mRNA_H-paniculata_contig16856.3839.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16856.3839.1
Unique NamemRNA_H-paniculata_contig16856.3839.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16856.3839.1 vs. uniprot
Match: D7G0D7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0D7_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 1.030e-32
Identity = 62/81 (76.54%), Postives = 66/81 (81.48%), Query Frame = 1 
Query:    1 IGNPRTDERIKYVGGIRGSEALHGLVTPGDGDGDPWAVAFCMFPVSVDEVMSVADAEMLMPPKATWFEPKLRSGLIVRLLD 243
            IGNPR DERIKYVGGIRGS  L  LVT    +   WAVAFCMFPVSVD+VM VADA+ LMPPKATWFEPKLRSGL+VR LD
Sbjct:  345 IGNPRADERIKYVGGIRGSNELQRLVTNPVPEEGSWAVAFCMFPVSVDQVMRVADADQLMPPKATWFEPKLRSGLVVRSLD 425
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BLAST of mRNA_H-paniculata_contig16856.3839.1 vs. uniprot
Match: A0A836CBS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBS0_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.810e-31
Identity = 60/81 (74.07%), Postives = 67/81 (82.72%), Query Frame = 1 
Query:    1 IGNPRTDERIKYVGGIRGSEALHGLVTPGDGDGDPWAVAFCMFPVSVDEVMSVADAEMLMPPKATWFEPKLRSGLIVRLLD 243
            IGNPRTDERIK+VGGIRGS  L  L T G    +PWAV F M PVS++EVMSV+DA+MLM PKATWFEPKLRSGL+VRLLD
Sbjct:  344 IGNPRTDERIKFVGGIRGSAELERLTTSGS---EPWAVGFLMHPVSIEEVMSVSDADMLMAPKATWFEPKLRSGLVVRLLD 421
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BLAST of mRNA_H-paniculata_contig16856.3839.1 vs. uniprot
Match: A0A7S2UXJ4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXJ4_9STRA)

HSP 1 Score: 110 bits (275), Expect = 4.290e-29
Identity = 56/81 (69.14%), Postives = 63/81 (77.78%), Query Frame = 1 
Query:    1 IGNPRTDERIKYVGGIRGSEALHGLVTPGDGDGDPWAVAFCMFPVSVDEVMSVADAEMLMPPKATWFEPKLRSGLIVRLLD 243
            IGNPRTDERIKYVGGIRG   L  L +P        AVAF + PVSV+E+M++ADA  LMPPKATWFEPKLRSGLIVR+LD
Sbjct:   83 IGNPRTDERIKYVGGIRGMAELERLTSPS-------AVAFDVHPVSVEEIMAIADASALMPPKATWFEPKLRSGLIVRVLD 156
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BLAST of mRNA_H-paniculata_contig16856.3839.1 vs. uniprot
Match: W7TNQ3_9STRA (Uncharacterized conserved protein UCP033563 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNQ3_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.800e-28
Identity = 59/82 (71.95%), Postives = 66/82 (80.49%), Query Frame = 1 
Query:    1 IGNPRTDERIKYVGGIRGSEALHGLVTPGDGDGDPWAVAFCMFPVSVDEVMSVADAEMLMPPKATWFEPKLRSGLIVRLLDD 246
            IG+PR DER+KYVGG+RG E L  LVT   G+    AVAF M+PVSV+EVM +ADAE LMPPKATWFEPKLRSGLIVRL DD
Sbjct:  365 IGDPREDERMKYVGGVRGLEELERLVT---GERAWGAVAFAMYPVSVEEVMDIADAEALMPPKATWFEPKLRSGLIVRLYDD 443
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BLAST of mRNA_H-paniculata_contig16856.3839.1 vs. uniprot
Match: A0A117M862_9BACT (Uncharacterized protein (Fragment) n=4 Tax=Candidatus Marinimicrobia TaxID=62680 RepID=A0A117M862_9BACT)

HSP 1 Score: 101 bits (251), Expect = 5.260e-25
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:    1 IGNPRTDERIKYVGGIRGSEALHGLVTPGDGDGDPWAVAFCMFPVSVDEVMSVADAEMLMPPKATWFEPKLRSGLIVRLLDD 246
            IG+PRTD+R+ +VGGIRG   L   V  GD      AVAF ++P SV+E+M++ADA  LMPPK+TWFEPKLRSGLI+  LDD
Sbjct:  121 IGDPRTDDRVDFVGGIRGLTELEKRVDSGD-----MAVAFALYPTSVEELMAIADAGKLMPPKSTWFEPKLRSGLIIHTLDD 197
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BLAST of mRNA_H-paniculata_contig16856.3839.1 vs. uniprot
Match: A0A1F4MPA4_9BACT (Uncharacterized protein n=1 Tax=Caldithrix sp. RBG_13_44_9 TaxID=1797576 RepID=A0A1F4MPA4_9BACT)

HSP 1 Score: 97.1 bits (240), Expect = 2.960e-24
Identity = 45/81 (55.56%), Postives = 60/81 (74.07%), Query Frame = 1 
Query:    1 IGNPRTDERIKYVGGIRGSEALHGLVTPGDGDGDPWAVAFCMFPVSVDEVMSVADAEMLMPPKATWFEPKLRSGLIVRLLD 243
            IG+PR D+RI +VGGIRG + L   V  GD     W VAF + P S++E+M++AD+  +MPPK+TWFEPKL+SGL+V LLD
Sbjct:   42 IGDPRKDKRIDFVGGIRGLKELEKRVKSGD-----WKVAFALHPTSIEELMTIADSGKIMPPKSTWFEPKLKSGLVVHLLD 117
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BLAST of mRNA_H-paniculata_contig16856.3839.1 vs. uniprot
Match: A0A2D5AN32_9BACT (Uncharacterized protein n=2 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2D5AN32_9BACT)

HSP 1 Score: 102 bits (255), Expect = 4.790e-24
Identity = 48/82 (58.54%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:    1 IGNPRTDERIKYVGGIRGSEALHGLVTPGDGDGDPWAVAFCMFPVSVDEVMSVADAEMLMPPKATWFEPKLRSGLIVRLLDD 246
            IG+PRTDERI ++GGIRG+E L   V  GD     WAVAF M+P +V +++ +ADA  +MPPK+TWFEPKLRSGL +  LDD
Sbjct:  334 IGDPRTDERIDFIGGIRGTEELEKRVESGD-----WAVAFSMYPTTVQQLIDIADAGEIMPPKSTWFEPKLRSGLFIYTLDD 410
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BLAST of mRNA_H-paniculata_contig16856.3839.1 vs. uniprot
Match: A0A7V6APE4_9BACT (DUF1015 domain-containing protein n=1 Tax=candidate division Zixibacteria bacterium TaxID=2053527 RepID=A0A7V6APE4_9BACT)

HSP 1 Score: 102 bits (255), Expect = 4.970e-24
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 1 
Query:    1 IGNPRTDERIKYVGGIRGSEALHGLVTPGDGDGDPWAVAFCMFPVSVDEVMSVADAEMLMPPKATWFEPKLRSGLIVRLLD 243
            IG+PRTDERI ++GGIRG   L  LV         WAVAF MFP  +D++M++ADA  +MPPK+TWFEPKLRSG++V LLD
Sbjct:  339 IGDPRTDERIDFIGGIRGLAELDKLVKS-----KKWAVAFAMFPTGIDQLMAIADAGKIMPPKSTWFEPKLRSGMVVHLLD 414
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BLAST of mRNA_H-paniculata_contig16856.3839.1 vs. uniprot
Match: A0A369LIG9_9ACTN (DUF1015 domain-containing protein n=3 Tax=Coriobacteriia TaxID=84998 RepID=A0A369LIG9_9ACTN)

HSP 1 Score: 102 bits (255), Expect = 5.520e-24
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:    1 IGNPRTDERIKYVGGIRGSEALHGLVTPGDGDGDPWAVAFCMFPVSVDEVMSVADAEMLMPPKATWFEPKLRSGLIVRLL 240
            IG+PRTD RI++VGGIRG   L   V   D  GD  AVAF MFP S+DE++ VADA  LMPPK+TWFEPKLRSGL V L+
Sbjct:  347 IGDPRTDGRIEFVGGIRGLRELERKVNRIDAHGDGPAVAFAMFPTSIDELLDVADAGRLMPPKSTWFEPKLRSGLFVHLI 426
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BLAST of mRNA_H-paniculata_contig16856.3839.1 vs. uniprot
Match: A0A7R6PM59_9BACT (Uncharacterized protein n=1 Tax=Thermotomaculum hydrothermale TaxID=981385 RepID=A0A7R6PM59_9BACT)

HSP 1 Score: 102 bits (253), Expect = 9.400e-24
Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = 1 
Query:    1 IGNPRTDERIKYVGGIRGSEALHGLVTPGDGDGDPWAVAFCMFPVSVDEVMSVADAEMLMPPKATWFEPKLRSGLIVRLLD 243
            I NPR  ERI +VGGIRG+E L  LV  GD     +AVAF M+P +V+++M++ADA  +MPPK+TWFEPKLRSGLIV LLD
Sbjct:  337 IENPRKSERITFVGGIRGTEELEKLVNSGD-----YAVAFSMYPTTVEQLMNIADAGQVMPPKSTWFEPKLRSGLIVHLLD 412
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16856.3839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0D7_ECTSI1.030e-3276.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBS0_9STRA1.810e-3174.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UXJ4_9STRA4.290e-2969.14Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7TNQ3_9STRA1.800e-2871.95Uncharacterized conserved protein UCP033563 n=3 Ta... [more]
A0A117M862_9BACT5.260e-2559.76Uncharacterized protein (Fragment) n=4 Tax=Candida... [more]
A0A1F4MPA4_9BACT2.960e-2455.56Uncharacterized protein n=1 Tax=Caldithrix sp. RBG... [more]
A0A2D5AN32_9BACT4.790e-2458.54Uncharacterized protein n=2 Tax=Verrucomicrobiales... [more]
A0A7V6APE4_9BACT4.970e-2459.26DUF1015 domain-containing protein n=1 Tax=candidat... [more]
A0A369LIG9_9ACTN5.520e-2463.75DUF1015 domain-containing protein n=3 Tax=Coriobac... [more]
A0A7R6PM59_9BACT9.400e-2461.73Uncharacterized protein n=1 Tax=Thermotomaculum hy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16856contigH-paniculata_contig16856:372..2162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.3
Seed ortholog evalue1.8e-27
Seed eggNOG ortholog2880.D7G0D7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF1015)
EggNOG OGs2SMYX@2759,COG4198@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size255
Cds size255
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16856.3839.1prot_H-paniculata_contig16856.3839.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16856 372..2162 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929334.573207-CDS-H-paniculata_contig16856:371..4081622929334.573207-CDS-H-paniculata_contig16856:371..408Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16856 372..408 +
1691480819.3620434-CDS-H-paniculata_contig16856:371..4081691480819.3620434-CDS-H-paniculata_contig16856:371..408Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16856 372..408 +
1622929334.5863357-CDS-H-paniculata_contig16856:1389..15411622929334.5863357-CDS-H-paniculata_contig16856:1389..1541Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16856 1390..1541 +
1691480819.3824546-CDS-H-paniculata_contig16856:1389..15411691480819.3824546-CDS-H-paniculata_contig16856:1389..1541Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16856 1390..1541 +
1622929334.600733-CDS-H-paniculata_contig16856:2096..21621622929334.600733-CDS-H-paniculata_contig16856:2096..2162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16856 2097..2162 +
1691480819.3943148-CDS-H-paniculata_contig16856:2096..21621691480819.3943148-CDS-H-paniculata_contig16856:2096..2162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16856 2097..2162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16856.3839.1

>prot_H-paniculata_contig16856.3839.1 ID=prot_H-paniculata_contig16856.3839.1|Name=mRNA_H-paniculata_contig16856.3839.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
IGNPRTDERIKYVGGIRGSEALHGLVTPGDGDGDPWAVAFCMFPVSVDEV
MSVADAEMLMPPKATWFEPKLRSGLIVRLLDDQR*
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mRNA from alignment at H-paniculata_contig16856:372..2162+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16856.3839.1 ID=mRNA_H-paniculata_contig16856.3839.1|Name=mRNA_H-paniculata_contig16856.3839.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1791bp|location=Sequence derived from alignment at H-paniculata_contig16856:372..2162+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGGTAACCCGCGAACCGACGAGAGGATCAAGTACGGTAAGAGAGAATG
ACCAAATACAAAAAAAAACACGGTATAACATCATTGAATTAAAGGCCGGT
ATAACCGATCCAAAAATGGTAGCGCAAAGTGAGGATACGATACATGAGGA
ATCAGGATGGGGGTGTAAGAGGATCCAACACGGTATAAGGAATTCAAGCA
TAGCGTATGTTGGACCCTTTTTGGTGGGTACACTGTGAGCATTTGGTTGG
TTGGTTTGTTCGTGTTTTTGTGGGAAAATGGGAAATGACGCAATCGTGTC
TGACATGCGATGTAAAAGATTTTACATGCTTCCAGCACAGAATAGTCGTG
ATAATTTCACCAGGCTGCCGTTGGTGCACTTATTAGATGGGTATGTTGAG
ATCGCCTGGAAGATACCTGGCTGACGACGCCTCAAACTGTTTTTTTCTTG
GAACACGACATGTGGGGTAGCGATTGTAACCGCGAAGACATGTCACTCTC
TACTGAACTAATTCCCGTGTACAATAACAAATACCCCGTCGTGACTTTTT
TTTTTTTTTTTGCTTTTCGTGTTATGCTGGATGGGAAACTTTGGCAATCA
CCGTGTAAATCCTCGAGGAGTCGAATACTTTTATTTTTTCTTATCTTCCT
TCCGTCTACATTTATCTATAGTTGTAATCATTTTTTTTTTCTCGTCCTCT
TTTCATCCATACCTCCTTTTTTTATTTTTATAATCCTTGCTTCTTTCTCG
TCCTTAGGCCGTTTTCACTTCTTTTTTTTTTTATTACCCTTTCTTTTTAC
TCGTCCTGTTGCTATCCATATCGATATATATATATATATATATATATACT
TTTTTTATTATTCGTATTTTTTTGTCATGTACTAAAGTAAATGTATCGCT
GAAAAGCGCATTAACTTTGGTTTCTGTCGCTTGTATATCGAGCTTTATAT
GGCTCGCTCATTTGGCTTTAAGAACATCTTCTCGCTTTAAGTTTTTCCCC
GCCCGGATAATTTGGCAGTCGGCGGCATCAGAGGTTCAGAGGCGTTGCAT
GGCCTCGTGACACCTGGTGATGGAGACGGGGACCCCTGGGCTGTGGCGTT
CTGCATGTTTCCCGTGTCGGTGGACGAAGTCATGAGCGTGGCAGACGCCG
AAATGCTCATGCCTCCGAAGGTTCGTGTACAAAAAAACTTGTAAAAAAAA
TGCTGTTTTGTATGTGTAACCTGAGTCAACGGTAGAGTTATTTATACATA
CTTAAATTATTTGTTGAACGTTTGGTTTTTGTGTGGATGGACTCGAGGAA
AGGGAGGGAAGGAGGGGGGTCATCATCTCGTATGATTAATTTGCGTCATT
ATCCAACTCGATTATAACGATAGGGTTGCTATTTATATAAATATATATGT
ATATATTTTATTTGACACCTGAGGGATTTATTGCTCGTGAAGAAATTAGC
ATGTATTGGAAGCGTTTTTTACTTGCGGTTATATATTTGAGGGTTATTAC
GTTTTCTGACAAAAAATGCCCTCATGAAATTGTCTGAGTTTTTTTTTTTT
TTTTATGCTCAAAACTCAGAATTTGTTCTTGTTCATAATATATATATATA
TTTTTAATTGTTCCCTTCAACATGATTCACCCAGGAATCTTACCTTGTGA
CGGTGGTGTTATCTGTGTCCAAAATGTGTATCTTGCCACTCCCTCGTACC
GTGATCTTTGTCGCCGGCAAAACAGGCAACGTGGTTCGAACCTAAGCTGC
GATCTGGCCTGATCGTTCGACTCCTAGATGACCAACGATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig16856:372..2162+

>mRNA_H-paniculata_contig16856.3839.1 ID=mRNA_H-paniculata_contig16856.3839.1|Name=mRNA_H-paniculata_contig16856.3839.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig16856:372..2162+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGGTAACCCGCGAACCGACGAGAGGATCAAGTACGATCGGTAACCCGC
GAACCGACGAGAGGATCAAGTACGTCGGCGGCATCAGAGGTTCAGAGGCG
TTGCATGGCCTCGTGACACCTGGTGATGGAGACGGGGACCCCTGGGCTGT
GGCGTTCTGCATGTTTCCCGTGTCGGTGGACGAAGTCATGAGCGTGGCAG
ACGCCGAAATGCTCATGCCTCCGAAGTCGGCGGCATCAGAGGTTCAGAGG
CGTTGCATGGCCTCGTGACACCTGGTGATGGAGACGGGGACCCCTGGGCT
GTGGCGTTCTGCATGTTTCCCGTGTCGGTGGACGAAGTCATGAGCGTGGC
AGACGCCGAAATGCTCATGCCTCCGAAGGCAACGTGGTTCGAACCTAAGC
TGCGATCTGGCCTGATCGTTCGACTCCTAGATGACCAACGATAGGCAACG
TGGTTCGAACCTAAGCTGCGATCTGGCCTGATCGTTCGACTCCTAGATGA
CCAACGATAG
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