mRNA_H-paniculata_contig16874.3848.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig16874.3848.1 vs. uniprot
Match: D7G669_ECTSI (Rhodanese domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G669_ECTSI) HSP 1 Score: 162 bits (410), Expect = 4.760e-44 Identity = 80/113 (70.80%), Postives = 91/113 (80.53%), Query Frame = 1
Query: 1 DAGRLPTAYHLDPSSMENPEDMAETVMSVFEPLRGRVHVCLVGSGDGHVRARGFLARSADGKESDRSDGGGGDLGSLKCARDDYSHVNTCALFFVKRGFPYVSVLEGGFAAAH 339
DAGR PTAYHLDPS+MENPE+MAE +M VFEPLR R HVCL+GSGDGH+RARG +G + GG +GS + ARDDYS+VNTCALFFVKRGFPYVSVLEGG+AAAH
Sbjct: 736 DAGRFPTAYHLDPSAMENPEEMAEKIMPVFEPLRKRAHVCLIGSGDGHLRARGLAG--GNGHQV------GGGIGSQRAARDDYSYVNTCALFFVKRGFPYVSVLEGGYAAAH 840
BLAST of mRNA_H-paniculata_contig16874.3848.1 vs. uniprot
Match: K8YQB7_NANGC (Tbc1 domain family member 23-like protein (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YQB7_NANGC) HSP 1 Score: 80.9 bits (198), Expect = 1.510e-15 Identity = 46/118 (38.98%), Postives = 70/118 (59.32%), Query Frame = 1
Query: 7 GRLPTAYHLDPSSMENPEDMAETVMSVFEPLRGRVHVCLVGSGDGHVRARGFLARSADGKESDRSDGGGGDLGSLK-------CARDDYSHVNTCALFFVKRGFPYVSVLEGGFAAAH 339
GR PTAYH+DPS +++PE++ +++ EP +G H+ L+G+G + G LA + + GG G + + R D H++T ALF +K+GFPYVS+L+GGFAA H
Sbjct: 128 GRFPTAYHVDPSRLDDPEEITR-LLATLEPFKGSRHLLLMGTG----ASGGGLAPAVP-----KEGGGKGATPAQRFKEHMALAERQDMGHLHTAALFLLKQGFPYVSLLQGGFAAIH 235
BLAST of mRNA_H-paniculata_contig16874.3848.1 vs. uniprot
Match: W7U2B4_9STRA (Tbc1 domain family member 23 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2B4_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 1.860e-15 Identity = 46/118 (38.98%), Postives = 70/118 (59.32%), Query Frame = 1
Query: 7 GRLPTAYHLDPSSMENPEDMAETVMSVFEPLRGRVHVCLVGSGDGHVRARGFLARSADGKESDRSDGGGGDLGSLK-------CARDDYSHVNTCALFFVKRGFPYVSVLEGGFAAAH 339
GR PTAYH+DPS +++PE++ +++ EP +G H+ L+G+G + G LA + + GG G + + R D H++T ALF +K+GFPYVS+L+GGFAA H
Sbjct: 622 GRFPTAYHVDPSRLDDPEEITR-LLATLEPFKGSRHLLLMGTG----ASGGGLAPAVP-----KEGGGKGATPAQRFKEHMALAERQDMGHLHTAALFLLKQGFPYVSLLQGGFAAIH 729
BLAST of mRNA_H-paniculata_contig16874.3848.1 vs. uniprot
Match: B8C1V7_THAPS (Rhodanese domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1V7_THAPS) HSP 1 Score: 80.5 bits (197), Expect = 2.580e-15 Identity = 42/111 (37.84%), Postives = 64/111 (57.66%), Query Frame = 1
Query: 7 GRLPTAYHLDPSSMENPEDMAETVMSVFEPLRGRVHVCLVGSGDGHVRARGFLARSADGKESDRSDGGGGDLGSLKCARDDYSHVNTCALFFVKRGFPYVSVLEGGFAAAH 339
GR PTA ++ P +++P+++ + ++ +FE LRG VH+C++G G A +A+ K +D S + CALFF+K+GFP+VSVL GGFAAAH
Sbjct: 1054 GRFPTAVNMSPQKLQDPDEV-QKLLDMFEALRGAVHICIMGEGFASFPALYDHPLTAE---------------EEKLLDEDVSRTSNCALFFLKKGFPFVSVLRGGFAAAH 1148
BLAST of mRNA_H-paniculata_contig16874.3848.1 vs. uniprot
Match: A0A7S1ZR35_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZR35_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 3.430e-15 Identity = 43/111 (38.74%), Postives = 61/111 (54.95%), Query Frame = 1
Query: 7 GRLPTAYHLDPSSMENPEDMAETVMSVFEPLRGRVHVCLVGSGDGHVRARGFLARSADGKESDRSDGGGGDLGSLKCARDDYSHVNTCALFFVKRGFPYVSVLEGGFAAAH 339
GR PT+ L P +M +P D + + +FE LRG VH+C++G G A L + + A DD + + CALFF+K+GFP+VS+L+GGFAAAH
Sbjct: 329 GRFPTSISLSPEAMMDP-DKVQQQLDMFESLRGAVHICVMGEGFSKFPALYGLKLKDE---------------EMAHAEDDEARTSMCALFFIKKGFPFVSILDGGFAAAH 423
BLAST of mRNA_H-paniculata_contig16874.3848.1 vs. uniprot
Match: A0A7S4SBJ3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SBJ3_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 3.490e-15 Identity = 43/111 (38.74%), Postives = 61/111 (54.95%), Query Frame = 1
Query: 7 GRLPTAYHLDPSSMENPEDMAETVMSVFEPLRGRVHVCLVGSGDGHVRARGFLARSADGKESDRSDGGGGDLGSLKCARDDYSHVNTCALFFVKRGFPYVSVLEGGFAAAH 339
GR PT+ L P +M +P D + + +FE LRG VH+C++G G A L + + A DD + + CALFF+K+GFP+VS+L+GGFAAAH
Sbjct: 1051 GRFPTSISLSPEAMMDP-DKVQQQLDMFESLRGAVHICVMGEGFSKFPALYGLKLKDE---------------EIAHAEDDEARTSMCALFFIKKGFPFVSILDGGFAAAH 1145
BLAST of mRNA_H-paniculata_contig16874.3848.1 vs. uniprot
Match: A0A7S0GEQ1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GEQ1_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 4.660e-15 Identity = 43/112 (38.39%), Postives = 64/112 (57.14%), Query Frame = 1
Query: 7 GRLPTAYHLDPSSMENPEDMAETVMSVFEPLRGRVHVCLVGSGDGHVRAR-GFLARSADGKESDRSDGGGGDLGSLKCARDDYSHVNTCALFFVKRGFPYVSVLEGGFAAAH 339
GR PTA + P S+ P+ + + M +FE LRG VH+C++G G +++ G + AD + A +D S CALFF+K+GFP+VS+++GGFAAAH
Sbjct: 289 GRFPTAVVVCPESLLEPDSIQKD-MDLFESLRGAVHICIMGEGLSSIQSLYGHVLSDAD----------------KEIAMEDESRTGLCALFFIKKGFPFVSIIDGGFAAAH 383
BLAST of mRNA_H-paniculata_contig16874.3848.1 vs. uniprot
Match: A0A7S2PP44_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PP44_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 4.730e-15 Identity = 42/111 (37.84%), Postives = 62/111 (55.86%), Query Frame = 1
Query: 7 GRLPTAYHLDPSSMENPEDMAETVMSVFEPLRGRVHVCLVGSGDGHVRARGFLARSADGKESDRSDGGGGDLGSLKCARDDYSHVNTCALFFVKRGFPYVSVLEGGFAAAH 339
GR PTA H+ P M D+ + M +FE +RG +H+C++G G + + + KE A DD+++ N CALF +K+GFP+VS+L+GGFAAAH
Sbjct: 841 GRFPTAVHI-PVQMFLDPDLIKDSMEMFESIRGTIHICILGDGIESIPELYDVPLNDKAKE---------------VAMDDHANTNLCALFMIKKGFPFVSILDGGFAAAH 935
BLAST of mRNA_H-paniculata_contig16874.3848.1 vs. uniprot
Match: A0A4D9DAX1_9STRA (Rhodanese domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAX1_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 6.530e-15 Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 1
Query: 7 GRLPTAYHLDPSSMENPEDMAETVMSVFEPLRGRVHVCLVGSGDGHVRARGFLARSADGKESDRSDGGGGDLGSLK-------CARDDYSHVNTCALFFVKRGFPYVSVLEGGFAAAH 339
GR PTAYH+DP +++PE++ +++ EP +G H+ L+G+G + G LA + + GG G + + R D H++T ALF +K+GFPYVS+L+GGFAA H
Sbjct: 1053 GRFPTAYHVDPGRLDDPEEITR-LLATLEPFKGSRHLLLMGTG----ASGGGLAPAVP-----KEGGGKGATPAQRFKEHMALAERQDMGHLHTAALFLLKQGFPYVSLLQGGFAAIH 1160
BLAST of mRNA_H-paniculata_contig16874.3848.1 vs. uniprot
Match: A0A5D6XZM4_9STRA (Rhodanese domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZM4_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 3.040e-14 Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = 1
Query: 7 GRLPTAYHLDPSSMENPEDMAETVMSVFEPLRGRVHVCLVGSGDGHVRARGFLARSADGKESDRSDGGGGDLGSLKCARDDY--------SHVNTCALFFVKRGFPYVSVLEGGFAAAH 339
G++PTA+H DP ++ + + E V++ PL+G+VH+C++G G G + + +E R G G GS RDD + VN+ LF K+GFP+VSVL+GG+AAAH
Sbjct: 568 GQIPTAFHFDPDAVTD-RQVLEHVLATLNPLKGKVHLCVMGHGYGRI--------VGEIREQQRRVGPAG-AGSPFAQRDDLFEAYATNLTRVNSALLFLTKQGFPFVSVLDGGYAAAH 676 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16874.3848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16874.3848.1 >prot_H-paniculata_contig16874.3848.1 ID=prot_H-paniculata_contig16874.3848.1|Name=mRNA_H-paniculata_contig16874.3848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp DAGRLPTAYHLDPSSMENPEDMAETVMSVFEPLRGRVHVCLVGSGDGHVRback to top mRNA from alignment at H-paniculata_contig16874:1758..3555+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig16874.3848.1 ID=mRNA_H-paniculata_contig16874.3848.1|Name=mRNA_H-paniculata_contig16874.3848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1798bp|location=Sequence derived from alignment at H-paniculata_contig16874:1758..3555+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig16874:1758..3555+ >mRNA_H-paniculata_contig16874.3848.1 ID=mRNA_H-paniculata_contig16874.3848.1|Name=mRNA_H-paniculata_contig16874.3848.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig16874:1758..3555+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |