prot_H-paniculata_contig16843.3833.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig16843.3833.1
Unique Nameprot_H-paniculata_contig16843.3833.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length227
Homology
BLAST of mRNA_H-paniculata_contig16843.3833.1 vs. uniprot
Match: D7G465_ECTSI (RPAP3_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G465_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 2.480e-38
Identity = 95/233 (40.77%), Postives = 124/233 (53.22%), Query Frame = 0
Query:    1 MEMLSFQKRGWQERSGAVVSRTPSKNSSADLQSSLRRARVAGGASRNTRCSGTLN-GALVVPADHCQFQRDWRRKCPTDDARCAYLRLVGPERVQKLFQVEMEPDLLGQMLMLICNGFPSSFIDDKRLNEGQP-----EIQPAGSTEASSGCREEHKVKPRAD-DKPTDAAAECMAWLSALSHTGRFGINIKFLEKKENCAVADLFDKLRKCLARRTEEDIATLRSLQQAYSL 226
            MEMLS  KRGWQ R G V   T    S+   ++  R  R     S +T  SG    G L  P DH QFQRDWRR+C T+  R  YLRL+GP+ V  LF+VEMEPD+LGQ+L ++C  FP   +  +RL+   P     E +    T   +G          A  DK    A  C+ WL ALS TGRF +NI FL  KE   +A  FD +   L    +E+I++LR   +AY++
Sbjct:    1 MEMLSVPKRGWQGRVGGVAPTTKVSGSTGRQKAPRRTQR-----SVDTAISGGAKAGPLRAPKDHAQFQRDWRRRCCTNGERRDYLRLIGPKNVSALFRVEMEPDVLGQVLSVVCQEFP---LHPQRLDTAMPATPENEERSGAPTRGDAGGSAAETANGSASADKA--GARFCVEWLWALSRTGRFAVNILFLADKEKQELARAFDLISAVLGDEDDEEISSLR---KAYAV 220          
BLAST of mRNA_H-paniculata_contig16843.3833.1 vs. uniprot
Match: A0A6H5JJ59_9PHAE (RPAP3_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ59_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 7.940e-33
Identity = 89/233 (38.20%), Postives = 116/233 (49.79%), Query Frame = 0
Query:    1 MEMLSFQKRGWQERSGAVVSRTPSKNSSADLQSSLRRARVAGGASRNTRCSGTLNGALVVPADHCQFQRDWRRKCPTDDARCAYLRLVGPERVQKLFQVEMEPDLLGQMLMLICNGFPSSFIDDKRLNEGQPEIQPAGSTEASSGCREEHK------VKPRADDKPTDAAAE-CMAWLSALSHTGRFGINIKFLEKKENCAVADLFDKLRKCLARRTEEDIATLRSLQQAYSL 226
            MEMLS  KRGWQ R G V   T         ++  R  R    A R     G   G L  P DH QFQRDWRR+C T+  R  YLRLVGP+    LF+VEMEPD+LGQ++ ++C  FP      +R++   P  Q     E  SG            +    +    +A A  C+ WL ALS TGRF +NI FL   E  A+A  FD          +E+I++LR   +AY++
Sbjct:   71 MEMLSDPKRGWQGRVGGVAPTTNVSGRIGRQKAPRRTQRSVDTALRG----GAKAGPLRAPKDHAQFQRDWRRRCRTNGERRDYLRLVGPKNASALFRVEMEPDVLGQVISVVCEEFP---FQPQRIDAATPATQ---ENEERSGAPTRGDAAGSTAITANGNASADEAGARLCLEWLRALSRTGRFAVNILFLADNEKQALARAFDLTTAVFG---DEEISSLR---KAYAV 287          
BLAST of mRNA_H-paniculata_contig16843.3833.1 vs. uniprot
Match: A0A836C7R2_9STRA (RPAP3_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7R2_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 8.430e-22
Identity = 66/223 (29.60%), Postives = 102/223 (45.74%), Query Frame = 0
Query:    1 MEMLSFQKRGWQERSGAVVSRTPSKNSSADLQSSLRRARVAGGASRNTRCSGTLN-GALVVPADHCQFQRDWRRKCPTDDARCAYLRLVGPERVQKLFQVEMEPDLLGQMLMLI--CNGFPSSFIDDKRLNEGQPEIQPAGSTEASSGCREEHKVKPRADDKPTDAAAECMAWLSALSHTGRFGINIKFLEKKENCAVADLFDKLRKCLARRTEEDIATLRSL 220
            ME L  Q++GW++      S+ P K+              AG A+  T  S  +  G L  P    +F+RDWRR+C T     A L LVG   + KLF+VE++P LLGQ+L ++  C    S+    +  N    +   A   +A  G                ++ A C+AWL  +  TGRF +N+ FL  +E  A+ ++ D L      +  E++  LR +
Sbjct:    1 MESLGHQQKGWRK----TASKPPPKHK-------------AGAAADKTASSKLVRKGPLQAPTTQSEFERDWRRRCKTHADMVALLGLVGASGMPKLFKVELDPQLLGQILGVLSRCAAADSALPPCQPRNSSSDDGDAANGHQAGGG----------------ESVARCIAWLRGIQGTGRFALNVHFLSDRETAALGEMVDALMPLAEAQQAEELRELRKV 190          
BLAST of mRNA_H-paniculata_contig16843.3833.1 vs. uniprot
Match: A0A7R9V6A5_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V6A5_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 2.140e-9
Identity = 46/142 (32.39%), Postives = 68/142 (47.89%), Query Frame = 0
Query:   61 PADHCQFQRDWRRKCPTDDARCAYLRLVGPERVQKLFQVEMEPDLLGQMLMLICNGFPSSFIDDKRLNEGQPEIQPAGSTEASSGCREEHKVKPRADDKPTDAAAECMAWLSALSHTGRFGINIKFLEKKENCAVADLFDKL 202
            P+    F R+WRR CP+ DA+  YLRLVGP  +Q+LF+VE+  D L  +L  +     + ++    ++ G  E    GS  A S                   A   ++ L+ALS  GRFG+ +K L       +A LF +L
Sbjct:  106 PSTSGDFYREWRRNCPSLDAKYRYLRLVGPNGLQQLFKVEISVDALKDVLTAL----EACWL----VHAGAAEDGAEGSGAALS------------------EAVFVVSVLAALSQAGRFGLTLKLLGSGPKAVLASLFSQL 221          
BLAST of mRNA_H-paniculata_contig16843.3833.1 vs. uniprot
Match: A0A7S2C2K5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C2K5_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.330e-9
Identity = 51/179 (28.49%), Postives = 77/179 (43.02%), Query Frame = 0
Query:   61 PADHCQFQRDWRRKCPTDDARCAYLRLVGPERVQKLFQVEMEPDLLGQMLMLICNGFPSSFIDDKRLNEGQPEIQPAGSTE-----ASSGCREEHKVKPRADDKPTDAAAE----------CMAWLSALSHTGRFGINIKFLEKKENCAVADLFDKLRKCLARRTEEDIATLRSLQQAY 224
            PA   QF+RDWRR C    A+  YLRL G E V  +F+ E++  LLG++L  +                   E++  G+TE     A++  R              +A+A            ++ L AL  TGRF +N+ FLE K+  +VA + +     L     ED   L + +  Y
Sbjct:   84 PATSMQFERDWRRHCKELGAQLRYLRLCGSETVLAVFKTEIDAALLGKLLAALAGR--------------AAELRAGGATEGGRDWAAAEVRXXXXXXXXXXXXXXEASAAEAARLEEPLFLLSILRALPQTGRFSLNVNFLEDKDKASVATVVE----WLGELGVEDAGALEATRALY 244          
BLAST of mRNA_H-paniculata_contig16843.3833.1 vs. uniprot
Match: A0A7S2C1V5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1V5_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 6.670e-9
Identity = 51/179 (28.49%), Postives = 77/179 (43.02%), Query Frame = 0
Query:   61 PADHCQFQRDWRRKCPTDDARCAYLRLVGPERVQKLFQVEMEPDLLGQMLMLICNGFPSSFIDDKRLNEGQPEIQPAGSTE-----ASSGCREEHKVKPRADDKPTDAAAE----------CMAWLSALSHTGRFGINIKFLEKKENCAVADLFDKLRKCLARRTEEDIATLRSLQQAY 224
            PA   QF+RDWRR C    A+  YLRL G E V  +F+ E++  LLG++L  +                   E++  G+TE     A++  R              +A+A            ++ L AL  TGRF +N+ FLE K+  +VA + +     L     ED   L + +  Y
Sbjct:  179 PATSMQFERDWRRHCKELGAQLRYLRLCGSETVLAVFKTEIDAALLGKLLAALAGR--------------AAELRAGGATEGGRDWAAAEVRXXXXXXXXXXXXXXEASAAEAARLEEPLFLLSILRALPQTGRFSLNVNFLEDKDKASVATVVE----WLGELGVEDAGALEATRALY 339          
BLAST of mRNA_H-paniculata_contig16843.3833.1 vs. uniprot
Match: W4H561_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H561_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.770e-7
Identity = 44/161 (27.33%), Postives = 72/161 (44.72%), Query Frame = 0
Query:   57 ALVVPADHCQFQRDWRRKCPTDDARCAYLRLVGPERVQKLFQVEMEPDLLGQMLMLICNGF----PSSFIDDKRLNEGQPEIQPAGSTEASSGCREEHKVKPRADDKPTDAAAECMAWLSALSHTGRFGINIKFLEKKENCAVADLFDKLRKCLARRTEED 213
            A V PA   +F R WRR C T   +  YL++  P RV KLFQ E++ DL+ Q++  +   F    P++ +DD +L     E+  A  T                           ++ L A++ TGRF + + FL   +  +V  L  ++ + L    ++D
Sbjct:  101 AAVPPATSVEFIRTWRRSCLTQRDKYKYLQVTTPPRVAKLFQAELDSDLMLQIVACLSAQFVNLNPNNDVDDYQL-----ELAHAWFT---------------------------LSLLEAVTKTGRFLLTMSFLTADQAASVIHLVARVHEVLGVHDDDD 229          
BLAST of mRNA_H-paniculata_contig16843.3833.1 vs. uniprot
Match: A0A7S0N1U1_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N1U1_9CHLO)

HSP 1 Score: 54.3 bits (129), Expect = 2.830e-5
Identity = 40/172 (23.26%), Postives = 70/172 (40.70%), Query Frame = 0
Query:   53 TLNGALVVPADHCQFQRDWRRKCPTDDARCAYLRLVGPERVQKLFQVEMEPDLLGQMLMLICNGFPSSFIDDKRLNEGQPEIQPAGSTEASSGCREEHKVKPRADDKPTDAAAECMAWLSALSHTGRFGINIKFLEKKENCAVADLFDKLRKCLAR-----RTEEDIATLRS 219
            T +    +P     F+R+W+R CPT   +  Y   V P+   ++F+VE+ P +L  +++++         DD                 A   C  E  +                  LSAL+  GRF +  + L  K   A++ +FD+L+   A       + E++ TLR+
Sbjct:  100 TTSAPQQLPKSSQDFEREWKRNCPTSVDKYKYFLFVPPDLFPQIFKVEITPTMLTDIIVVVNENALQKTGDD-----------------AQDCCTSEEML-------------HIARALSALTGVGRFSLTSRLLAPKAKQALSAIFDRLKAAGASVPNFGYSSEELDTLRA 241          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16843.3833.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G465_ECTSI2.480e-3840.77RPAP3_C domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JJ59_9PHAE7.940e-3338.20RPAP3_C domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836C7R2_9STRA8.430e-2229.60RPAP3_C domain-containing protein n=1 Tax=Tribonem... [more]
A0A7R9V6A5_9CHLO2.140e-932.39Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A7S2C2K5_9STRA3.330e-928.49Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2C1V5_9STRA6.670e-928.49Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
W4H561_9STRA2.770e-727.33Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A7S0N1U1_9CHLO2.830e-523.26Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025986RNA-polymerase II-associated protein 3-like, C-terminal domainPFAMPF13877RPAP3_Ccoord: 62..191
e-value: 1.2E-11
score: 45.0
IPR042422Coiled-coil domain-containing protein 103PANTHERPTHR28572FAMILY NOT NAMEDcoord: 49..215

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16843contigH-paniculata_contig16843:1593..2273 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16843.3833.1mRNA_H-paniculata_contig16843.3833.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig16843 1583..2873 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig16843.3833.1 ID=prot_H-paniculata_contig16843.3833.1|Name=mRNA_H-paniculata_contig16843.3833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=227bp
MEMLSFQKRGWQERSGAVVSRTPSKNSSADLQSSLRRARVAGGASRNTRC
SGTLNGALVVPADHCQFQRDWRRKCPTDDARCAYLRLVGPERVQKLFQVE
MEPDLLGQMLMLICNGFPSSFIDDKRLNEGQPEIQPAGSTEASSGCREEH
KVKPRADDKPTDAAAECMAWLSALSHTGRFGINIKFLEKKENCAVADLFD
KLRKCLARRTEEDIATLRSLQQAYSL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025986RPAP3-like_C
IPR042422CC103