mRNA_H-paniculata_contig1059.384.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1059.384.1
Unique NamemRNA_H-paniculata_contig1059.384.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1059.384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1059contigH-paniculata_contig1059:1198..2925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size201
Cds size201
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928761.7546718-CDS-H-paniculata_contig1059:1197..13481622928761.7546718-CDS-H-paniculata_contig1059:1197..1348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1059 1198..1348 -
1691480609.9503515-CDS-H-paniculata_contig1059:1197..13481691480609.9503515-CDS-H-paniculata_contig1059:1197..1348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1059 1198..1348 -
1622928761.764796-CDS-H-paniculata_contig1059:2875..29251622928761.764796-CDS-H-paniculata_contig1059:2875..2925Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1059 2876..2925 -
1691480609.9646587-CDS-H-paniculata_contig1059:2875..29251691480609.9646587-CDS-H-paniculata_contig1059:2875..2925Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1059 2876..2925 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1059.384.1prot_H-paniculata_contig1059.384.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1059 1198..2925 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1059.384.1

>prot_H-paniculata_contig1059.384.1 ID=prot_H-paniculata_contig1059.384.1|Name=mRNA_H-paniculata_contig1059.384.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
MVQYGCIAESDIVPACRTPEALPLFTAKPRTAYNSPSKRLDGERSEPVHR
DPISISWWELFISSQW*
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mRNA from alignment at H-paniculata_contig1059:1198..2925-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1059.384.1 ID=mRNA_H-paniculata_contig1059.384.1|Name=mRNA_H-paniculata_contig1059.384.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1728bp|location=Sequence derived from alignment at H-paniculata_contig1059:1198..2925- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCAATACGGCTGTATCGCGGAATCGGACATCGTACCCGCGTGCAG
GTAAGCACCAGCAACGCGTGCCTGATGCACTACCAACAATATCCAGAATC
ATTTTTCGGAGGGAGTTGAGTAGTTGCGTGCTATAGTTTTCCCTTTATCT
TGGGGCAACTTATACGTGCCCCCCACTCTAAAGGCTACGGTAAGGAAGTG
TTTGAATTATGGGAACTGCGAAAATAAGCCTACAGCGGTCCTGGAGATAG
AAGTTGACCTGAACACGCGAGAGTGGATATAAATAGGGTAGGTGAAAGGA
TTTTGAGCGAAAAATCGCGACTTCGAAAAGAGCGATTGGCCATGGGAAAT
CGCCCTGATAGGAAGAAAGCTTGATCCTGCAAAGACGGGTGGCCAATGGC
TTAGCAACTATGGCATGCAAAACGCGAGTAATACCGCCCCCTCGAGCCTT
CATGCACGCGGTTTCGAAACCGTTGTTTCGCGATTCTTCAATTTCGCTCC
TTTATTTTTGTGCGTTTTGTAGCATCGATTTTGGTTTTAGACTGTTCTTT
GTTCTGCCCTTGACATACTTACTTGTAGGCAACACACCGCAGCTTTGTTC
TCTACCTAGTTTCGTGTTGATCTAATATATGGAGAGTGGGCTGGTTGCCA
AATTTGCGCAAAAGGGCAAATTTTGAAATGATGGAAATGGAGAAGAGGCA
GTGAGAATGACAGAAGGACAGAAAGAAAAAATAAAACGTTAGCTCCAGGC
TCCGAATATGCGGTCAGTTGATGATTGACACTTGGAGCTGACGTCAGTCC
TATCCGATGTGGTGGAGAAGGCGCCTGTCCCGCACCAACCTGTTTATCCA
CACATGATCGATTGGTTTGTCCAGGCACACACTCATTCACTTACCCATTT
TATTCACTTCCTCCCTCCCTCCCTCCGTCATTCACCCATTTCACTTACTC
ACTCTCTCATTCATTCGTCCATTTACTCATTCCCCCATCCATTCACTCAT
TCGCTCCTCTATTTACTCACTCAGGCACTTACTCATTCACTCACTCCCTC
ACGTACGTACCTTCTCACTCATCTTCTTGATTAGAGCTATGTGTAGTTAA
TCACGTAGCTGGTTTCTTACGTACCCGCTGACGTGCTTCCTTACTTATGC
ATTCACTTACTCCCTTGTCCATTCACTCACTCACTGAAAGCATCAACATT
ATTCCGTGCACCAGGCAGCTACCCCCTCGAAATTAGCGGCGTATCGCGTA
CGGCACGGATGTAGAGGCCATCGCATGATACACATAACCCTTCCCCACCT
CAGCAGTATATACTCCCTCTGTTCCGTTAGCTATTTACCGTATATGTCTT
CAGGATGGTGTCCGATTCAAAACGGATTGTTGCATTGGATTCCGTGACGT
TTTTCCCGTTGCGTACATTTTCTATTCTGAATAAATGTTTTGAAAATTGT
GCCGAAAAAAATAATTGTGCTTTTTGACCTTTTCGTCACTCGGGACTGGT
TTTTCGGCTCACTTCAAGTGGTTCAGCAGCATGCTGTTGTCGCCCACTAC
TCTCACAACCTCATTCCTTGGTCCCAGAACCCCGGAAGCGCTACCACTCT
TTACTGCGAAGCCTCGGACTGCCTACAATAGCCCGTCCAAGAGACTTGAC
GGCGAGCGCTCAGAGCCCGTCCACCGGGATCCAATCTCCATCAGCTGGTG
GGAGCTCTTCATCTCGTCGCAGTGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1059:1198..2925-

>mRNA_H-paniculata_contig1059.384.1 ID=mRNA_H-paniculata_contig1059.384.1|Name=mRNA_H-paniculata_contig1059.384.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig1059:1198..2925- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCAATACGGCTGTATCGCGGAATCGGACATCGTACCCGCGTGCAG
ATGGTGCAATACGGCTGTATCGCGGAATCGGACATCGTACCCGCGTGCAG
AACCCCGGAAGCGCTACCACTCTTTACTGCGAAGCCTCGGACTGCCTACA
ATAGCCCGTCCAAGAGACTTGACGGCGAGCGCTCAGAGCCCGTCCACCGG
GATCCAATCTCCATCAGCTGGTGGGAGCTCTTCATCTCGTCGCAGTGGTA
AAACCCCGGAAGCGCTACCACTCTTTACTGCGAAGCCTCGGACTGCCTAC
AATAGCCCGTCCAAGAGACTTGACGGCGAGCGCTCAGAGCCCGTCCACCG
GGATCCAATCTCCATCAGCTGGTGGGAGCTCTTCATCTCGTCGCAGTGGT
AA
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