prot_H-paniculata_contig16814.3826.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig16814.3826.1
Unique Nameprot_H-paniculata_contig16814.3826.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length123
Homology
BLAST of mRNA_H-paniculata_contig16814.3826.1 vs. uniprot
Match: D7G1R1_ECTSI (60S ribosomal export protein NMD3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1R1_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 2.820e-65
Identity = 106/123 (86.18%), Postives = 117/123 (95.12%), Query Frame = 0
Query:    1 EPHSKRLKVKVTVRKEVLNKVMLQQDTTVEFVVQNKQCNVCNKEFTNQTWKAVVQLRQRSGHKRTMLLLEQRILHADAHRKCVSVETVRGGIDVYFGAKHDAAEFVQFLSSVAPIRCRESTKV 123
            EPHSKRLKV++TVRKEVLNKVMLQQD TVEFVV N+QCNVCNKEFTNQTWKA+VQ+RQR+GHKRTM+LLEQRIL ADAHRKC+SVETVRGG+DVYFGAKHDA EFV +LSSVAPIR RESTK+
Sbjct:  152 EPHSKRLKVRITVRKEVLNKVMLQQDATVEFVVHNRQCNVCNKEFTNQTWKAIVQIRQRAGHKRTMMLLEQRILQADAHRKCISVETVRGGMDVYFGAKHDAVEFVGYLSSVAPIRSRESTKL 274          
BLAST of mRNA_H-paniculata_contig16814.3826.1 vs. uniprot
Match: A0A7S3V6M2_9STRA (60S ribosomal export protein NMD3 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V6M2_9STRA)

HSP 1 Score: 130 bits (328), Expect = 4.270e-33
Identity = 68/123 (55.28%), Postives = 87/123 (70.73%), Query Frame = 0
Query:    1 EPHSKRLKVKVTVRKEVLNKVMLQQDTTVEFVVQNKQCNVCNKEFTNQTWKAVVQLRQRSGHKRTMLLLEQRILHADAHRKCVSVETVRGGIDVYFGAKHDAAEFVQFLSSVAPIRCRESTKV 123
            EPHS RLK+K+TV+KEV +  +LQQ   VEFVV+N+QC  C  EF   +WK++VQ+RQR GHKRT L LEQ+IL   AHR  +SVET R G+D YF  K  AA F+ FL +  PI+ +ES K+
Sbjct:  107 EPHSMRLKIKLTVQKEVQSGTILQQSFVVEFVVRNQQCTECQAEFRQGSWKSLVQVRQRVGHKRTFLYLEQQILRHGAHRGALSVETFRDGMDFYFPDKGKAARFITFLENCVPIKTKESKKL 229          
BLAST of mRNA_H-paniculata_contig16814.3826.1 vs. uniprot
Match: A0A6H0XX31_9PEZI (60S ribosomal export protein NMD3 n=1 Tax=Peltaster fructicola TaxID=286661 RepID=A0A6H0XX31_9PEZI)

HSP 1 Score: 130 bits (326), Expect = 4.700e-33
Identity = 63/123 (51.22%), Postives = 90/123 (73.17%), Query Frame = 0
Query:    1 EPHSKRLKVKVTVRKEVLNKVMLQQDTTVEFVVQNKQCNVCNKEFTNQTWKAVVQLRQRSGHKRTMLLLEQRILHADAHRKCVSVETVRGGIDVYFGAKHDAAEFVQFLSSVAPIRCRESTKV 123
            EPHS+R+KVK+TV++E L   +LQQ   VEFV Q KQC  C K +T+ TW+AVVQ+RQ+  HKRT L LEQ IL   AH+ C++++ V+ GID YF  ++ A +FV+FL+SV P+R ++S ++
Sbjct:  112 EPHSRRIKVKITVQQEALQGTILQQTFEVEFVQQYKQCPDCQKSYTHNTWRAVVQVRQKVPHKRTFLYLEQNILKQGAHKDCINIKEVQNGIDFYFAHRNQAEKFVEFLTSVTPVRTKKSQEL 234          
BLAST of mRNA_H-paniculata_contig16814.3826.1 vs. uniprot
Match: A0A836CPD6_9STRA (60S ribosomal export protein NMD3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPD6_9STRA)

HSP 1 Score: 129 bits (325), Expect = 6.450e-33
Identity = 65/123 (52.85%), Postives = 90/123 (73.17%), Query Frame = 0
Query:    1 EPHSKRLKVKVTVRKEVLNKVMLQQDTTVEFVVQNKQCNVCNKEFTNQTWKAVVQLRQRSGHKRTMLLLEQRILHADAHRKCVSVETVRGGIDVYFGAKHDAAEFVQFLSSVAPIRCRESTKV 123
            EPHS R+KVK+T++++VLN VMLQQ+  VEFVVQ +QC+ CN+EFTNQTWKAVVQ+RQR  HKRT   LEQ IL A+A  + V + +++ G+D +F  +  A +F  +L+ V P R  +S K+
Sbjct:   98 EPHSMRIKVKLTLKRDVLNGVMLQQEKVVEFVVQWRQCSDCNREFTNQTWKAVVQVRQRVDHKRTFFYLEQLILAANAQHRAVDIRSLKDGMDFFFAERAHALQFADWLAGVVPQRSTKSKKL 220          
BLAST of mRNA_H-paniculata_contig16814.3826.1 vs. uniprot
Match: UPI00077AA23C (LOW QUALITY PROTEIN: 60S ribosomal export protein NMD3-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AA23C)

HSP 1 Score: 124 bits (310), Expect = 3.380e-32
Identity = 59/123 (47.97%), Postives = 86/123 (69.92%), Query Frame = 0
Query:    1 EPHSKRLKVKVTVRKEVLNKVMLQQDTTVEFVVQNKQCNVCNKEFTNQTWKAVVQLRQRSGHKRTMLLLEQRILHADAHRKCVSVETVRGGIDVYFGAKHDAAEFVQFLSSVAPIRCRESTKV 123
            EPHSKR+KVK+T++KEVLN  +LQQ   VEFVVQN+ C VC+++     W A+VQ+RQ++ HK+T   LEQ IL  +AH   V V+    G+D ++ ++ DA +FV+F+ +V P RC+ S K+
Sbjct:  105 EPHSKRIKVKLTIQKEVLNSTILQQVFVVEFVVQNQMCEVCHRQAAQDYWNALVQVRQKTSHKKTFFYLEQLILKHNAHHNTVKVKQESDGVDFFYASRADARKFVEFIQTVVPCRCKTSEKL 227          
BLAST of mRNA_H-paniculata_contig16814.3826.1 vs. uniprot
Match: A0A7S3Y5Y4_HETAK (60S ribosomal export protein NMD3 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5Y4_HETAK)

HSP 1 Score: 122 bits (307), Expect = 4.130e-32
Identity = 60/123 (48.78%), Postives = 86/123 (69.92%), Query Frame = 0
Query:    1 EPHSKRLKVKVTVRKEVLNKVMLQQDTTVEFVVQNKQCNVCNKEFTNQTWKAVVQLRQRSGHKRTMLLLEQRILHADAHRKCVSVETVRGGIDVYFGAKHDAAEFVQFLSSVAPIRCRESTKV 123
            E HS+RLKVK TV++EV+N+ +LQQ   V +VV+N+QC  C   ++NQ+WKA VQ+RQR  HKRT L LEQ +L   AH + +S+E+ R G+D +F  ++ AA F  FL  V P+R ++S K+
Sbjct:   18 EAHSRRLKVKATVQQEVVNRAVLQQSIVVTYVVRNQQCEDCAATYSNQSWKAQVQVRQRVPHKRTFLYLEQLVLRHGAHERALSIESFRDGMDFFFAERNQAAAFTSFLEGVCPVRVKKSKKL 140          
BLAST of mRNA_H-paniculata_contig16814.3826.1 vs. uniprot
Match: A0A7S1UD66_9STRA (60S ribosomal export protein NMD3 (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UD66_9STRA)

HSP 1 Score: 120 bits (300), Expect = 5.540e-32
Identity = 59/123 (47.97%), Postives = 82/123 (66.67%), Query Frame = 0
Query:    1 EPHSKRLKVKVTVRKEVLNKVMLQQDTTVEFVVQNKQCNVCNKEFTNQTWKAVVQLRQRSGHKRTMLLLEQRILHADAHRKCVSVETVRGGIDVYFGAKHDAAEFVQFLSSVAPIRCRESTKV 123
            EPHS+RLK K+TV+KEV+N  +LQQ   VEFV++N+QC  C + F   +W+A+VQLRQR  HKRT   LEQ +L   AH K   ++ +R G+D YF  +  A+ F+QF+ S  P + R S K+
Sbjct:   15 EPHSRRLKTKLTVQKEVVNGAVLQQSFIVEFVIRNQQCQDCQRAFAEGSWQALVQLRQRVDHKRTFFYLEQLLLKHGAHEKASGIQALRDGMDFYFETRSHASHFLQFIGSAVPCKTRHSRKL 137          
BLAST of mRNA_H-paniculata_contig16814.3826.1 vs. uniprot
Match: A0A7S2LTA5_9STRA (60S ribosomal export protein NMD3 (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LTA5_9STRA)

HSP 1 Score: 122 bits (307), Expect = 8.660e-32
Identity = 66/123 (53.66%), Postives = 83/123 (67.48%), Query Frame = 0
Query:    1 EPHSKRLKVKVTVRKEVLNKVMLQQDTTVEFVVQNKQCNVCNKEFTNQTWKAVVQLRQRSGHKRTMLLLEQRILHADAHRKCVSVETVRGGIDVYFGAKHDAAEFVQFLSSVAPIRCRESTKV 123
            EPHS RLKV++TV+KEV    +LQQ     FVV+N+QC  C  EF   +WK++VQ+RQR  HKRT L LEQ IL   AHR C+SVET R G+D YF  K  AA F+ FL +V PI+ + S K+
Sbjct:  124 EPHSMRLKVRLTVQKEVQQGTILQQAFVATFVVRNQQCLECQAEFRQGSWKSLVQVRQRVRHKRTFLYLEQLILKHGAHRGCLSVETFRDGMDFYFPDKGKAARFISFLENVVPIKVKTSKKL 246          
BLAST of mRNA_H-paniculata_contig16814.3826.1 vs. uniprot
Match: A0A7S2WJE1_9STRA (60S ribosomal export protein NMD3 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJE1_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.740e-31
Identity = 60/123 (48.78%), Postives = 85/123 (69.11%), Query Frame = 0
Query:    1 EPHSKRLKVKVTVRKEVLNKVMLQQDTTVEFVVQNKQCNVCNKEFTNQTWKAVVQLRQRSGHKRTMLLLEQRILHADAHRKCVSVETVRGGIDVYFGAKHDAAEFVQFLSSVAPIRCRESTKV 123
            EPHS RLK+KVT++KEV    +LQQ   VEFV++N+QC  C K++T+ TWKAVVQ+RQR  HKRT   LEQ +L  + H +C+S+++ R G+D YF  K++A  F  FL    P+R + + K+
Sbjct:  105 EPHSMRLKIKVTIQKEVDGGAILQQSFVVEFVIRNQQCEDCQKQYTDGTWKAVVQVRQRVDHKRTFYYLEQLLLKHNVHSRCISIQSFRDGMDFYFAEKNEAVRFTDFLQGNIPVRIKNTKKL 227          
BLAST of mRNA_H-paniculata_contig16814.3826.1 vs. uniprot
Match: A0A8J9TAK1_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TAK1_PHATR)

HSP 1 Score: 125 bits (315), Expect = 1.850e-31
Identity = 66/123 (53.66%), Postives = 86/123 (69.92%), Query Frame = 0
Query:    1 EPHSKRLKVKVTVRKEVLNKVMLQQDTTVEFVVQNKQCNVCNKEFTNQTWKAVVQLRQRSGHKRTMLLLEQRILHADAHRKCVSVETVRGGIDVYFGAKHDAAEFVQFLSSVAPIRCRESTKV 123
            EPHS RLKV++TV++EV +  +LQQ  TV FVV+N+QC  C  EF   +WK++VQ+RQR  HKRT L LEQ IL   AHR C+S+ET R G+D YF  K  AA F+ FL +V PI+ + S K+
Sbjct:  111 EPHSMRLKVRLTVQREVESGTILQQSFTVVFVVRNQQCIECQAEFRQGSWKSLVQVRQRVSHKRTFLYLEQLILKHGAHRGCLSIETFRDGMDFYFPDKGKAARFISFLENVCPIKVKTSKKL 233          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16814.3826.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1R1_ECTSI2.820e-6586.1860S ribosomal export protein NMD3 n=1 Tax=Ectocarp... [more]
A0A7S3V6M2_9STRA4.270e-3355.2860S ribosomal export protein NMD3 n=1 Tax=Chaetoce... [more]
A0A6H0XX31_9PEZI4.700e-3351.2260S ribosomal export protein NMD3 n=1 Tax=Peltaste... [more]
A0A836CPD6_9STRA6.450e-3352.8560S ribosomal export protein NMD3 n=1 Tax=Tribonem... [more]
UPI00077AA23C3.380e-3247.97LOW QUALITY PROTEIN: 60S ribosomal export protein ... [more]
A0A7S3Y5Y4_HETAK4.130e-3248.7860S ribosomal export protein NMD3 (Fragment) n=1 T... [more]
A0A7S1UD66_9STRA5.540e-3247.9760S ribosomal export protein NMD3 (Fragment) n=1 T... [more]
A0A7S2LTA5_9STRA8.660e-3253.6660S ribosomal export protein NMD3 (Fragment) n=1 T... [more]
A0A7S2WJE1_9STRA1.740e-3148.7860S ribosomal export protein NMD3 n=1 Tax=Rhizochr... [more]
A0A8J9TAK1_PHATR1.850e-3153.66Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007064Nmd3, N-terminalPFAMPF04981NMD3coord: 1..122
e-value: 1.7E-37
score: 129.2
IPR039768Ribosomal export protein Nmd3PANTHERPTHR12746NONSENSE-MEDIATED MRNA DECAY PROTEIN 3coord: 1..122

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16814contigH-paniculata_contig16814:316..4257 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16814.3826.1mRNA_H-paniculata_contig16814.3826.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig16814 316..4257 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig16814.3826.1 ID=prot_H-paniculata_contig16814.3826.1|Name=mRNA_H-paniculata_contig16814.3826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
EPHSKRLKVKVTVRKEVLNKVMLQQDTTVEFVVQNKQCNVCNKEFTNQTW
KAVVQLRQRSGHKRTMLLLEQRILHADAHRKCVSVETVRGGIDVYFGAKH
DAAEFVQFLSSVAPIRCRESTKV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007064Nmd3_N
IPR039768Nmd3