mRNA_H-paniculata_contig16730.3799.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16730.3799.1
Unique NamemRNA_H-paniculata_contig16730.3799.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16730.3799.1 vs. uniprot
Match: D8LR94_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR94_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 2.430e-21
Identity = 44/59 (74.58%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:   34 SPLLSSIVQCGVVGLQLHHREAQRGVLHCLEEVVGLAIPQTAKGAVNPNAQRFMPTVQK 210
            SPLLSS+V+CG+VGLQLHHREAQRGVLHCLEEVVGLA+ +   G  NP AQ+FMPTV++
Sbjct:  844 SPLLSSLVRCGMVGLQLHHREAQRGVLHCLEEVVGLAMAEGPTGKANPRAQQFMPTVEQ 902
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BLAST of mRNA_H-paniculata_contig16730.3799.1 vs. uniprot
Match: A0A7S3NIA9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIA9_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.370e-8
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:   34 SPLLSSIVQCGVVGLQLHHREAQRGVLHCLEEVVGLAIPQTAKGAVN-----PNAQR 189
            SPLL S+++CG+VGL L HREAQRG+LHC E  V +A       + N     P+A+R
Sbjct:  961 SPLLESVLRCGIVGLALEHREAQRGILHCFERTVVVAYEAALNASQNGDPSTPDARR 1017
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16730.3799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LR94_ECTSI2.430e-2174.58Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3NIA9_9STRA3.370e-849.12Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16730contigH-paniculata_contig16730:5200..5409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue8e-18
Seed eggNOG ortholog2880.D8LR94
KEGG rclassRC00017
KEGG koko:K05288,ko:K15436
KEGG ReactionR05923,R08107
KEGG Pathwayko00563,ko01100,map00563,map01100
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.nuclear localization sequence binding
EggNOG OGsKOG2081@1,KOG2081@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03016
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929326.5290294-CDS-H-paniculata_contig16730:5199..54091622929326.5290294-CDS-H-paniculata_contig16730:5199..5409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16730 5200..5409 -
1691480816.9243908-CDS-H-paniculata_contig16730:5199..54091691480816.9243908-CDS-H-paniculata_contig16730:5199..5409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16730 5200..5409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16730.3799.1prot_H-paniculata_contig16730.3799.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16730 5200..5409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16730.3799.1

>prot_H-paniculata_contig16730.3799.1 ID=prot_H-paniculata_contig16730.3799.1|Name=mRNA_H-paniculata_contig16730.3799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
LPWRTLSVGRCSPLLSSIVQCGVVGLQLHHREAQRGVLHCLEEVVGLAIP
QTAKGAVNPNAQRFMPTVQK
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mRNA from alignment at H-paniculata_contig16730:5200..5409-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16730.3799.1 ID=mRNA_H-paniculata_contig16730.3799.1|Name=mRNA_H-paniculata_contig16730.3799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at H-paniculata_contig16730:5200..5409- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCCATGGCGTACGCTTTCCGTCGGTCGGTGCAGCCCACTTTTGTCTTC
GATAGTACAGTGCGGTGTGGTGGGTCTACAGCTTCACCATCGCGAGGCAC
AGCGGGGGGTGCTGCACTGCTTGGAGGAGGTCGTCGGGCTGGCGATTCCG
CAGACGGCCAAGGGCGCGGTGAATCCGAACGCGCAGAGGTTCATGCCCAC
CGTACAGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig16730:5200..5409-

>mRNA_H-paniculata_contig16730.3799.1 ID=mRNA_H-paniculata_contig16730.3799.1|Name=mRNA_H-paniculata_contig16730.3799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig16730:5200..5409- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCCATGGCGTACGCTTTCCGTCGGTCGGTGCAGCCCACTTTTGTCTTC
GATAGTACAGTGCGGTGTGGTGGGTCTACAGCTTCACCATCGCGAGGCAC
AGCGGGGGGTGCTGCACTGCTTGGAGGAGGTCGTCGGGCTGGCGATTCCG
CAGACGGCCAAGGGCGCGGTGAATCCGAACGCGCAGAGGTTCATGCCCAC
CGTACAGAAGTTGCCATGGCGTACGCTTTCCGTCGGTCGGTGCAGCCCAC
TTTTGTCTTCGATAGTACAGTGCGGTGTGGTGGGTCTACAGCTTCACCAT
CGCGAGGCACAGCGGGGGGTGCTGCACTGCTTGGAGGAGGTCGTCGGGCT
GGCGATTCCGCAGACGGCCAAGGGCGCGGTGAATCCGAACGCGCAGAGGT
TCATGCCCACCGTACAGAAG
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