mRNA_H-paniculata_contig16879.3849.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig16879.3849.1 vs. uniprot
Match: A0A6H5KR73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR73_9PHAE) HSP 1 Score: 135 bits (339), Expect = 1.780e-30 Identity = 131/423 (30.97%), Postives = 176/423 (41.61%), Query Frame = 1
Query: 118 TSTGADDANANAGDEVGIVRRVLATVAAPA---VWMLVSVPDWFSDAVFQVKSTDGSDKRGL----VLVHDPPASLEFACNLLAPWISTPLPTTEASSVSSSFM--WLRRIARMACRLDSPFPGRVVSRPCYSSAIPRQQKGQDPAAASSSSWVAFGMQKTLGLLGFGRGXXXXXXXXXXXXXXXXXXXTAKAGGSFPASILGSSYSTSGCWCEPGGEGPCTIRAPPGRDPCLFIDVAR-SKRWGHPKKRG---AEYVDASSGLHVSTYLVPLPTGLMDVMGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSERVGTAVGRMWRAWSAAAVDVLFAGGGSDDGEGGIFLASVVVPVYLTRLVIGIALLWLARPLSESRVFHHVLGALLGGGVAAVA 1347
T+ DA ++AG + GI R LA VA+P ML +P WFSDAVF+V GS + L VLV + P LE AC+L+AP + P A+SV+++ M ++ + R C D+PFPG+VVSRPC R A S WV+ +A AGG C C G GPCTIRA PGR+PCL ++V +KR G G AE V+++S + + TY +P S R +A G+ A + A +D L A + G S+ VPVY L+ G+ALL +A+PLSESR FH++L ALLGG V A A
Sbjct: 258 TAGSTQDAASSAGSDAGIGWRALAVVASPVHHLFGMLGGMPGWFSDAVFEVNQKGGSAYKDLSQRLVLVENRPRLLELACSLVAPSLH---PQPPAASVTAAGMPAFVPGLVRKLCSSDAPFPGKVVSRPC------RVATEAKATAQQPSGWVS--------------------------TMAPAWVSSAAAGGGDAXXXXXXXXXXXVCECA--GRGPCTIRASPGREPCLHVEVGDVNKRGGRSGGGGGFSAESVESTSAVRLRTYSLPTTAA-----------------------------------------------------------GAASPRASSAEGQESAA-ATAVLDALVALHAAAVRLG--MPPSIAVPVYAAMLLAGVALLLVAQPLSESRAFHYLLSALLGGVVGAAA 581
BLAST of mRNA_H-paniculata_contig16879.3849.1 vs. uniprot
Match: D8LRC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC3_ECTSI) HSP 1 Score: 134 bits (337), Expect = 1.860e-30 Identity = 132/420 (31.43%), Postives = 176/420 (41.90%), Query Frame = 1
Query: 136 DANANAGDEVGIVRRVLATVAAPA---VWMLVSVPDWFSDAVFQVKSTDGSD----KRGLVLVHDPPASLEFACNLLAPWISTPLPTTEASSVSSSFM--WLRRIARMACRLDSPFPGRVVSRPCYSSAIPRQQKGQDPAAASSSSWVAFGMQKTLGLLGFGRGXXXXXXXXXXXXXXXXXXXTAKAGGSFPASILGSSYSTSGCWCEPGGEGPCTIRAPPGRDPCLFIDVAR-SKRWGHPKKR------GAEYVDASSGLHVSTYLVPLPTGLMDVMGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSERVGTAVGRMWRAWSAAAVDVLFAGGGSDDGEGGIFLASVVVPVYLTRLVIGIALLWLARPLSESRVFHHVLGALLGGGVAAVA 1347
DA ++AG + GI + LA V AP ML +P WFSDAVF+V GS + LVLV + P LE AC+L+AP + P A++ +++ M ++ + R C D+PFPG+VVSRPC R +A S WV+ Q + ++ AGG S + C C G GPCTIRA PGR+PCL ++V SKR G AE V+++S + + TY L G S R +A GR A +A + D L A S G SV VPVY L+ G+ALL +A+PLSESR FH++L ALLGG V A A
Sbjct: 73 DAASSAGSDAGIGWQALAVVTAPVSHLFGMLGGMPGWFSDAVFEVNQKGGSAYNDLSQRLVLVENRPRLLELACSLVAPPLHPQPPAAPATAAAAAGMPAFVPGLVRKLCSSDAPFPGKVVSRPC------RVATEAKASAQQPSGWVSTMAQAWV---------------------------SSAAGGGDAISAIXXXXXXXVCECA--GRGPCTIRASPGREPCLHVEVGDVSKRGGRSXXXXXXXXFSAESVESTSAVRLRTY------SLATTAAGAA-----------------------------------------------------SPRASSADGRESAAATAVS-DALVALHASAVRLG--LPPSVAVPVYAAMLLTGVALLLVAQPLSESRAFHYLLSALLGGVVGAAA 395 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16879.3849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16879.3849.1 >prot_H-paniculata_contig16879.3849.1 ID=prot_H-paniculata_contig16879.3849.1|Name=mRNA_H-paniculata_contig16879.3849.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=449bp MPFSLLQKEAAEDKTPAAALLATAERLHVEDPTERSASSTSTGADDANANback to top mRNA from alignment at H-paniculata_contig16879:1917..3734+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig16879.3849.1 ID=mRNA_H-paniculata_contig16879.3849.1|Name=mRNA_H-paniculata_contig16879.3849.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1818bp|location=Sequence derived from alignment at H-paniculata_contig16879:1917..3734+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig16879:1917..3734+ >mRNA_H-paniculata_contig16879.3849.1 ID=mRNA_H-paniculata_contig16879.3849.1|Name=mRNA_H-paniculata_contig16879.3849.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2694bp|location=Sequence derived from alignment at H-paniculata_contig16879:1917..3734+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |