mRNA_H-paniculata_contig16886.3853.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16886.3853.1
Unique NamemRNA_H-paniculata_contig16886.3853.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16886.3853.1 vs. uniprot
Match: D8LEH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEH6_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.330e-16
Identity = 49/78 (62.82%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:   61 YFRDSRLETTLGLIRSGQMFCEERHITADFVRRADVPRSNEQTTE----SGLVRHALLITDAALYMLEVEMLPRPKPP 282
            +FRD RLE TL LIRSGQ FC+ERHI  DFVRRA          E      L RHALL+TDAALY+LEVEMLP P PP
Sbjct:  272 FFRDPRLEATLALIRSGQAFCQERHIVVDFVRRAKPTTVGLGKAELQPMDDLTRHALLLTDAALYLLEVEMLP-PVPP 348
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BLAST of mRNA_H-paniculata_contig16886.3853.1 vs. uniprot
Match: A0A6H5JCY2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY2_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 3.070e-9
Identity = 41/78 (52.56%), Postives = 45/78 (57.69%), Query Frame = 1 
Query:   61 YFRDSRLETTLGLIRSGQMFCEERHITADFVRRADVPRSNEQTTESGLV---------RHALLITDAALYMLEVEMLP 267
            +FRD RLE TL        FC+ERHI  DFVRRA        T  SG           RHALL+TDAALY+LEVEMLP
Sbjct:  561 FFRDPRLEATLA-------FCQERHIVVDFVRRA-----KPTTVASGKAELQPMDDHTRHALLLTDAALYLLEVEMLP 626
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16886.3853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEH6_ECTSI1.330e-1662.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCY2_9PHAE3.070e-952.56Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16886contigH-paniculata_contig16886:251..4244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size565
Cds size564
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16886.3853.1prot_H-paniculata_contig16886.3853.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16886 251..4244 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929336.2607138-CDS-H-paniculata_contig16886:250..6051622929336.2607138-CDS-H-paniculata_contig16886:250..605Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16886 251..605 -
1691480820.0182097-CDS-H-paniculata_contig16886:250..6051691480820.0182097-CDS-H-paniculata_contig16886:250..605Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16886 251..605 -
1622929336.271056-CDS-H-paniculata_contig16886:2591..27071622929336.271056-CDS-H-paniculata_contig16886:2591..2707Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16886 2592..2707 -
1691480820.0281544-CDS-H-paniculata_contig16886:2591..27071691480820.0281544-CDS-H-paniculata_contig16886:2591..2707Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16886 2592..2707 -
1622929336.2821445-CDS-H-paniculata_contig16886:4151..42441622929336.2821445-CDS-H-paniculata_contig16886:4151..4244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16886 4152..4244 -
1691480820.0373328-CDS-H-paniculata_contig16886:4151..42441691480820.0373328-CDS-H-paniculata_contig16886:4151..4244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16886 4152..4244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16886.3853.1

>prot_H-paniculata_contig16886.3853.1 ID=prot_H-paniculata_contig16886.3853.1|Name=mRNA_H-paniculata_contig16886.3853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=188bp
GGPPRRSTSTSSRGSSVGSRYFRDSRLETTLGLIRSGQMFCEERHITADF
VRRADVPRSNEQTTESGLVRHALLITDAALYMLEVEMLPRPKPPGVATPP
PPPPPPPPSPPPPPPTSQTYSTAPAAGMGDGEARRADSLERLSSHMIDLG
IGHEAAQAVAPAAPWTPTGGLSTGSGQADRPPKSGSGG
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mRNA from alignment at H-paniculata_contig16886:251..4244-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16886.3853.1 ID=mRNA_H-paniculata_contig16886.3853.1|Name=mRNA_H-paniculata_contig16886.3853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3994bp|location=Sequence derived from alignment at H-paniculata_contig16886:251..4244- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGTCCGCCGCGAAGGAGTACTAGTACCAGCAGTCGAGGGAGCAGCGT
CGGATCACGGTATTTCAGAGACTCTCGGTTAGAGACTACGTTGGTGAGGA
TGAAAGAGGGGTTGGAATCAGGGTTGAGGAATTATTTGACCGCGCGATTG
ATGCGTTACGTGCAGTCGGGTTATTTATTTTTCCATGTACTGGAGTGGGA
CATAACTTTTAATAGCTTGCGATATCTCGAGAACCACAACGAGAAAAGTG
ATGCGGGTTTTTCATAGGCCTCGTCTAGGCAAGGGCAAAAAATATTAAAT
CAAGCGACATTATCGGCAAAAAATCGTAAAATCAGTATGTAGAGGTGCAA
AAAATCTACGACAAATAGTGTGAGAATACGAATTTTTACAAAAACTGGAC
ATGAAGAATGAAAAAACCAAAGTCCCCAACCTGACAACATCGGTATAGTG
ACGAGTTGAAAACAGATTTTTCCTGCGGAGTTATGACGTCTCGAAAAAAT
CAATAGAGTATGACTAAGGTTATGCGATACTACGGCGTCCTACGAGTGGG
TTTCTGCTCATTTCTCCACTATTCCAACTCTGTTTTCGGAGAGGCTGTGC
CAAGTAGATAAGATAGACAGACTAGCGTGTAAGCGCTGCAATTGCCACTT
GAACGGCGTCGACAAGGTACAGCAGGGCGACCATAACCCTGCTGCTCGAC
TTGAAGAAAAGGGGATTGCGCCGCGTTTTTTTTTTACACGCAAAACGTAT
TTCTCCGCTTTGGATCCGTGTTGACCCCTGTTGATTGACCAACAGTTGTT
GACTGCCACAGAACATACGCCGAAAATCCTAACGTGATTCACATCAGCTA
CATGAAGAGCAACAAGCCCGCGTTGGTTCCACCATGGGACTATTTTTCCA
TGGCGTGCTCTGTGTTTTTTTGCACTATGCCCAACTTTAACTTTGGACTT
CCTTCCATAGCTTGCCAGGAAGCTGTTGGGTGTTTTTTGTTTTTTTTAAT
ATATATATATATATATATATTCTGCTTGCGTTGCATTGGCATAATCTCTA
GCTTTATCAGAGATATTAGTTTAGTATAGGAGATCAGTCACCTTCTCGGC
CCGTTTTACCATGGATACTGCACTCCGGCTGAAAAATACGTGTAAAAAAA
AACTTTTTCAAATTAGAAAAACGTCTTCTTTGATGTTTAAAAATGATGTG
CCATTACTGTAGTAAGTTAAGTTGCGGGAGTGTAGTCGTGCTTCTTGTAA
CATAGGAATATGACAAGCATTCCAATTTGGCCATCCCAATCAATATACGA
AGTAAGAAATCGACTGTTTTGAGTTTTGACACGTATGGACGTTGGTTGAT
TATCTGTGTACTCAAGAACGCTGTTGGCACAATGAGAGTACTCACGTAAA
ACACGGTCCATTTCTTGGTGAATTCTCGAAACACGATGACTCCAATATCC
TGTTTTTTTCACTCTCTCTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTC
TCTATTTCTCTGTATTTGTGGTGTGTTTTAATGTCAGGGTTTGATACGGT
CGGGACAGATGTTTTGCGAGGAGCGCCATATCACGGCAGACTTCGTGAGG
CGAGCAGACGTTCCGAGGTCGAATGAGCAAACGACGGAGTCTGGGCTTGT
AAGGTGAGAAAATATATTTTGAAGGTGGAAGCGCGGGGGGTGGGCTGAAT
GGCGGGTTAGGGGGGAGAGGGGGTGAGTGACAGAACACGAGGAATACCGT
TAAATCAAGAAACGTTTTGAGTGTGAGATTATCAATCCTTGAAGAGTTGA
GCCCTTGCGAGCCATGGCTAAAAGCTTTTTTCGCTACAATTGGTTGACCT
ATGAAGAGCTAGTCTTTTTTTTCACACGATTGGCAAATAAATGTTCACGC
ACGACCAATCTCGAACCGGAAAAAAAAACGAAGTACATTTTACTAATTGG
TTGCAAAAGAAGGTTTTGTACAAACTCAGGATATTAATTAATTAACCCAT
GCAAGAGTCATCATGGCGCTACCCTTCTGAGCCGACCTGGGGCGCGCATA
GCACCCGTTTTTTCACTTGATTTGAGCTTTTCCAACGCACATCATGCCTG
GAGGTTGCGGGCTATGGTTAGGATAACCGTTAGTTTCGGCCTTCGTTCTG
CTCGCGTCGGTGCGCCCCAAAACGTGGATCATAAAAACTTGATTTTTTTT
TTGTTTATTAGCGATTTTTTTTCACCAGTTCGCTAAACAGGCCTCTGATG
ACATGATCATGTGAGGAAGGCATGTGTGATGCCCTATTACGTGAAAAGCC
TTTGTATAAATATCATCATCGTTTATGGACTAAATAATAATCCAGGGGTT
AATGTACGGAAAAATAGCCATGCAAATCGGGCCAGGAAACACCAAAGCAC
TCCTTGACCTTTTCTAAAAAAGGGGAGCATGAAGGTCCGTCCCATTGATA
ACGAAGTTTCATTTTTTTTTTTTTTCGCCAGCAACTGTGTCTCGTGTCGC
TCAGGCATTTCGAACGAAAGGTTGGAAATATTCACCCCCCGGACATTTAC
GAATAATTGGCGTATTCGCCACGAAAAGTTACGAAGTATTCGCCTGAGTT
TCAGGATGAGCGGACATTTGGAATAAAGTACTCACCCCTGTCCATTAGAT
TTACGAGTATTATTACCAGTCGTGGATGCTCCGGGGCACATAGAATACAC
GAGCTCATTCTGAAAATCAGGCGAATATATGTATACTTTTCGTGGCAAAT
ACGCCAAATACTCGAATTTGTCTTGGGCGTGAAAAAAAAGATGTTGCAAA
GGTTGTAAAGTCTGGATCGTGCAGCGTTGCAAGCTCTCTTACTTTGCAGT
GTTGTTTTCAGCCTTGATTAAGGGCATTATCCAAATGTTTGATACTTGAC
GCACGCTTCACCTGTTGTAGTTTTTCGTCTGTCGTGTTACATGGCGTAGA
CTTGCATTTTGTTTGGGGCCTTGTTGGTTGATTCTTATGGAGCCGATAGA
AGACCTTTTGAGGTTTTGATCCTTTATTGGTTATGCTATTTAGTAGGTGC
GAAGTGTCGAGAAACATGACGTGTGGTATGGTCGGCATTTCGGTGTATTC
ACGGATGTGTGTATTAGTATAATACAGTGTCGTCAGGGTACGATATTCGT
TATCTATGTAGTACAGTACAATACAGTCAGGCACACACTAGGGTGCACTC
AGTCACTGCAAGACAGTCAATTATTTTATCATGAAGCATATACAGTACAG
TATCGTTCGTTTTCAAACAAGACATTTAGTTAGTTATGCAGGTTGTATGT
ATGAATCAAATGAGGCTGAAAAAAAAAAAGCAGTAGATGCTGCTGCTGCT
GCTGCTGTTGCTACTGCTACTGCTGCTTTTGGGCTTCACCTTTTGGATGT
GACCTGCCGACCTCTCCCTCTGGCAGCAGAAACGAACGATGGGTACATGC
CGTGTCGCGTCTTGGTGGCTACTGCGTTGCCCTTCATTCCATTGGGTCCT
ATTTAGTCGATGGATCCTGCAAAGCGTCACACCAAAGCTTTACTTCACGA
GAGCAAACTCTAACCCTAATCCACCGTCATCTCGAAAAATCCAAACAAAT
TCCAAATTCCAAACGAACACACTCACGCACGCACGACAGGCACGCTCTGC
TCATCACGGACGCTGCGCTGTACATGCTGGAGGTAGAGATGTTGCCGCGA
CCCAAGCCACCCGGCGTAGCAACGCCACCGCCACCACCACCACCACCGCC
CCCTTCTCCACCACCGCCACCTCCAACCTCACAAACATATTCCACCGCCC
CCGCCGCGGGGATGGGGGACGGCGAAGCGCGGCGAGCCGACAGCTTGGAA
CGCCTGAGCTCTCACATGATAGATCTCGGCATCGGCCATGAGGCAGCACA
AGCAGTAGCACCAGCGGCGCCGTGGACGCCAACTGGTGGATTGTCTACAG
GGTCCGGACAGGCAGATCGACCGCCAAAGTCGGGATCGGGCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig16886:251..4244-

>mRNA_H-paniculata_contig16886.3853.1 ID=mRNA_H-paniculata_contig16886.3853.1|Name=mRNA_H-paniculata_contig16886.3853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at H-paniculata_contig16886:251..4244- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGTCCGCCGCGAAGGAGTACTAGTACCAGCAGTCGAGGGAGCAGCGT
CGGATCACGGTATTTCAGAGACTCTCGGTTAGAGACTACGTTGGGGGGTC
CGCCGCGAAGGAGTACTAGTACCAGCAGTCGAGGGAGCAGCGTCGGATCA
CGGTATTTCAGAGACTCTCGGTTAGAGACTACGTTGGGTTTGATACGGTC
GGGACAGATGTTTTGCGAGGAGCGCCATATCACGGCAGACTTCGTGAGGC
GAGCAGACGTTCCGAGGTCGAATGAGCAAACGACGGAGTCTGGGCTTGTA
AGGGTTTGATACGGTCGGGACAGATGTTTTGCGAGGAGCGCCATATCACG
GCAGACTTCGTGAGGCGAGCAGACGTTCCGAGGTCGAATGAGCAAACGAC
GGAGTCTGGGCTTGTAAGGCACGCTCTGCTCATCACGGACGCTGCGCTGT
ACATGCTGGAGGTAGAGATGTTGCCGCGACCCAAGCCACCCGGCGTAGCA
ACGCCACCGCCACCACCACCACCACCGCCCCCTTCTCCACCACCGCCACC
TCCAACCTCACAAACATATTCCACCGCCCCCGCCGCGGGGATGGGGGACG
GCGAAGCGCGGCGAGCCGACAGCTTGGAACGCCTGAGCTCTCACATGATA
GATCTCGGCATCGGCCATGAGGCAGCACAAGCAGTAGCACCAGCGGCGCC
GTGGACGCCAACTGGTGGATTGTCTACAGGGTCCGGACAGGCAGATCGAC
CGCCAAAGTCGGGATCGGGCGGGGCACGCTCTGCTCATCACGGACGCTGC
GCTGTACATGCTGGAGGTAGAGATGTTGCCGCGACCCAAGCCACCCGGCG
TAGCAACGCCACCGCCACCACCACCACCACCGCCCCCTTCTCCACCACCG
CCACCTCCAACCTCACAAACATATTCCACCGCCCCCGCCGCGGGGATGGG
GGACGGCGAAGCGCGGCGAGCCGACAGCTTGGAACGCCTGAGCTCTCACA
TGATAGATCTCGGCATCGGCCATGAGGCAGCACAAGCAGTAGCACCAGCG
GCGCCGTGGACGCCAACTGGTGGATTGTCTACAGGGTCCGGACAGGCAGA
TCGACCGCCAAAGTCGGGATCGGGCGGG
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