mRNA_H-paniculata_contig1682.3827.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1682.3827.1
Unique NamemRNA_H-paniculata_contig1682.3827.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1682.3827.1 vs. uniprot
Match: D7FMI3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMI3_ECTSI)

HSP 1 Score: 334 bits (856), Expect = 4.010e-112
Identity = 161/212 (75.94%), Postives = 183/212 (86.32%), Query Frame = 1
Query:    1 DQWGVMHNGKEAYSGAVECINRLAESGKKIVLLSNSSKRKEAALKSLQRIGFSTDSVLDVVTSGQIAWDGLQQRNAEPFASLGSKCVVFGSGDEDEEYVTSCGCELAEVDNADFILARGSFVVLDSSGMRRYSPTVMTGEGKAETRKAMETMQMRGKPMLVTNPDFLRPGTNDPMPGLIGKAYTEMGGTTHYVGKPHSAVYETCFQVLQVSK 636
            DQWGVMH+GK  Y GAV+CI+RL+++GKKIVLLSNSSKRK AAL++L+R+GFST S+LDVVTSGQIAWDGLQ R  EPF SLG+KC+VFG+GD+D EYV+SCGC LAEV +ADFILARGSFVV DS+G RRY+PTVMTGEGK ET KAM  M  RG PMLVTNPDFLRPGTNDPMPGLIGKAY EMGGT HY+GKPH AVY+ CF  L  +K
Sbjct:   76 DQWGVMHDGKTPYPGAVDCIDRLSKAGKKIVLLSNSSKRKGAALRNLERMGFSTGSILDVVTSGQIAWDGLQDRVDEPFKSLGAKCLVFGNGDDDLEYVSSCGCTLAEVQDADFILARGSFVVADSNGTRRYTPTVMTGEGKEETHKAMRLMLERGAPMLVTNPDFLRPGTNDPMPGLIGKAYAEMGGTVHYIGKPHPAVYQACFHALATAK 287          
BLAST of mRNA_H-paniculata_contig1682.3827.1 vs. uniprot
Match: A0A7S4D550_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D550_HETAK)

HSP 1 Score: 219 bits (558), Expect = 3.550e-67
Identity = 103/209 (49.28%), Postives = 145/209 (69.38%), Query Frame = 1
Query:    1 DQWGVMHNGKEAYSGAVECINRLAESGKKIVLLSNSSKRKEAALKSLQRIGFSTDSVLDVVTSGQIAWDGLQQRNAEPFASLGSKCVVFGSGDEDEEYVTSCGCELAEVDNADFILARGSFVVLDSSGMRRYSPTVMTGEGKAETRKAMETMQMRGKPMLVTNPDFLRPGTNDPMPGLIGKAYTEMGGTTHYVGKPHSAVYETCFQVLQ 627
            DQ+GV+HNG  AY GA+E + RLA+ GK++V+LSNSSKRK+  +K+L+++GF+ D     VTSG   ++ +  R  EPF SLG++CVVFG+ D+D+ Y++   CEL+ ++ ADF+LARG+FV+LD+    +   ++   E +A     +     RG P+LV NPD  RPG   PMPG+IGK Y +MGGT HY GKPHS+VYE CFQ L+
Sbjct:   78 DQFGVIHNGTHAYQGAIEAVERLAQRGKRLVILSNSSKRKKTGVKNLRKMGFNPDHFCGFVTSGDTVYEEMISRAREPFKSLGTRCVVFGNADDDKAYLSEMQCELSTIEEADFLLARGNFVILDAVETTKCDRSL---ESEARVAAVLAAAAARGLPLLVANPDIARPGCGSPMPGVIGKQYEDMGGTVHYTGKPHSSVYELCFQALE 283          
BLAST of mRNA_H-paniculata_contig1682.3827.1 vs. uniprot
Match: A0A835Z8N2_9STRA (HAD-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8N2_9STRA)

HSP 1 Score: 213 bits (543), Expect = 1.330e-65
Identity = 98/204 (48.04%), Postives = 140/204 (68.63%), Query Frame = 1
Query:    1 DQWGVMHNGKEAYSGAVECINRLAESGKKIVLLSNSSKRKEAALKSLQRIGFSTDSVLDVVTSGQIAWDGLQQRNAEPFASLGSKCVVFGSGDEDEEYVTSCGCELAEVDNADFILARGSFVVLDSSGMRRYSPTVMTGEGKAETRKAMETMQMRGKPMLVTNPDFLRPGTNDPMPGLIGKAYTEMGGTTHYVGKPHSAVYETC 612
            D WGV+H+G + Y G ++C+ +L+  GK +V+LSNSS+RK + L  L+++GF TD +LDVVTSG +AW+ L     EPF SLG  C+V G+GD+D +YV + G  LA+ +  DF+LARGSF +  ++   +   +++    + E   A++T + RG P+LVTNPDFLRPGTNDPMPGLIG+ +   GG  H+VGKP+  VY  C
Sbjct:   22 DAWGVLHDGSKPYPGVLDCLQQLSARGKHVVILSNSSRRKGSVLSGLRKLGFDTDLILDVVTSGDVAWEELHTPTQEPFKSLGRSCLVLGNGDDDVDYVKTAGLTLADAERCDFVLARGSFALTGATSKIQEHASILE---RPEVAAALDTARSRGVPLLVTNPDFLRPGTNDPMPGLIGRDFAAAGGAVHWVGKPYDLVYARC 222          
BLAST of mRNA_H-paniculata_contig1682.3827.1 vs. uniprot
Match: W7UB69_9STRA (Sugar phosphatase of the had superfamily n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7UB69_9STRA)

HSP 1 Score: 192 bits (489), Expect = 3.280e-57
Identity = 102/211 (48.34%), Postives = 137/211 (64.93%), Query Frame = 1
Query:    1 DQWGVMHNGKEAYSGAVECINRLAESGKKIVLLSNSSKRKEAALKSLQRIGFSTDSVLDVVTSGQIAWDGLQQRNAEPFASL-GSKCVVFGSGDEDEEYVTSCGCELAEVDNADFILARGSFVVLDSSGMRRYSPTVMTGEGK-----AETRKAMETMQMRGKPMLVTNPDFLRPG-TNDPMPGLIGKAYTEMGGTTHYVGKPHSAVYETC 612
            DQWGVMH+G  AY GAVEC+  +  +GK ++LLSNSSKRK  +L  L  +GF  +  LDV+TSG++ + GL+   +  +A++ G+  +VFGSGDED EYV S GC ++ V+ ADF+LARG F +LDS      +P    G G+     AE          RG PM+V+NPD +RPG  NDPMPGL+G+AY + GG   YVGKP+  VY+ C
Sbjct:   35 DQWGVMHDGHAAYPGAVECMQSILAAGKYVILLSNSSKRKAGSLARLTDMGFQPEKYLDVITSGELTYLGLKPPRSPSYANIRGTNVLVFGSGDEDREYVESLGCRVSPVEAADFLLARGPFTILDSPDPA--TPPQTFGPGRILHESAEFEAVAAKAIARGLPMIVSNPDIVRPGGDNDPMPGLLGRAYEQKGGQVMYVGKPYPLVYQEC 243          
BLAST of mRNA_H-paniculata_contig1682.3827.1 vs. uniprot
Match: A0A7S0EEY8_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EEY8_9CRYP)

HSP 1 Score: 194 bits (492), Expect = 4.150e-57
Identity = 107/218 (49.08%), Postives = 137/218 (62.84%), Query Frame = 1
Query:    1 DQWGVMHNGKEAYSGAVECINRLAESGKKIVLLSNSSKRKEAALKSLQRIGFSTDSVLDVVTSGQIAWDGLQQRNA-EPFASLGSKCVVFGSGDEDEEYVTSCGCELAEVDNADFILARGSFVVLDSSGMRRYSPTVMTGEGKAETRKAMETMQMRGKPMLVTNPDFLRPGTND-PMPGLIGKAYTEM-------GGTTHYVGKPHSAVYETCFQVLQ 627
            DQWGVMH+GK AY GAVEC+ +L   GKKI+LLSNSS+RK  +LK +  +GF + S+LD++TSG++ W  L +R A  PF SLGSK  VFG+G+ED+EYV S G E A+V+ ADFILARG F +  SS +              E R  ++    R  PM+VTNPDF+RP  ND PMPG +   Y  M            YVGKPHS VY+  F+ L+
Sbjct:   79 DQWGVMHDGKTAYGGAVECMKQLQGLGKKIILLSNSSRRKGNSLKKIDGMGFHSTSILDLITSGEVGWQCLSERPAGTPFESLGSKVYVFGNGEEDDEYVKSAGLEFADVEEADFILARGLFTMQGSSDVLHREGPQKYEAWDMEARSCLQIAANRLLPMVVTNPDFVRPDGNDSPMPGKLAAMYESMLMGQLCAARKVIYVGKPHSLVYDQAFERLK 296          
BLAST of mRNA_H-paniculata_contig1682.3827.1 vs. uniprot
Match: L1J807_GUITC (Uncharacterized protein n=3 Tax=Guillardia theta TaxID=55529 RepID=L1J807_GUITC)

HSP 1 Score: 191 bits (485), Expect = 3.970e-56
Identity = 109/224 (48.66%), Postives = 142/224 (63.39%), Query Frame = 1
Query:    1 DQWGVMHNGKEAYSGAVECINRLAESGKKIVLLSNSSKRKEAALKSLQRIGFSTDSVLDVVTSGQIAWDGLQQRNA-EPFASLGSKCVVFGSGDEDEEYVTSCGCELAEVDNADFILARGSFV------VLDSSGMRRYSPTVMTGEGKAETRKAMETMQMRGKPMLVTNPDFLRP-GTNDPMPGLIGKAYTEM-------GGTTHYVGKPHSAVYETCFQVLQ 627
            DQWGVMH+GK+AY GAVEC+ +L E GKKI LLSNSS+RK  +L  +  +GF + S+LD++TSG++ W  L QR A  PF SLG+K  VFG+G+EDE+YVTS G E A++++ADF+LARG F       VL   G  +Y         +A   +A   +Q+   PM+VTNPDF+RP G + PMPG +   Y  M            YVGKPHS VYE  FQ L+
Sbjct:   79 DQWGVMHDGKKAYGGAVECMKQLQEMGKKIFLLSNSSRRKGNSLNKIDGMGFHSASILDLITSGEVGWQCLSQRPAGTPFESLGNKVFVFGNGEEDEQYVTSAGLEFADIEDADFVLARGLFTMHGLSEVLQREGPNKY---------EAWDMEARSCLQL---PMVVTNPDFVRPDGKDSPMPGKLAAMYESMLMAQLCGERKVTYVGKPHSLVYEQAFQRLK 290          
BLAST of mRNA_H-paniculata_contig1682.3827.1 vs. uniprot
Match: A0A7S4P2V8_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4P2V8_GUITH)

HSP 1 Score: 175 bits (444), Expect = 7.020e-51
Identity = 102/215 (47.44%), Postives = 132/215 (61.40%), Query Frame = 1
Query:   28 KEAYSGAVECINRLAESGKKIVLLSNSSKRKEAALKSLQRIGFSTDSVLDVVTSGQIAWDGLQQRNA-EPFASLGSKCVVFGSGDEDEEYVTSCGCELAEVDNADFILARGSFV------VLDSSGMRRYSPTVMTGEGKAETRKAMETMQMRGKPMLVTNPDFLRP-GTNDPMPGLIGKAYTEM-------GGTTHYVGKPHSAVYETCFQVLQ 627
            K+AY GAVEC+ +L E GKKI LLSNSS+RK  +L  +  +GF + S+LD++TSG++ W  L QR A  PF SLG+K  VFG+G+EDE+YVTS G E A++++ADF+LARG F       VL   G  +Y    M      E R  ++    R  PM+VTNPDF+RP G + PMPG +   Y  M            YVGKPHS VYE  FQ L+
Sbjct:    4 KKAYGGAVECMKQLQEMGKKIFLLSNSSRRKGNSLNKIDGMGFHSASILDLITSGEVGWQCLSQRPAGTPFESLGNKVFVFGNGEEDEQYVTSAGLEFADIEDADFVLARGLFTMHGLSEVLQREGPNKYEAWDM------EARSCLQIAANRLLPMVVTNPDFVRPDGKDSPMPGKLAAMYESMLMAQLCGERKVTYVGKPHSLVYEQAFQRLK 212          
BLAST of mRNA_H-paniculata_contig1682.3827.1 vs. uniprot
Match: A0A7S1XU23_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XU23_9STRA)

HSP 1 Score: 176 bits (445), Expect = 6.130e-50
Identity = 95/210 (45.24%), Postives = 134/210 (63.81%), Query Frame = 1
Query:    1 DQWGVMHNGKEAYSGAVECINRLAESGKKIVLLSNSSKRKEAALKSLQRIGFSTDSVLDVVTSGQIAWDGLQQRNAEPF-ASLGSKCVVFGSGDEDEEYVTSCGCELAEVDNADFILARGSFVVLDSSGMRRYSPTVMTGEGKAETRKAMETMQMRGKPMLVTNPDFLRP-GTNDPMPGLIGKAYTEMGGTTHYVGKPHSAVYETCFQVL 624
            DQ+GV+H+GK AY GA   +  L + GK +V+LSNSS+R+  A K L  +GF    + D+VTSG+ AW  L++R   PF ASLGS C VFG+G++D EY+ + G ++A V  ADF+ ARG F V D +  + Y+      + +A+    +   + R  PM+V NPDF+RP G   PMPG+I   Y ++GGT HY+GKPH  VYE  F++L
Sbjct:   98 DQFGVIHDGKNAYPGAAATVAELLQRGKSVVILSNSSRRRGEAAKKLGAMGF--PEMPDIVTSGEAAWTLLRERPRAPFDASLGSSCAVFGNGEDDLEYMATAGVDIAGVGEADFLFARGLFCVEDGTADKSYT------DERADAM--LVAARERDLPMIVANPDFVRPDGKASPMPGVIAARYEKLGGTVHYIGKPHPMVYEQAFEML 297          
BLAST of mRNA_H-paniculata_contig1682.3827.1 vs. uniprot
Match: A0A7S4CIR6_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CIR6_9EUGL)

HSP 1 Score: 160 bits (406), Expect = 1.900e-45
Identity = 89/201 (44.28%), Postives = 119/201 (59.20%), Query Frame = 1
Query:    1 DQWGVMHNGKEAYSGAVECINRLAESGKKIVLLSNSSKRKEAALKSLQRIGFSTDSVLDVVTSGQIAWDGLQQRNAEPFASLGSKCVVFGSGDEDEEYVTSCGCELAEVDNADFILARGSFVVLDSSGMRRYSPTVMTGEGKAETRKAMETMQMRGKPMLVTNPDFLRPGTNDPMPGLIGKAYTEMGGTTHYVGKPHSAVY 603
            DQWGV+H+GK+ Y GA+EC+ +L   GK+IVLLSNSS R+  +   L+R+GF  +   D+VTSG+++W  L+++ A        +  V G G +DEEYVTS GC  +    AD +LARG F V  S G  +   T     G  +   A+      G PMLV+NPD  RPG+  PMPG I   Y  +GGT H+ GKPH  VY
Sbjct:   32 DQWGVLHDGKQPYDGALECMAKLRAHGKRIVLLSNSSVRRTNSYAGLERLGFGPELFDDIVTSGELSWHWLKEQ-ALSRTDRPLRVFVIGRGQDDEEYVTSAGCVFSGPGTADLVLARGMFSVWRSEGDMQAFATAEQLLGAIDP--ALAQCAALGLPMLVSNPDQNRPGSGAPMPGQIASKYQALGGTVHFRGKPHPEVY 229          
BLAST of mRNA_H-paniculata_contig1682.3827.1 vs. uniprot
Match: A0A7S3WVK0_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WVK0_EMIHU)

HSP 1 Score: 160 bits (405), Expect = 1.930e-45
Identity = 91/208 (43.75%), Postives = 124/208 (59.62%), Query Frame = 1
Query:    1 DQWGVMHNGKEAYSGAVECINRLAESGKKIVLLSNSSKRKEAALKSLQRIGF--------STDSVLDVVTSGQIAWDGLQQRNAEPFASLGSKCVVFGSGDEDEEYVTSCGCELAEVDNADFILARGSFVVLDSS-GMRRYSPTVMTGEGKAETRKAMETMQMRGKPMLVTNPDFLRP-GTNDPMPGLIGKAYTEMGGTT-HYVGKPH 591
            DQ+GV+H+GK AY GAV+ +  L   GKKIV++SNSS+RK   L  L+ +GF        S    + VVTSG + W+GL    A PFA LG +C VFG+G++DEEYV +CG     V  ADF+LARG F +L +   + R   +  + + + E  +A    +  G P++V NPD +RP G + PMPGL+   Y  MG T    VGKPH
Sbjct:   51 DQFGVIHDGKTAYEGAVDAVCELQRRGKKIVIISNSSRRKSDTLARLRSMGFGPCEGDGASDVPPISVVTSGDLVWEGLSAAAAAPFADLGLRCTVFGNGEDDEEYVRTCGRVAVPVAEADFVLARGLFTILGTGPDLLRQPFSPYSADAEEEALRAALAARPGGLPLVVANPDTVRPDGKDSPMPGLLAARYEAMGATDIRPVGKPH 258          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1682.3827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMI3_ECTSI4.010e-11275.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4D550_HETAK3.550e-6749.28Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z8N2_9STRA1.330e-6548.04HAD-like domain-containing protein n=1 Tax=Tribone... [more]
W7UB69_9STRA3.280e-5748.34Sugar phosphatase of the had superfamily n=3 Tax=M... [more]
A0A7S0EEY8_9CRYP4.150e-5749.08Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
L1J807_GUITC3.970e-5648.66Uncharacterized protein n=3 Tax=Guillardia theta T... [more]
A0A7S4P2V8_GUITH7.020e-5147.44Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A7S1XU23_9STRA6.130e-5045.24Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S4CIR6_9EUGL1.900e-4544.28Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S3WVK0_EMIHU1.930e-4543.75Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1682contigH-paniculata_contig1682:366..3830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score324.7
Seed ortholog evalue3.1e-86
Seed eggNOG ortholog2880.D7FMI3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Haloacid dehalogenase-like hydrolase
EggNOG OGs2QU6A@2759,COG0647@1
Ec32 ortholog descriptionHAD-superfamily hydrolase, subfamily IIA
Ec32 orthologEc-23_000410.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size636
Cds size621
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929333.1375415-CDS-H-paniculata_contig1682:365..5081622929333.1375415-CDS-H-paniculata_contig1682:365..508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1682 366..508 -
1691480818.7658908-CDS-H-paniculata_contig1682:365..5081691480818.7658908-CDS-H-paniculata_contig1682:365..508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1682 366..508 -
1622929333.1537337-CDS-H-paniculata_contig1682:1000..11401622929333.1537337-CDS-H-paniculata_contig1682:1000..1140Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1682 1001..1140 -
1691480818.7754595-CDS-H-paniculata_contig1682:1000..11401691480818.7754595-CDS-H-paniculata_contig1682:1000..1140Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1682 1001..1140 -
1622929333.1658063-CDS-H-paniculata_contig1682:1545..16071622929333.1658063-CDS-H-paniculata_contig1682:1545..1607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1682 1546..1607 -
1691480818.7839751-CDS-H-paniculata_contig1682:1545..16071691480818.7839751-CDS-H-paniculata_contig1682:1545..1607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1682 1546..1607 -
1622929333.1881819-CDS-H-paniculata_contig1682:2112..22411622929333.1881819-CDS-H-paniculata_contig1682:2112..2241Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1682 2113..2241 -
1691480818.7941697-CDS-H-paniculata_contig1682:2112..22411691480818.7941697-CDS-H-paniculata_contig1682:2112..2241Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1682 2113..2241 -
1622929333.2016368-CDS-H-paniculata_contig1682:2997..30691622929333.2016368-CDS-H-paniculata_contig1682:2997..3069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1682 2998..3069 -
1691480818.8018103-CDS-H-paniculata_contig1682:2997..30691691480818.8018103-CDS-H-paniculata_contig1682:2997..3069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1682 2998..3069 -
1622929333.2154286-CDS-H-paniculata_contig1682:3740..38151622929333.2154286-CDS-H-paniculata_contig1682:3740..3815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1682 3741..3815 -
1691480818.8089468-CDS-H-paniculata_contig1682:3740..38151691480818.8089468-CDS-H-paniculata_contig1682:3740..3815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1682 3741..3815 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929333.226445-UTR-H-paniculata_contig1682:3815..38301622929333.226445-UTR-H-paniculata_contig1682:3815..3830Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1682 3816..3830 -
1691480818.8164759-UTR-H-paniculata_contig1682:3815..38301691480818.8164759-UTR-H-paniculata_contig1682:3815..3830Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1682 3816..3830 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1682.3827.1prot_H-paniculata_contig1682.3827.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1682 366..3815 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1682.3827.1

>prot_H-paniculata_contig1682.3827.1 ID=prot_H-paniculata_contig1682.3827.1|Name=mRNA_H-paniculata_contig1682.3827.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=207bp
MHNGKEAYSGAVECINRLAESGKKIVLLSNSSKRKEAALKSLQRIGFSTD
SVLDVVTSGQIAWDGLQQRNAEPFASLGSKCVVFGSGDEDEEYVTSCGCE
LAEVDNADFILARGSFVVLDSSGMRRYSPTVMTGEGKAETRKAMETMQMR
GKPMLVTNPDFLRPGTNDPMPGLIGKAYTEMGGTTHYVGKPHSAVYETCF
QVLQVSK
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mRNA from alignment at H-paniculata_contig1682:366..3830-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1682.3827.1 ID=mRNA_H-paniculata_contig1682.3827.1|Name=mRNA_H-paniculata_contig1682.3827.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3465bp|location=Sequence derived from alignment at H-paniculata_contig1682:366..3830- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATCAATGGGGCGTCATGCACAACGGCAAGGAAGCGTACTCGGGAGCAGT GGAGTGCATCAATAGGCTAGCGGAAAGTGGCAAAAAAATAGTGAGCAGCC TTGGAACACCCACCCTAATTTTGACAGAGACCAGGACCACGTTTGCGTGC AGAGTTCGTGGCTAGGGTCGCGCGTATGAAGCCGTCGAACAGCACCACGA CGGTGCCTCTACTACTATTAATAGTATTTCTCTACCAGGCACGATATAGA GATTAGCCTAACCCATGAACACTATTTAGAATGACTTTTATGAGATGACT ACATACTCTAATGTTCTTTGTAGGAATCATTGAGATGGCCGCGCATTCTT GTTGGCATTCCGCAGATTTCCAGTCTAGTAAAAAATGAAGTTTGGCGTGT GTGTCGTACTGAAGCACTGATTGTAACCCCATCGACAGCCACGTTATTAC GTCTTGCTGAATGGTACCATCGCCGCCTTTAGCTTTTGTGCAATTGACCT ACTCCAGTACAGTGCTGTTATGGTGTATGAGTATACTCCCTGTAGCATTT AGGCATTCCAAATAGTATAGTCTCACTCAACAAAATATTAACATAAAAAA AGATATGCTGTGATATGCACGTACGTTTGCATGAGTCAATGTTGTAGAGC TACTAGACTGGTAGACAAGTAGAGAGTTGCTCACTGTGGCCCCCATCGTC GAAGTTTACACTCCATGTTCTGATATGCTAGCTCTCTCTCTGTACTGGAT TCGAGATGCAGGTTTTGTTGAGCAACTCCTCCAAGCGAAAGGAGGCAGCT CTGAAAAGTCTCCAACGGATAGGCTTTTCCACGGTGAGTCAATCTCTAAA ATATAAACTCACCCAAACCCAACTAGTCAAGCCCATGACAATAGCCTCAG GAGTCTAACTACCTTAATCCTAAAGCTCTACTAGTGTCTAAAACTCGCCT GCAAGGTCCGCCTCTGCCAGGTCCAACAGCCAAGTCTGCAAGGTGTGATG GTAATTTAATATTTGTATACACTAAAACTTGATGTAGGGATCGTCACAGG ACGCATGACACATGACCCAGTCACACCTTCCGCAGGCCTGACTCAAGGCA TGGTGAAGCATGCTTGCTGGTACAGCTCAAGGTGTGATCTCGAGATTTGC TGTGGAATCATATCACACATCGAATTACGGTACATGACTTTACTCTAGTG TAGATATCAATCTACCAATATTCGTACTGACCATCGCGTTGCTCGGCGTT GAGGTAGGTGCTGTTTGGTTCCCTCACCTCCGATACGATATTGCTTAACT CATGAACCAATTTACCGTGACCAACATCGTCTGTATGATAATTGTCATTT CCTTACATGACTACGTGGGGAAAATGGAAGCATCGGGTAAAGTTTTTTGC CTTAGACTTCTGGGGGTTAAAAAAAAAAAAAAAGAGACTGTGGGAAAATG AAAAATTGCCAAATCTAGCTTTGGTTTTCGCCGTTTTGTTACTATGATTC ATTTCCGCTGCCTTGTTTCGATTGAACTCGATTTCACTTGAATTTAACTG TTTTCGTGTCGCTGTTTCGTCGCCCTGTGGTACAAGCAGGACAGTGTCCT GGATGTAGTTACAAGTGGACAAATTGCGTGGGACGGGCTGCAGCAGAGGA ATGCGGAGCCGTTCGCTTCTCTAGGGTCAAAATGTGTCGTGTTCGGCAGT GGAGACGAAGATGAAGAGGTTGATACACTAAAATTTATTGATAAGATCAT GTTGTGGTCTTTATGGCGTTTGTTGAATGCAATTTTGATATTGTCGCAGT ACTGCTGAAGGCTACGTACGGATGGAGAGGCAACCTGTAAAATACCATGT CATGCAACTACGTGGATCACCAAGTTTTCACTAGACTGATAGTATCCAGT ACCTGTAGTGACTGTACTTTGACGACATTTGGTAGCTTCGTAGCAGCGAC AAGTACTACTGTACGTATGCACTGTTTGGAGTTCTTGCAGAGCGTAGTCG ATCATTTCGCTGGATTTCACACAATACGTCGCTGTGTTTGGAAATTAGTG TTACATAATGGTGGTGCAGGTCGAATCGCATGCCATGACATGTCATCATG CCAAACGCAAAAGTTGCCACCAAAGGGCAACGCGATGTGGCACGACACGA CATGAAATGGCATGGTATGACATGACGTGATCGTCAGCACTTGTCCTTTG TTTTATTTCTATTTTTGTTTCAGTATGTGACGAGCTGTGGCTGCGAGCTG GCGGAGGTGGACAACGCAGATTTCATTCTAGCAAGGTACGTCTCCCACCT TCCCCCCCTTCCTCTCGCCTCTCTTCGCTCTGTTCGTCCTGTATCTCAAG ATGCACCATGGTCCTCCACCGCCCCCCTATATGCCGCTGGCTTAATGTAC ATGTCCAACGGTACTGTCTCCAACGCATTGTGGCACTAAATTGTCGGCCT CTGCTCCGTTGAATCATGCATTAGTTGACATTGTAACCTGTTCGTCTATG CCACGAGTCCAGCCTGGCGCGGTTTCGGACGACGATATCAAGCAAGAGAG ATAAAATATGCCAAAACAATGGGTCCACTGTGCCGTATGCACCACTACAT AGATGTATTTCATGTACTCCACAGTCTGAAGTTCATCTTCCCTTGTCATC GTTGTTGTTTGGATATTGGTTATTGTTCATTTTTGTGTAGGGGATCTTTC GTGGTACTCGACTCCAGTGGGATGAGGCGCTATTCTCCTACAGTGATGAC TGGCGAGGGCAAGGCAGAGACACGGAAGGCAATGGAGACGATGCAAATGC GCGGGAAGCCTATGCTGGTCACCAATCCAGGTGTGGTACTGGCTTATTCT AGGTATTGACGATGCGTATCACTGTACAATAGAGTAGTCTCAATCAAATA CACTACATGCGGAGGAAGGTGCTTTGCGACAGAGGAGATTGTTCCTTCTC ACAACAGTAAAAAAACCGAGCGTTGCAGTACAGCATTAATAACGCAAATA AACTTACGTCTTTATTTTATATCCGGTCATGAATTGAGGCGGCAACCCGA GGTGCTCACGACTTAGACCAATATTGTGGCAAGAGTTTTTTCAGAATCCG TGCTGTATATTAAATTTTTGAATTGGCAACGAAGCTAGCTCAATTGTGCC CTTTTGTTAATGCTACTTATATAATAGAGATGACTCCACTATACGGGATA CTGGAACACGCTAGCTAGCCAGTCATGAATAACCAAAGTCACAGTCAAAG TCGTGTGCATGTTCGTTTATTACGTGTATCATCTGTGTCAAACAAACAGC CTCCCTCCTTTTTACCGTGCAGACTTTTTGAGACCTGGGACGAACGACCC CATGCCGGGGCTGATCGGAAAGGCGTACACGGAGATGGGAGGCACAACGC ATTATGTGGGCAAGCCGCATTCAGCGGTGTATGAAACGTGCTTCCAGGTC TTGCAGGTGAGCAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1682:366..3830-

>mRNA_H-paniculata_contig1682.3827.1 ID=mRNA_H-paniculata_contig1682.3827.1|Name=mRNA_H-paniculata_contig1682.3827.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at H-paniculata_contig1682:366..3830- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACAACGGCAAGGAAGCGTACTCGGGAGCAGTGGAGTGCATCAATAG
GCTAGCGGAAAGTGGCAAAAAAATAATGCACAACGGCAAGGAAGCGTACT
CGGGAGCAGTGGAGTGCATCAATAGGCTAGCGGAAAGTGGCAAAAAAATA
GTTTTGTTGAGCAACTCCTCCAAGCGAAAGGAGGCAGCTCTGAAAAGTCT
CCAACGGATAGGCTTTTCCACGGTTTTGTTGAGCAACTCCTCCAAGCGAA
AGGAGGCAGCTCTGAAAAGTCTCCAACGGATAGGCTTTTCCACGGACAGT
GTCCTGGATGTAGTTACAAGTGGACAAATTGCGTGGGACGGGCTGCAGCA
GAGGAATGCGGAGCCGTTCGCTTCTCTAGGGTCAAAATGTGTCGTGTTCG
GCAGTGGAGACGAAGATGAAGAGGACAGTGTCCTGGATGTAGTTACAAGT
GGACAAATTGCGTGGGACGGGCTGCAGCAGAGGAATGCGGAGCCGTTCGC
TTCTCTAGGGTCAAAATGTGTCGTGTTCGGCAGTGGAGACGAAGATGAAG
AGTATGTGACGAGCTGTGGCTGCGAGCTGGCGGAGGTGGACAACGCAGAT
TTCATTCTAGCAAGTATGTGACGAGCTGTGGCTGCGAGCTGGCGGAGGTG
GACAACGCAGATTTCATTCTAGCAAGGGGATCTTTCGTGGTACTCGACTC
CAGTGGGATGAGGCGCTATTCTCCTACAGTGATGACTGGCGAGGGCAAGG
CAGAGACACGGAAGGCAATGGAGACGATGCAAATGCGCGGGAAGCCTATG
CTGGTCACCAATCCAGGGGATCTTTCGTGGTACTCGACTCCAGTGGGATG
AGGCGCTATTCTCCTACAGTGATGACTGGCGAGGGCAAGGCAGAGACACG
GAAGGCAATGGAGACGATGCAAATGCGCGGGAAGCCTATGCTGGTCACCA
ATCCAGACTTTTTGAGACCTGGGACGAACGACCCCATGCCGGGGCTGATC
GGAAAGGCGTACACGGAGATGGGAGGCACAACGCATTATGTGGGCAAGCC
GCATTCAGCGGTGTATGAAACGTGCTTCCAGGTCTTGCAGGTGAGCAAAA
CTTTTTGAGACCTGGGACGAACGACCCCATGCCGGGGCTGATCGGAAAGG
CGTACACGGAGATGGGAGGCACAACGCATTATGTGGGCAAGCCGCATTCA
GCGGTGTATGAAACGTGCTTCCAGGTCTTGCAGGTGAGCAAA
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