mRNA_H-paniculata_contig16833.3831.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16833.3831.1
Unique NamemRNA_H-paniculata_contig16833.3831.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16833.3831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16833contigH-paniculata_contig16833:1181..1642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size462
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16833.3831.1prot_H-paniculata_contig16833.3831.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16833 1237..1563 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929333.5967176-UTR-H-paniculata_contig16833:1180..12361622929333.5967176-UTR-H-paniculata_contig16833:1180..1236Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16833 1181..1236 +
1691480818.94206-UTR-H-paniculata_contig16833:1180..12361691480818.94206-UTR-H-paniculata_contig16833:1180..1236Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16833 1181..1236 +
1622929333.6297803-UTR-H-paniculata_contig16833:1563..16421622929333.6297803-UTR-H-paniculata_contig16833:1563..1642Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16833 1564..1642 +
1691480818.9598799-UTR-H-paniculata_contig16833:1563..16421691480818.9598799-UTR-H-paniculata_contig16833:1563..1642Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16833 1564..1642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929333.6153345-CDS-H-paniculata_contig16833:1236..15631622929333.6153345-CDS-H-paniculata_contig16833:1236..1563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16833 1237..1563 +
1691480818.9515357-CDS-H-paniculata_contig16833:1236..15631691480818.9515357-CDS-H-paniculata_contig16833:1236..1563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16833 1237..1563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16833.3831.1

>prot_H-paniculata_contig16833.3831.1 ID=prot_H-paniculata_contig16833.3831.1|Name=mRNA_H-paniculata_contig16833.3831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MSLSCRAHAPPLHDTSPIASAASNKTQADNNGASGYALYALSCLNCLLHE
QRRFLTHYVRHPVPFVVLPCRMGGISGGLDAGSGVERVLRIERITTMRTC
IPRISTIR*
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mRNA from alignment at H-paniculata_contig16833:1181..1642+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16833.3831.1 ID=mRNA_H-paniculata_contig16833.3831.1|Name=mRNA_H-paniculata_contig16833.3831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=462bp|location=Sequence derived from alignment at H-paniculata_contig16833:1181..1642+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACCACGTCCTACAACATTCCTTGCTGCGGAACCTCGAAGTCGGGTCCAA
CCCCCGATGTCTCTCTCCTGCAGAGCACACGCTCCACCACTACACGACAC
GTCACCAATCGCAAGCGCGGCCTCCAACAAGACACAGGCCGATAACAACG
GTGCAAGTGGCTATGCTCTCTATGCACTGTCTTGTCTGAACTGCCTGTTG
CATGAGCAGCGGCGGTTCCTTACTCACTATGTTCGTCATCCCGTCCCGTT
CGTCGTTCTTCCCTGTCGTATGGGTGGGATTAGCGGGGGACTTGATGCGG
GGTCCGGCGTTGAAAGGGTACTTCGTATAGAGAGAATAACAACCATGCGC
ACATGTATACCTAGAATATCAACCATTAGATAGCGAAAAGATTCGCACGG
TACTACTGCTGCATCAGCAAGATATTGTGGATGATGACGTGGTGCCCCTT
TCCTGACCACTT
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Coding sequence (CDS) from alignment at H-paniculata_contig16833:1181..1642+

>mRNA_H-paniculata_contig16833.3831.1 ID=mRNA_H-paniculata_contig16833.3831.1|Name=mRNA_H-paniculata_contig16833.3831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig16833:1181..1642+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTCTCTCCTGCAGAGCACACGCTCCACCACTACACGACACGTCACC
AATCGCAAGCGCGGCCTCCAACAAGACACAGGCCGATAACAACGGTGCAA
GTGGCTATGCTCTCTATGCACTGTCTTGTCTGAACTGCCTGTTGCATGAG
CAGCGGCGGTTCCTTACTCACTATGTTCGTCATCCCGTCCCGTTCGTCGT
TCTTCCCTGTCGTATGGGTGGGATTAGCGGGGGACTTGATGCGGGGTCCG
GCGTTGAAAGGGTACTTCGTATAGAGAGAATAACAACCATGCGCACATGT
ATACCTAGAATATCAACCATTAGATAGATGTCTCTCTCCTGCAGAGCACA
CGCTCCACCACTACACGACACGTCACCAATCGCAAGCGCGGCCTCCAACA
AGACACAGGCCGATAACAACGGTGCAAGTGGCTATGCTCTCTATGCACTG
TCTTGTCTGAACTGCCTGTTGCATGAGCAGCGGCGGTTCCTTACTCACTA
TGTTCGTCATCCCGTCCCGTTCGTCGTTCTTCCCTGTCGTATGGGTGGGA
TTAGCGGGGGACTTGATGCGGGGTCCGGCGTTGAAAGGGTACTTCGTATA
GAGAGAATAACAACCATGCGCACATGTATACCTAGAATATCAACCATTAG
ATAG
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