mRNA_H-paniculata_contig1686.3841.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1686.3841.1
Unique NamemRNA_H-paniculata_contig1686.3841.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1686.3841.1 vs. uniprot
Match: A0A507EB34_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507EB34_9FUNG)

HSP 1 Score: 65.1 bits (157), Expect = 1.760e-10
Identity = 32/79 (40.51%), Postives = 49/79 (62.03%), Query Frame = 1
Query:    7 IPAGFYGFLWLTNTNVENARENGWLFSRP--PPTNFFDMWTLFDFSKVDWLAVQSQVGTMVSLALFLLLLVPVRIPTLA 237
            +P  FY  ++     +E+ R+ GWL S P  PP  F++ WT +DFS V+W AV + + T ++LA F +L VP+ +P LA
Sbjct:  535 VPILFYIIVFAGRFALEDVRKAGWLISLPEGPPAAFYEFWTYYDFSAVNWKAVPATIPTQLALAFFGILHVPINVPALA 613          
BLAST of mRNA_H-paniculata_contig1686.3841.1 vs. uniprot
Match: A0A1Y1W970_9FUNG (Uncharacterized protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1W970_9FUNG)

HSP 1 Score: 61.2 bits (147), Expect = 3.950e-9
Identity = 32/80 (40.00%), Postives = 42/80 (52.50%), Query Frame = 1
Query:    1 MMIPAGFYGFLWLTNTNVENARENGWLFSRPPP-TNFFDMWTLFDFSKVDWLAVQSQVGTMVSLALFLLLLVPVRIPTLA 237
            M +P  FYG        ++  RE GW+F  P     F+  +TLFDF   DW  V   V TM+ LA F +L VP+ +P LA
Sbjct:  222 MFVPVVFYGIASALGLPMDLLRETGWVFQMPDAGVPFYHFYTLFDFGNTDWYTVWLTVPTMLGLAFFSILHVPINVPALA 301          
BLAST of mRNA_H-paniculata_contig1686.3841.1 vs. uniprot
Match: A0A2G5BFH6_COERN (Uncharacterized protein n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BFH6_COERN)

HSP 1 Score: 58.9 bits (141), Expect = 2.560e-8
Identity = 31/80 (38.75%), Postives = 44/80 (55.00%), Query Frame = 1
Query:    1 MMIPAGFYGFLWLTNTNVENARENGWLFSRPPP-TNFFDMWTLFDFSKVDWLAVQSQVGTMVSLALFLLLLVPVRIPTLA 237
            M++PA FY    L   ++E  R  GW+F  P     F+  +TLF+F   DW  V   + TM+ LA F +L VP+ +P LA
Sbjct:  106 MIVPAVFYVTTALLGLSMETLRAKGWVFELPDAGVPFYHFYTLFNFGNTDWRVVLKTLPTMLGLAFFSILHVPINVPALA 185          
BLAST of mRNA_H-paniculata_contig1686.3841.1 vs. uniprot
Match: A0A1Y1V8M1_9FUNG (Uncharacterized protein n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1V8M1_9FUNG)

HSP 1 Score: 57.8 bits (138), Expect = 6.630e-8
Identity = 29/85 (34.12%), Postives = 46/85 (54.12%), Query Frame = 1
Query:    1 MMIPAGFYGFLWLTNTNVENARENGWLFSRPPPTN------FFDMWTLFDFSKVDWLAVQSQVGTMVSLALFLLLLVPVRIPTLA 237
            + +P  FY  ++L   ++ N RE GWLF+     +      F+  WT FDF K  W  + S +GT+ +L  F +L VP+ +P L+
Sbjct:  458 LALPIIFYIVVFLGGFDLNNLREQGWLFNLVSDNDNQENVPFYTFWTYFDFRKTQWSVIPSTLGTICALVFFGILHVPINVPALS 542          
BLAST of mRNA_H-paniculata_contig1686.3841.1 vs. uniprot
Match: A0A1Y2BAH0_9FUNG (Uncharacterized protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2BAH0_9FUNG)

HSP 1 Score: 54.3 bits (129), Expect = 1.110e-6
Identity = 26/82 (31.71%), Postives = 41/82 (50.00%), Query Frame = 1
Query:    7 IPAGFYGFLWLTNTNVENARENGWLFSRPPPTN-----FFDMWTLFDFSKVDWLAVQSQVGTMVSLALFLLLLVPVRIPTLA 237
            +P  FY  +W+   N++  RE GWLF+           F+  WT FDF    W  +   + T+ +L  F +L VP+ +P L+
Sbjct:  467 LPVIFYLIVWIGGFNLDELREQGWLFNLISDDGHNDVPFYTFWTYFDFKATQWSVIPYTLSTIFALVFFGILHVPINVPALS 548          
BLAST of mRNA_H-paniculata_contig1686.3841.1 vs. uniprot
Match: A0A4V1IUE6_9FUNG (STAS domain-containing protein (Fragment) n=1 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4V1IUE6_9FUNG)

HSP 1 Score: 53.9 bits (128), Expect = 1.480e-6
Identity = 29/80 (36.25%), Postives = 47/80 (58.75%), Query Frame = 1
Query:    1 MMIPAGFYGFLWLTNTNVENARENGWLFSRPPPTN-FFDMWTLFDFSKVDWLAVQSQVGTMVSLALFLLLLVPVRIPTLA 237
            M +P  FY  +      +E  R++GWLF+ P  T  F++ WT FD + + + A+ +   TM++LA F +L VP+ +P LA
Sbjct:  194 MTVPVLFYLVVLAAGIPLEVLRDHGWLFTVPAETGTFYEFWTWFDLTALRFRAIATCFPTMLALAFFGVLHVPINVPALA 273          
BLAST of mRNA_H-paniculata_contig1686.3841.1 vs. uniprot
Match: A0A1Y2HPE3_9FUNG (Sulfate transporter family-domain-containing protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HPE3_9FUNG)

HSP 1 Score: 53.1 bits (126), Expect = 2.850e-6
Identity = 30/79 (37.97%), Postives = 44/79 (55.70%), Query Frame = 1
Query:    1 MMIPAGFYGFLWLTNTNVENARENGWLFSRPPPTNFFDMWTLFDFSKVDWLAVQSQVGTMVSLALFLLLLVPVRIPTLA 237
            M++P  F+  L+L N ++  ARE GWLF       F+D +       V W  + S + TM+SLA F +L VP+ +P LA
Sbjct:  662 MLVPLVFHLILYLANIDLAVAREFGWLFDLAADKPFYDFYRHMRPGDVAWGLLPSLLPTMLSLAFFSVLHVPINVPALA 740          
BLAST of mRNA_H-paniculata_contig1686.3841.1 vs. uniprot
Match: A0A6A6FDY2_9PEZI (Uncharacterized protein n=1 Tax=Cercospora zeae-maydis SCOH1-5 TaxID=717836 RepID=A0A6A6FDY2_9PEZI)

HSP 1 Score: 50.4 bits (119), Expect = 2.510e-5
Identity = 26/64 (40.62%), Postives = 39/64 (60.94%), Query Frame = 1
Query:   49 NVENARENGWLFSRPPP-TNFFDMWTLFDFSKVDWLAVQSQVGTMVSLALFLLLLVPVRIPTLA 237
            N+E  RE GW+F  P   T F++ ++ + FS VDW AV   + + ++L  F +L VP+ IP LA
Sbjct:  245 NMEKLREAGWVFEGPAADTTFYNFYSYYQFSIVDWKAVVMTIPSQLALCFFGILHVPINIPNLA 308          
BLAST of mRNA_H-paniculata_contig1686.3841.1 vs. uniprot
Match: A0A068SED5_9FUNG (Sulfate transporter family protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068SED5_9FUNG)

HSP 1 Score: 50.4 bits (119), Expect = 2.520e-5
Identity = 28/79 (35.44%), Postives = 44/79 (55.70%), Query Frame = 1
Query:    1 MMIPAGFYGFLWLTNTNVENARENGWLFSR-PPPTNFFDMWTLFDFSKVDWLAVQSQVGTMVSLALFLLLLVPVRIPTL 234
            M++P  FY  L +   +V + R+ GW+F        F+  +T FDF+ V+W AV   +  M++L  F LL VP+ +P L
Sbjct:  409 MVLPIVFYLVLAIAGLDVNDVRDQGWIFPLVQSDLPFWHFYTNFDFTMVNWRAVGHTMPAMLALTFFGLLHVPINVPAL 487          
BLAST of mRNA_H-paniculata_contig1686.3841.1 vs. uniprot
Match: A0A2I0S8Z1_9PEZI (Uncharacterized protein n=1 Tax=Cercospora zeina TaxID=348901 RepID=A0A2I0S8Z1_9PEZI)

HSP 1 Score: 50.4 bits (119), Expect = 2.530e-5
Identity = 26/64 (40.62%), Postives = 39/64 (60.94%), Query Frame = 1
Query:   49 NVENARENGWLFSRPPP-TNFFDMWTLFDFSKVDWLAVQSQVGTMVSLALFLLLLVPVRIPTLA 237
            N+E  RE GW+F  P   T F++ ++ + FS VDW AV   + + ++L  F +L VP+ IP LA
Sbjct:  483 NMEKLREAGWVFEGPAADTTFYNFYSYYQFSIVDWKAVVMTIPSQLALCFFGILHVPINIPNLA 546          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1686.3841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A507EB34_9FUNG1.760e-1040.51Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
A0A1Y1W970_9FUNG3.950e-940.00Uncharacterized protein n=1 Tax=Linderina pennispo... [more]
A0A2G5BFH6_COERN2.560e-838.75Uncharacterized protein n=1 Tax=Coemansia reversa ... [more]
A0A1Y1V8M1_9FUNG6.630e-834.12Uncharacterized protein n=1 Tax=Piromyces finnis T... [more]
A0A1Y2BAH0_9FUNG1.110e-631.71Uncharacterized protein n=1 Tax=Neocallimastix cal... [more]
A0A4V1IUE6_9FUNG1.480e-636.25STAS domain-containing protein (Fragment) n=1 Tax=... [more]
A0A1Y2HPE3_9FUNG2.850e-637.97Sulfate transporter family-domain-containing prote... [more]
A0A6A6FDY2_9PEZI2.510e-540.63Uncharacterized protein n=1 Tax=Cercospora zeae-ma... [more]
A0A068SED5_9FUNG2.520e-535.44Sulfate transporter family protein n=2 Tax=Lichthe... [more]
A0A2I0S8Z1_9PEZI2.530e-540.63Uncharacterized protein n=1 Tax=Cercospora zeina T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1686contigH-paniculata_contig1686:7860..8424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue8.7e-13
Seed eggNOG ortholog112098.XP_008607156.1
KEGG koko:K03321
KEGG TC2.A.53.3
Hectar predicted targeting categorysignal anchor
GOsGO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008272,GO:0008509,GO:0015075,GO:0015103,GO:0015116,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0072348,GO:0098656,GO:0098660,GO:0098661,GO:1901682,GO:1902358
EggNOG free text desc.secondary active sulfate transmembrane transporter activity
EggNOG OGsCOG0659@1,KOG0236@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons2
Model size238
Cds size237
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929334.7346919-CDS-H-paniculata_contig1686:7859..79551622929334.7346919-CDS-H-paniculata_contig1686:7859..7955Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1686 7860..7955 -
1691480819.421541-CDS-H-paniculata_contig1686:7859..79551691480819.421541-CDS-H-paniculata_contig1686:7859..7955Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1686 7860..7955 -
1622929334.7487972-CDS-H-paniculata_contig1686:8283..84241622929334.7487972-CDS-H-paniculata_contig1686:8283..8424Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1686 8284..8424 -
1691480819.4325416-CDS-H-paniculata_contig1686:8283..84241691480819.4325416-CDS-H-paniculata_contig1686:8283..8424Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1686 8284..8424 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1686.3841.1prot_H-paniculata_contig1686.3841.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1686 7860..8424 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1686.3841.1

>prot_H-paniculata_contig1686.3841.1 ID=prot_H-paniculata_contig1686.3841.1|Name=mRNA_H-paniculata_contig1686.3841.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
MMIPAGFYGFLWLTNTNVENARENGWLFSRPPPTNFFDMWTLFDFSKVDW
LAVQSQVGTMVSLALFLLLLVPVRIPTLA
back to top

mRNA from alignment at H-paniculata_contig1686:7860..8424-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1686.3841.1 ID=mRNA_H-paniculata_contig1686.3841.1|Name=mRNA_H-paniculata_contig1686.3841.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=565bp|location=Sequence derived from alignment at H-paniculata_contig1686:7860..8424- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGATACCGGCCGGGTTTTATGGCTTTCTCTGGTTGACTAATACCAA CGTCGAGAATGCTCGGGAGAATGGTTGGCTCTTTTCACGGCCACCACCAA CGAATTTTTTCGATATGTGGACGCTGTTCGACTTCTCCAAGGCAAGAACA AAGCTATCCCACTGATATAGTGGAACGTAAAACTTGAAACGAGCTACGCA ACAAACAGAAACGCGACACGCCGTGCGTGCACCATGTATCGAAGGCACGG CAAACATTGCCTTTGCCTTTTGTTCTGGAAGGAAAGAAATAGGTATTCAT AGTTGCCTCGGCCACCCTGACAATGTTACGCACGCCCACACAATTTAGCA GCTGCAGGAATACTATCTAAAGGGCAGTGCCGCATTGCAGTTTCTACCGA GCTCAGTATACACACAGAGTTCTTATCGCGGCATACTGAAAAAAATCAAT CGCTGGTTTTCACTGACAGGTTGACTGGCTGGCGGTGCAGAGCCAAGTGG GAACGATGGTATCACTGGCTTTGTTCCTCCTTTTGCTCGTGCCCGTTCGC ATTCCCACGCTTGCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1686:7860..8424-

>mRNA_H-paniculata_contig1686.3841.1 ID=mRNA_H-paniculata_contig1686.3841.1|Name=mRNA_H-paniculata_contig1686.3841.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig1686:7860..8424- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGATACCGGCCGGGTTTTATGGCTTTCTCTGGTTGACTAATACCAA
CGTCGAGAATGCTCGGGAGAATGGTTGGCTCTTTTCACGGCCACCACCAA
CGAATTTTTTCGATATGTGGACGCTGTTCGACTTCTCCAAGATGATGATA
CCGGCCGGGTTTTATGGCTTTCTCTGGTTGACTAATACCAACGTCGAGAA
TGCTCGGGAGAATGGTTGGCTCTTTTCACGGCCACCACCAACGAATTTTT
TCGATATGTGGACGCTGTTCGACTTCTCCAAGGTTGACTGGCTGGCGGTG
CAGAGCCAAGTGGGAACGATGGTATCACTGGCTTTGTTCCTCCTTTTGCT
CGTGCCCGTTCGCATTCCCACGCTTGCCGTTGACTGGCTGGCGGTGCAGA
GCCAAGTGGGAACGATGGTATCACTGGCTTTGTTCCTCCTTTTGCTCGTG
CCCGTTCGCATTCCCACGCTTGCC
back to top