mRNA_H-paniculata_contig16874.3848.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16874.3848.1
Unique NamemRNA_H-paniculata_contig16874.3848.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig16874.3848.1 vs. uniprot
Match: D7G669_ECTSI (Rhodanese domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G669_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 4.760e-44
Identity = 80/113 (70.80%), Postives = 91/113 (80.53%), Query Frame = 1
Query:    1 DAGRLPTAYHLDPSSMENPEDMAETVMSVFEPLRGRVHVCLVGSGDGHVRARGFLARSADGKESDRSDGGGGDLGSLKCARDDYSHVNTCALFFVKRGFPYVSVLEGGFAAAH 339
            DAGR PTAYHLDPS+MENPE+MAE +M VFEPLR R HVCL+GSGDGH+RARG      +G +       GG +GS + ARDDYS+VNTCALFFVKRGFPYVSVLEGG+AAAH
Sbjct:  736 DAGRFPTAYHLDPSAMENPEEMAEKIMPVFEPLRKRAHVCLIGSGDGHLRARGLAG--GNGHQV------GGGIGSQRAARDDYSYVNTCALFFVKRGFPYVSVLEGGYAAAH 840          
BLAST of mRNA_H-paniculata_contig16874.3848.1 vs. uniprot
Match: K8YQB7_NANGC (Tbc1 domain family member 23-like protein (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YQB7_NANGC)

HSP 1 Score: 80.9 bits (198), Expect = 1.510e-15
Identity = 46/118 (38.98%), Postives = 70/118 (59.32%), Query Frame = 1
Query:    7 GRLPTAYHLDPSSMENPEDMAETVMSVFEPLRGRVHVCLVGSGDGHVRARGFLARSADGKESDRSDGGGGDLGSLK-------CARDDYSHVNTCALFFVKRGFPYVSVLEGGFAAAH 339
            GR PTAYH+DPS +++PE++   +++  EP +G  H+ L+G+G     + G LA +       +  GG G   + +         R D  H++T ALF +K+GFPYVS+L+GGFAA H
Sbjct:  128 GRFPTAYHVDPSRLDDPEEITR-LLATLEPFKGSRHLLLMGTG----ASGGGLAPAVP-----KEGGGKGATPAQRFKEHMALAERQDMGHLHTAALFLLKQGFPYVSLLQGGFAAIH 235          
BLAST of mRNA_H-paniculata_contig16874.3848.1 vs. uniprot
Match: W7U2B4_9STRA (Tbc1 domain family member 23 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2B4_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.860e-15
Identity = 46/118 (38.98%), Postives = 70/118 (59.32%), Query Frame = 1
Query:    7 GRLPTAYHLDPSSMENPEDMAETVMSVFEPLRGRVHVCLVGSGDGHVRARGFLARSADGKESDRSDGGGGDLGSLK-------CARDDYSHVNTCALFFVKRGFPYVSVLEGGFAAAH 339
            GR PTAYH+DPS +++PE++   +++  EP +G  H+ L+G+G     + G LA +       +  GG G   + +         R D  H++T ALF +K+GFPYVS+L+GGFAA H
Sbjct:  622 GRFPTAYHVDPSRLDDPEEITR-LLATLEPFKGSRHLLLMGTG----ASGGGLAPAVP-----KEGGGKGATPAQRFKEHMALAERQDMGHLHTAALFLLKQGFPYVSLLQGGFAAIH 729          
BLAST of mRNA_H-paniculata_contig16874.3848.1 vs. uniprot
Match: B8C1V7_THAPS (Rhodanese domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1V7_THAPS)

HSP 1 Score: 80.5 bits (197), Expect = 2.580e-15
Identity = 42/111 (37.84%), Postives = 64/111 (57.66%), Query Frame = 1
Query:    7 GRLPTAYHLDPSSMENPEDMAETVMSVFEPLRGRVHVCLVGSGDGHVRARGFLARSADGKESDRSDGGGGDLGSLKCARDDYSHVNTCALFFVKRGFPYVSVLEGGFAAAH 339
            GR PTA ++ P  +++P+++ + ++ +FE LRG VH+C++G G     A      +A+                 K   +D S  + CALFF+K+GFP+VSVL GGFAAAH
Sbjct: 1054 GRFPTAVNMSPQKLQDPDEV-QKLLDMFEALRGAVHICIMGEGFASFPALYDHPLTAE---------------EEKLLDEDVSRTSNCALFFLKKGFPFVSVLRGGFAAAH 1148          
BLAST of mRNA_H-paniculata_contig16874.3848.1 vs. uniprot
Match: A0A7S1ZR35_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZR35_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.430e-15
Identity = 43/111 (38.74%), Postives = 61/111 (54.95%), Query Frame = 1
Query:    7 GRLPTAYHLDPSSMENPEDMAETVMSVFEPLRGRVHVCLVGSGDGHVRARGFLARSADGKESDRSDGGGGDLGSLKCARDDYSHVNTCALFFVKRGFPYVSVLEGGFAAAH 339
            GR PT+  L P +M +P D  +  + +FE LRG VH+C++G G     A   L    +                +  A DD +  + CALFF+K+GFP+VS+L+GGFAAAH
Sbjct:  329 GRFPTSISLSPEAMMDP-DKVQQQLDMFESLRGAVHICVMGEGFSKFPALYGLKLKDE---------------EMAHAEDDEARTSMCALFFIKKGFPFVSILDGGFAAAH 423          
BLAST of mRNA_H-paniculata_contig16874.3848.1 vs. uniprot
Match: A0A7S4SBJ3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SBJ3_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.490e-15
Identity = 43/111 (38.74%), Postives = 61/111 (54.95%), Query Frame = 1
Query:    7 GRLPTAYHLDPSSMENPEDMAETVMSVFEPLRGRVHVCLVGSGDGHVRARGFLARSADGKESDRSDGGGGDLGSLKCARDDYSHVNTCALFFVKRGFPYVSVLEGGFAAAH 339
            GR PT+  L P +M +P D  +  + +FE LRG VH+C++G G     A   L    +                +  A DD +  + CALFF+K+GFP+VS+L+GGFAAAH
Sbjct: 1051 GRFPTSISLSPEAMMDP-DKVQQQLDMFESLRGAVHICVMGEGFSKFPALYGLKLKDE---------------EIAHAEDDEARTSMCALFFIKKGFPFVSILDGGFAAAH 1145          
BLAST of mRNA_H-paniculata_contig16874.3848.1 vs. uniprot
Match: A0A7S0GEQ1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GEQ1_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.660e-15
Identity = 43/112 (38.39%), Postives = 64/112 (57.14%), Query Frame = 1
Query:    7 GRLPTAYHLDPSSMENPEDMAETVMSVFEPLRGRVHVCLVGSGDGHVRAR-GFLARSADGKESDRSDGGGGDLGSLKCARDDYSHVNTCALFFVKRGFPYVSVLEGGFAAAH 339
            GR PTA  + P S+  P+ + +  M +FE LRG VH+C++G G   +++  G +   AD                 + A +D S    CALFF+K+GFP+VS+++GGFAAAH
Sbjct:  289 GRFPTAVVVCPESLLEPDSIQKD-MDLFESLRGAVHICIMGEGLSSIQSLYGHVLSDAD----------------KEIAMEDESRTGLCALFFIKKGFPFVSIIDGGFAAAH 383          
BLAST of mRNA_H-paniculata_contig16874.3848.1 vs. uniprot
Match: A0A7S2PP44_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PP44_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.730e-15
Identity = 42/111 (37.84%), Postives = 62/111 (55.86%), Query Frame = 1
Query:    7 GRLPTAYHLDPSSMENPEDMAETVMSVFEPLRGRVHVCLVGSGDGHVRARGFLARSADGKESDRSDGGGGDLGSLKCARDDYSHVNTCALFFVKRGFPYVSVLEGGFAAAH 339
            GR PTA H+ P  M    D+ +  M +FE +RG +H+C++G G   +     +  +   KE                A DD+++ N CALF +K+GFP+VS+L+GGFAAAH
Sbjct:  841 GRFPTAVHI-PVQMFLDPDLIKDSMEMFESIRGTIHICILGDGIESIPELYDVPLNDKAKE---------------VAMDDHANTNLCALFMIKKGFPFVSILDGGFAAAH 935          
BLAST of mRNA_H-paniculata_contig16874.3848.1 vs. uniprot
Match: A0A4D9DAX1_9STRA (Rhodanese domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAX1_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 6.530e-15
Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 1
Query:    7 GRLPTAYHLDPSSMENPEDMAETVMSVFEPLRGRVHVCLVGSGDGHVRARGFLARSADGKESDRSDGGGGDLGSLK-------CARDDYSHVNTCALFFVKRGFPYVSVLEGGFAAAH 339
            GR PTAYH+DP  +++PE++   +++  EP +G  H+ L+G+G     + G LA +       +  GG G   + +         R D  H++T ALF +K+GFPYVS+L+GGFAA H
Sbjct: 1053 GRFPTAYHVDPGRLDDPEEITR-LLATLEPFKGSRHLLLMGTG----ASGGGLAPAVP-----KEGGGKGATPAQRFKEHMALAERQDMGHLHTAALFLLKQGFPYVSLLQGGFAAIH 1160          
BLAST of mRNA_H-paniculata_contig16874.3848.1 vs. uniprot
Match: A0A5D6XZM4_9STRA (Rhodanese domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZM4_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.040e-14
Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    7 GRLPTAYHLDPSSMENPEDMAETVMSVFEPLRGRVHVCLVGSGDGHVRARGFLARSADGKESDRSDGGGGDLGSLKCARDDY--------SHVNTCALFFVKRGFPYVSVLEGGFAAAH 339
            G++PTA+H DP ++ +   + E V++   PL+G+VH+C++G G G +          + +E  R  G  G  GS    RDD         + VN+  LF  K+GFP+VSVL+GG+AAAH
Sbjct:  568 GQIPTAFHFDPDAVTD-RQVLEHVLATLNPLKGKVHLCVMGHGYGRI--------VGEIREQQRRVGPAG-AGSPFAQRDDLFEAYATNLTRVNSALLFLTKQGFPFVSVLDGGYAAAH 676          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16874.3848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G669_ECTSI4.760e-4470.80Rhodanese domain-containing protein n=2 Tax=Ectoca... [more]
K8YQB7_NANGC1.510e-1538.98Tbc1 domain family member 23-like protein (Fragmen... [more]
W7U2B4_9STRA1.860e-1538.98Tbc1 domain family member 23 n=1 Tax=Nannochlorops... [more]
B8C1V7_THAPS2.580e-1537.84Rhodanese domain-containing protein n=1 Tax=Thalas... [more]
A0A7S1ZR35_9STRA3.430e-1538.74Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4SBJ3_9STRA3.490e-1538.74Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S0GEQ1_9STRA4.660e-1538.39Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2PP44_9STRA4.730e-1537.84Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A4D9DAX1_9STRA6.530e-1538.14Rhodanese domain-containing protein n=1 Tax=Nannoc... [more]
A0A5D6XZM4_9STRA3.040e-1437.82Rhodanese domain-containing protein n=1 Tax=Pythiu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16874contigH-paniculata_contig16874:1758..3555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.1
Seed ortholog evalue3.8e-38
Seed eggNOG ortholog2880.D7G669
Hectar predicted targeting categoryother localisation
EggNOG free text desc.embryonic brain development
EggNOG OGsKOG3636@1,KOG3636@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size339
Cds size339
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16874.3848.1prot_H-paniculata_contig16874.3848.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16874 1758..3555 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929335.4659445-CDS-H-paniculata_contig16874:1757..18291622929335.4659445-CDS-H-paniculata_contig16874:1757..1829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16874 1758..1829 +
1691480819.7193627-CDS-H-paniculata_contig16874:1757..18291691480819.7193627-CDS-H-paniculata_contig16874:1757..1829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16874 1758..1829 +
1622929335.4800453-CDS-H-paniculata_contig16874:2719..29681622929335.4800453-CDS-H-paniculata_contig16874:2719..2968Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16874 2720..2968 +
1691480819.7304711-CDS-H-paniculata_contig16874:2719..29681691480819.7304711-CDS-H-paniculata_contig16874:2719..2968Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16874 2720..2968 +
1622929335.4954093-CDS-H-paniculata_contig16874:3537..35551622929335.4954093-CDS-H-paniculata_contig16874:3537..3555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16874 3538..3555 +
1691480819.738262-CDS-H-paniculata_contig16874:3537..35551691480819.738262-CDS-H-paniculata_contig16874:3537..3555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16874 3538..3555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16874.3848.1

>prot_H-paniculata_contig16874.3848.1 ID=prot_H-paniculata_contig16874.3848.1|Name=mRNA_H-paniculata_contig16874.3848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
DAGRLPTAYHLDPSSMENPEDMAETVMSVFEPLRGRVHVCLVGSGDGHVR
ARGFLARSADGKESDRSDGGGGDLGSLKCARDDYSHVNTCALFFVKRGFP
YVSVLEGGFAAAH
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mRNA from alignment at H-paniculata_contig16874:1758..3555+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16874.3848.1 ID=mRNA_H-paniculata_contig16874.3848.1|Name=mRNA_H-paniculata_contig16874.3848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1798bp|location=Sequence derived from alignment at H-paniculata_contig16874:1758..3555+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGCTGGTCGATTGCCGACCGCTTACCACTTGGACCCTTCTTCCATGGA AAACCCCGAGGATATGGCTGAGGTGAGAGTGGTATCATTAGCAGGTGGCC CTATGCCATCACCGAAGAGTGTAGTCAGGATCCATCTGATTCTGCGTTAG CTAGACGTGGGTACGAGTTTCGACGTCCAAGAGTATACCTCTTTTTTTAT TTCTGTATAGTTGAAAAAATTGTTCGAAACGACAATGGGGACCATAGTGG CAACGTAAGATTGGGTATACCATTCTTGAATCGTGTAACTTCATTTAATA GGAAGTGTTATGCTGAAAGTAATCCTCTTTTCACCTGAAGTGCCTTTGTG TATAATATGTGTAACAGCACCTTGTTCATGCTGGTTGCAACTTATTACCT CAGTCATTCCTTCTCTTTTTCTTTCGCCATCATATTTGACCATCGCTTTA GGGGGTCAAGACCCGCTCGTCGCAGAGTGGCAGAAGACCGTATCAAGCAT ACATACCCGTGATGGACTCCCCTCTTTTTGATCGAAACGTCCAATCCCGT CCCCCATGTAACCCTAGGCAGGGACGTAATCAATGCGAGCTGATGACTCG CGTTTACTAGGAATTCCTCGTTCAAGATCAATAATTGCAATGATCTATCC CTATCACGATGCACGTTCAACAGATTACCCGGGCCTCTCGACCCAGGAAC AATGAAACTCGTTGCATGCATCAGTGAGGTAGAAAGGGTAGGAGAAATAG TTTCGAGTCACATTTGGCAACGTAGGAAGGAGTGATTGGTCATTATGCAT CGGAAATCGCTCTGATCGGAACAGAGCTCCGTCATCCTGAGGACGTGTGG TCAATGGTCCAACACCTAGGACATGAAAAATATGAGTCCTCCCCTGCTTC CCCCTCCATACATCCCTCCATACATGCATGTGTACAACTTGTGATGATGT GGTTGTTATTAGACAGTAATGTCGGTCTTCGAGCCTCTTCGAGGCCGTGT GCACGTGTGTCTCGTGGGAAGCGGGGACGGCCACGTGCGCGCGAGGGGCT TCTTGGCTCGATCGGCGGATGGCAAGGAGAGCGATAGAAGTGATGGGGGA GGAGGGGACCTGGGAAGTCTCAAATGCGCGAGGGATGACTACAGTCACGT GAATACCTGTGCGCTGTTCTTTGTGAAGCGCGGTTTTCCGTACGTATCCG TGCTTGAAGGGGTAAGTTGTGTTTACATCTGAGATTTATGCGCGCGCGTG TGTGTGTGTGTGTATTTTTCAAGCGTCCAAGTTTGAAAATTATTTTCGTT GTTTCGTTGACGGTTTTTCCAATTTTTGCGTTTGTCGTGGTTAAGCTTGT GTTTGTTACAATTTTGCTGCGAAGGTCTAGGCCTGCAGGTTTCATCGTAT TTGTGTGATGGTATGAGCTCGGGGCTGCGGTTTATGAATCAGGCGGAGTG TCAGGGTTGGGATTAGCTCCATTTGTCACCGCAAGTTATCACTGATGGTA TTGTTTGTTCCTTAGCCAGAAACGGTGAAGACATTTTTGCTGAAGCAGAG CTACCGTAGAGGAACGAGCGAGGCCGAGCGTGTGTATTTAGCTACGGCAA GAAATGCGTGGCGCTTTTTTTCGCTTTGCAAATCACCTTTTGATGAAAAA GACGAGTGTGGCTCATTTTGTTCCGTTGTCCGTTATCGAAAAATTAATCG TCCACCACCTTTCTCTAAACCGTAGCCCTGCTCGACCCCCGTCGAACCCC TTGGCTTTCACCATCATCTCCTCGATCCAGGGCTTCGCCGCCGCACAC
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Coding sequence (CDS) from alignment at H-paniculata_contig16874:1758..3555+

>mRNA_H-paniculata_contig16874.3848.1 ID=mRNA_H-paniculata_contig16874.3848.1|Name=mRNA_H-paniculata_contig16874.3848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig16874:1758..3555+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGCTGGTCGATTGCCGACCGCTTACCACTTGGACCCTTCTTCCATGGA
AAACCCCGAGGATATGGCTGAGGATGCTGGTCGATTGCCGACCGCTTACC
ACTTGGACCCTTCTTCCATGGAAAACCCCGAGGATATGGCTGAGACAGTA
ATGTCGGTCTTCGAGCCTCTTCGAGGCCGTGTGCACGTGTGTCTCGTGGG
AAGCGGGGACGGCCACGTGCGCGCGAGGGGCTTCTTGGCTCGATCGGCGG
ATGGCAAGGAGAGCGATAGAAGTGATGGGGGAGGAGGGGACCTGGGAAGT
CTCAAATGCGCGAGGGATGACTACAGTCACGTGAATACCTGTGCGCTGTT
CTTTGTGAAGCGCGGTTTTCCGTACGTATCCGTGCTTGAAGGGACAGTAA
TGTCGGTCTTCGAGCCTCTTCGAGGCCGTGTGCACGTGTGTCTCGTGGGA
AGCGGGGACGGCCACGTGCGCGCGAGGGGCTTCTTGGCTCGATCGGCGGA
TGGCAAGGAGAGCGATAGAAGTGATGGGGGAGGAGGGGACCTGGGAAGTC
TCAAATGCGCGAGGGATGACTACAGTCACGTGAATACCTGTGCGCTGTTC
TTTGTGAAGCGCGGTTTTCCGTACGTATCCGTGCTTGAAGGGGGCTTCGC
CGCCGCACACGGCTTCGCCGCCGCACAC
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