAT
AATTTCCTAACCAACAAGCCAGCCAGATATTCGTCTCCGTGTCTTGCTTT
ACTGTTACTTTTATAGAATAGCTTGTATTGCAGCGAGTTGGAAGCAAATT
GTGTCTCAAAAGCCGCATTGTACGAAGTACTACAGTATCTTATCTGAGCC
AGTTTTGCTAAGGGGGGAATATTAATTGATTATATTTTTCAACTTCATAC
GGTGCTTTTGTGACCACAAATTTAGGACGTTTTTCACGTAGTGACTTGCG
CGGAATAACACGCCACGTCGGATAACGAAACTATGTATATCCCCCCCTGG
AGCGGAGATAATCGC back to topCoding sequence (CDS) from alignment at H-paniculata_contig1689:10520..16334+ >mRNA_H-paniculata_contig1689.3855.1 ID=mRNA_H-paniculata_contig1689.3855.1|Name=mRNA_H-paniculata_contig1689.3855.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1446bp|location=Sequence derived from alignment at H-paniculata_contig1689:10520..16334+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGAAGCCCCTTTTGTGCAACCAGCAAGAGTTATCGACGCATGTAGTGGT TCTCTGTGATTGTATTGCTTTTCTCCCTGTAAATGTTGGTTGTCTCAGTT GCCTTGTGTTTTGCAACTTCGTTGAACGCTGTGATCTGCCCCAAAGAAAC ATTGTGCAGATTGTACGTTGTAAAATCCAGTACAGAATAATTCCTCGCAG CGACCGTTTCCTTTTACAGCTTTCTCCCGGGAAGTTCGCGAGGCGTATGA GCGAAGAACTCGGACTACCCCCAACTTTCATGCAGCCCATTGCACGGTCC ATCAGTCGGCAGCTGCTAGACTCCGAGCGGGTGCTGAATAGATGGGCAGA GAGGACGGCTGGGCCAGTTACAGAAAGCGTTCGTCGAATCGATATCGATG TTCGCTTCAGATCCATAATTTACCGAGACCATTTGCAGTGGGATGTGAAC TGCCTGAGCAATAGCGCGGAGTTGTTCGCTCGCTGCACAGTGGCGGACCT TGCTCTTCCTCAGATGAAGCCCCTTTTGTGCAACCAGCAAGAGTTATCGA CGCATGTAGTGGTTCTCTGTGATTGTATTGCTTTTCTCCCTGTAAATGTT GGTTGTCTCAGTTGCCTTGTGTTTTGCAACTTCGTTGAACGCTGTGATCT GCCCCAAAGAAACATTGTGCAGATTGTACGTTGTAAAATCCAGTACAGAA TAATTCCTCGCAGCGACCGTTTCCTTTTACAGCTTTCTCCCGGGAAGTTC GCGAGGCGTATGAGCGAAGAACTCGGACTACCCCCAACTTTCATGCAGCC CATTGCACGGTCCATCAGTCGGCAGCTGCTAGACTCCGAGCGGGTGCTGA ATAGATGGGCAGAGAGGACGGCTGGGCCAGTTACAGAAAGCGTTCGTCGA ATCGATATCGATGTTCGCTTCAGATCCATAATTTACCGAGACCATTTGCA GTGGGATGTGAACTGCCTGAGCAATAGCGCGGAGTTGTTCGCTCGCTGCA CAGTGGCGGACCTTGCTCTTCCTCAGGAAATGGAGCCTGCAATTGCGTTC ACGATACAGCAGCAACTAGTGGACCATCGCGTGGAGGCGGCAAGACCTGA TGGCAGCATGAGGACTTTACAAACCAAGGCCACCTTGAGCCCTCACCTAT CGCACGTCCAGCCTGTCGATCAGTACGAATTCAATACGAGGGATTGGAGG GATCACAGGAAATGGAGCCTGCAATTGCGTTCACGATACAGCAGCAACTA GTGGACCATCGCGTGGAGGCGGCAAGACCTGATGGCAGCATGAGGACTTT ACAAACCAAGGCCACCTTGAGCCCTCACCTATCGCACGTCCAGCCTGTCG ATCAGTACGAATTCAATACGAGGGATTGGAGGGATCACAGACCGCTGGCC AGGAACGACAATTCTTGAACCGCTGGCCAGGAACGACAATTCTTGA back to top
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