mRNA_H-paniculata_contig1685.3836.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1685.3836.1
Unique NamemRNA_H-paniculata_contig1685.3836.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1685.3836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1685contigH-paniculata_contig1685:1509..3371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size448
Cds size444
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1685.3836.1prot_H-paniculata_contig1685.3836.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1685 1511..3371 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929334.0645607-CDS-H-paniculata_contig1685:1510..16291622929334.0645607-CDS-H-paniculata_contig1685:1510..1629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1685 1511..1629 -
1691480819.1236675-CDS-H-paniculata_contig1685:1510..16291691480819.1236675-CDS-H-paniculata_contig1685:1510..1629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1685 1511..1629 -
1622929334.089032-CDS-H-paniculata_contig1685:2157..23911622929334.089032-CDS-H-paniculata_contig1685:2157..2391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1685 2158..2391 -
1691480819.1331828-CDS-H-paniculata_contig1685:2157..23911691480819.1331828-CDS-H-paniculata_contig1685:2157..2391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1685 2158..2391 -
1622929334.102877-CDS-H-paniculata_contig1685:3280..33711622929334.102877-CDS-H-paniculata_contig1685:3280..3371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1685 3281..3371 -
1691480819.1408494-CDS-H-paniculata_contig1685:3280..33711691480819.1408494-CDS-H-paniculata_contig1685:3280..3371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1685 3281..3371 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1685.3836.1

>prot_H-paniculata_contig1685.3836.1 ID=prot_H-paniculata_contig1685.3836.1|Name=mRNA_H-paniculata_contig1685.3836.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp
EDGDGGTEDERGRSVSEAVSTDGGARESYRVGGDAAADEVGVDEGTSTST
SNNSHASTVDTSSTAAMDAAVAPGAAAAAAPTAVVRRQPIVDIEDENSSH
GSQSSSETDAERPGGPSRQDSQVWPVTSSTGQGTLLLNSSRNAAVVGN
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mRNA from alignment at H-paniculata_contig1685:1509..3371-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1685.3836.1 ID=mRNA_H-paniculata_contig1685.3836.1|Name=mRNA_H-paniculata_contig1685.3836.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1863bp|location=Sequence derived from alignment at H-paniculata_contig1685:1509..3371- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGATGGAGACGGAGGTACCGAGGATGAGAGAGGTCGCAGTGTGAGTGA
GGCAGTCAGCACTGACGGCGGCGCACGGGAATCCTATCGAGGTCAGCGCT
TATTCACCGTAGAGTTGGACGGTGTACTTCCGATCGTTAGTTCTAATTAT
GTGACAACGTGTTTCAAGTTTTGATGGTTAGATATGAATGTCGTGAACGA
CAGTTACACACGAGTATTGTGGTGCTTCTCTGAGATATGCGTTTCGCTGT
TGCTCAGAGTTTGCATGCGTAAGTTTAGGAGGGCTTCATACTACCGCTCG
AACAGTAGTTGTCTTCATTACGATGCGATATTTTTACAACGCGCAAAGCC
ACTGATATGAACAGCGGGGTCGGGGTTTGCTGGTGAATGCCGGGGATAGA
GTATAGTCCCCATCGTATATGCGGGTATACATTTGTAGCCCAGGAGAAAT
AGCCTCCCTCTTATGATGATGGGAAAAGTATATAGATTACGTACTTGCCC
AATGTAAGGCCGCGTTTTGTTCCTCTTGAACTACGATTTTGTCGGGCAGT
AAGACCAACTAGGTTTCTACAGCCATGTATAAAAAAAACATGGTGAGATG
GAACGAAAATGTGTGCTCAACACCTAAAAAGTGGGCTGAGAACACATCCC
CCCCTCCCCCAAGTTTCCGACGCAGCTGAGTGTATTTTTTTTTGTTGTTC
GATTTTTGGAAAATGGTGATTCCAAAAACGAAATGCCTGGAGAAACGGAC
AAAGTTGGCAACACTGCTCTCTATGAGATGGCGAATAACTCTCGAGGCAT
GACGCATGGCATCGATAACTGCCTCCCGGGGCATGAACACCGGTAAACGT
TAAAAAAAAATCAAGTTTTCCAACGGCAAGCTTTTAGTTTTCGACCCGTC
AAAGATGCGCCATTAGTGTCAACGTTAATATTATAGCTTGGTTGTTGCTG
TGTGTGTGTGTGTGTGTGTTTTAACGAAAGTTGGTGGGGACGCTGCAGCC
GACGAAGTTGGTGTCGATGAGGGCACCAGCACCAGTACCAGCAACAACAG
CCACGCCAGCACGGTTGACACGTCTTCTACTGCGGCGATGGATGCAGCCG
TTGCTCCCGGTGCCGCCGCTGCTGCTGCTCCTACGGCTGTTGTCCGGCGG
CAGCCAATCGTAGATATTGAGGACGAAAATTCTTCCCACGGTTCGCAATC
TTCCAGCGAGACAGGTACTGTAATGTATTGGACTATAGCTTTTGGTCAAA
AAGGGGGCGTTCATTTCTCTTCGTGGTAGTGGGTGGTGTTAGTGGCGTAA
TCAGAGACCTGAAGCCGTCGAGACATGAATAGCCCCCCGGCCGTCGGAGG
CGGGGACTGAACCCTCTCTCCCATTGGAGGGGTGGTGGAGCTCCTTGAGC
CCCTGTGCCTTCATTTTCCGAAGCCTTAAGACTCTGGGAAAGTCAGGTGT
CCTGGTCCGTATTCAACATCTAAGTCCTTGGGTAATTCAAGAATTACCTG
GATGATTCATCTTGAGCACATTGGATGTAGGCTTAACAGCTGCGATCGAG
ATGGTTCGCTGTCTATAGGGGATGTTCGTTCTTGACCCCGCGCCTCTCTG
CGTCCCCCCGCCCCGCCCTACTTTACCCCTCCACCTTCACACCCAATCAC
CCCCCTCATCACCGATACCACCACCACCACTTTCAACCCCCACGCCATCC
AACACACAAACAAATGAATGATAACAAAAAACCAAAAACCAGACGCGGAA
CGACCGGGTGGACCAAGTCGCCAAGACTCCCAGGTGTGGCCGGTCACATC
CTCCACCGGACAGGGCACCCTCCTGCTTAACTCCTCTCGAAACGCGGCAG
TCGTGGGAAATCC
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Coding sequence (CDS) from alignment at H-paniculata_contig1685:1509..3371-

>mRNA_H-paniculata_contig1685.3836.1 ID=mRNA_H-paniculata_contig1685.3836.1|Name=mRNA_H-paniculata_contig1685.3836.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at H-paniculata_contig1685:1509..3371- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGATGGAGACGGAGGTACCGAGGATGAGAGAGGTCGCAGTGTGAGTGA
GGCAGTCAGCACTGACGGCGGCGCACGGGAATCCTATCGAGGAAGATGGA
GACGGAGGTACCGAGGATGAGAGAGGTCGCAGTGTGAGTGAGGCAGTCAG
CACTGACGGCGGCGCACGGGAATCCTATCGAGTTGGTGGGGACGCTGCAG
CCGACGAAGTTGGTGTCGATGAGGGCACCAGCACCAGTACCAGCAACAAC
AGCCACGCCAGCACGGTTGACACGTCTTCTACTGCGGCGATGGATGCAGC
CGTTGCTCCCGGTGCCGCCGCTGCTGCTGCTCCTACGGCTGTTGTCCGGC
GGCAGCCAATCGTAGATATTGAGGACGAAAATTCTTCCCACGGTTCGCAA
TCTTCCAGCGAGACAGTTGGTGGGGACGCTGCAGCCGACGAAGTTGGTGT
CGATGAGGGCACCAGCACCAGTACCAGCAACAACAGCCACGCCAGCACGG
TTGACACGTCTTCTACTGCGGCGATGGATGCAGCCGTTGCTCCCGGTGCC
GCCGCTGCTGCTGCTCCTACGGCTGTTGTCCGGCGGCAGCCAATCGTAGA
TATTGAGGACGAAAATTCTTCCCACGGTTCGCAATCTTCCAGCGAGACAG
ACGCGGAACGACCGGGTGGACCAAGTCGCCAAGACTCCCAGGTGTGGCCG
GTCACATCCTCCACCGGACAGGGCACCCTCCTGCTTAACTCCTCTCGAAA
CGCGGCAGTCGTGGGAAATACGCGGAACGACCGGGTGGACCAAGTCGCCA
AGACTCCCAGGTGTGGCCGGTCACATCCTCCACCGGACAGGGCACCCTCC
TGCTTAACTCCTCTCGAAACGCGGCAGTCGTGGGAAAT
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