mRNA_H-paniculata_contig1673.3797.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1673.3797.1
Unique NamemRNA_H-paniculata_contig1673.3797.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1673.3797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1673contigH-paniculata_contig1673:1034..2484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1137
Cds size753
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1673.3797.1prot_H-paniculata_contig1673.3797.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1673 1417..2484 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929325.708478-UTR-H-paniculata_contig1673:1033..14161622929325.708478-UTR-H-paniculata_contig1673:1033..1416Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1673 1034..1416 +
1691480816.7495337-UTR-H-paniculata_contig1673:1033..14161691480816.7495337-UTR-H-paniculata_contig1673:1033..1416Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1673 1034..1416 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929325.7225437-CDS-H-paniculata_contig1673:1416..21071622929325.7225437-CDS-H-paniculata_contig1673:1416..2107Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1673 1417..2107 +
1691480816.7578783-CDS-H-paniculata_contig1673:1416..21071691480816.7578783-CDS-H-paniculata_contig1673:1416..2107Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1673 1417..2107 +
1622929325.7361925-CDS-H-paniculata_contig1673:2422..24841622929325.7361925-CDS-H-paniculata_contig1673:2422..2484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1673 2423..2484 +
1691480816.7676492-CDS-H-paniculata_contig1673:2422..24841691480816.7676492-CDS-H-paniculata_contig1673:2422..2484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1673 2423..2484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1673.3797.1

>prot_H-paniculata_contig1673.3797.1 ID=prot_H-paniculata_contig1673.3797.1|Name=mRNA_H-paniculata_contig1673.3797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=251bp
MLHTTRNMAKLDEPQSVPGSVEQVTSATAAPADVTVPLTEVGEIVLGNGG
VDPQASQQSHSPKQPQAITSPHSPDSSDGGDLFPSEASAGDYGAITVEEA
RHYSLPPPQEAFPRSDADVPGARNTGINGTDSEVAMVEAAAASVAEAEVA
AAVKGASRSGARKRRSAVAAAAAGIGCCADVGLSSAEEGLSAVVGGVGVA
ADVAAEQLASDDAGCVSAIAGGSDSGVEGLGTAGADENPTSHQQKKNAPG
K
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mRNA from alignment at H-paniculata_contig1673:1034..2484+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1673.3797.1 ID=mRNA_H-paniculata_contig1673.3797.1|Name=mRNA_H-paniculata_contig1673.3797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1451bp|location=Sequence derived from alignment at H-paniculata_contig1673:1034..2484+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAAGATAGTTCGAGAATCGTGGCGTGGGGTAAAAGTTCGGCAGTTTTC
GCCTGAGAAGAATGGGTGAGGACTACGGTGCGGCTCACGGGACCACTAAA
ACTGGCGCGCTCGACTTTCGGTTACACCGGCAACAACGGGTCCAAGACAG
GGTGTTAAGGCAGGGTTGTAGAAAATCATCGTAACGGGTGTATACGGTTA
CGACGAAATAAAAACAACAGTGAAAAAACACGCTGATTGTTCTGTTAGTG
CGGTACGACAGAAGAGGAACAGGGTGCCTGAGGCGAACTTTTGCTCGCCG
GACAGGGGTCGAGAGGCGACGGAGAGAAGCGAATTCACATCGGTTTCTGT
CTTGGTGGATATCTACATACTGCAAATTAATAGATGCTACACACAACGCG
GAACATGGCAAAGCTAGACGAGCCCCAAAGCGTACCGGGCAGCGTAGAGC
AAGTTACCTCTGCTACAGCCGCTCCCGCCGACGTCACAGTGCCCCTGACG
GAAGTCGGCGAAATTGTTCTGGGTAACGGCGGGGTGGACCCCCAAGCGTC
CCAGCAGAGCCATAGCCCCAAGCAGCCACAGGCAATCACATCTCCTCACA
GCCCAGACTCTAGTGACGGGGGGGATTTGTTCCCTTCCGAGGCTAGCGCC
GGAGACTACGGCGCAATTACCGTAGAGGAGGCGAGACATTACAGTTTGCC
GCCACCTCAGGAGGCGTTCCCTCGGAGTGACGCGGACGTCCCTGGGGCGA
GGAACACCGGCATCAACGGGACAGATAGCGAGGTGGCAATGGTAGAGGCT
GCTGCTGCGTCTGTGGCGGAGGCGGAGGTGGCGGCGGCTGTGAAGGGCGC
ATCGAGGAGTGGTGCGAGGAAAAGGCGGTCTGCGGTCGCGGCTGCTGCCG
CTGGGATAGGTTGCTGTGCAGATGTTGGTCTGTCTTCTGCGGAGGAAGGG
CTCTCGGCGGTGGTCGGGGGGGTTGGGGTGGCAGCGGACGTGGCGGCCGA
GCAGCTGGCTTCGGACGATGCGGGCTGTGTATCTGCTATCGCGGGAGGAT
CCGACTCTGGTGTGGAAGGTTTAGGTGAAATTGGGGTCGGTGATGAAGTG
TCAACTTTTGTGGCTTGTGTTTTGCAATGTCTGTTTTTGTGTTTATATCG
GTATTTGTTGAAGTGAGCACGGGTCCATTGTATGTTCTTAGTGTATAGAG
TTGTTGACAATTTGTCAGGTTGTCTTGGGTGTGCCAGAAGAATCAAATAA
TCGACAAAATAGTGCCAGAACCACTTGGACAGTACGGAAGTTAAGTTTTT
GAAGCCCACAACAGAGACCTAACTTCACAACATCAATCGCTCAAATTCTA
CACCTCATAATGTCTATGTTCCGACGTGCATTACCAAAGGTACCGCCGGG
GCCGATGAAAACCCAACATCACACCAGCAGAAGAAGAATGCCCCCGGAAA
G
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Coding sequence (CDS) from alignment at H-paniculata_contig1673:1034..2484+

>mRNA_H-paniculata_contig1673.3797.1 ID=mRNA_H-paniculata_contig1673.3797.1|Name=mRNA_H-paniculata_contig1673.3797.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1506bp|location=Sequence derived from alignment at H-paniculata_contig1673:1034..2484+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTACACACAACGCGGAACATGGCAAAGCTAGACGAGCCCCAAAGCGT
ACCGGGCAGCGTAGAGCAAGTTACCTCTGCTACAGCCGCTCCCGCCGACG
TCACAGTGCCCCTGACGGAAGTCGGCGAAATTGTTCTGGGTAACGGCGGG
GTGGACCCCCAAGCGTCCCAGCAGAGCCATAGCCCCAAGCAGCCACAGGC
AATCACATCTCCTCACAGCCCAGACTCTAGTGACGGGGGGGATTTGTTCC
CTTCCGAGGCTAGCGCCGGAGACTACGGCGCAATTACCGTAGAGGAGGCG
AGACATTACAGTTTGCCGCCACCTCAGGAGGCGTTCCCTCGGAGTGACGC
GGACGTCCCTGGGGCGAGGAACACCGGCATCAACGGGACAGATAGCGAGG
TGGCAATGGTAGAGGCTGCTGCTGCGTCTGTGGCGGAGGCGGAGGTGGCG
GCGGCTGTGAAGGGCGCATCGAGGAGTGGTGCGAGGAAAAGGCGGTCTGC
GGTCGCGGCTGCTGCCGCTGGGATAGGTTGCTGTGCAGATGTTGGTCTGT
CTTCTGCGGAGGAAGGGCTCTCGGCGGTGGTCGGGGGGGTTGGGGTGGCA
GCGGACGTGGCGGCCGAGCAGCTGGCTTCGGACGATGCGGGCTGTGTATC
TGCTATCGCGGGAGGATCCGACTCTGGTGTGGAAGGTTTAGATGCTACAC
ACAACGCGGAACATGGCAAAGCTAGACGAGCCCCAAAGCGTACCGGGCAG
CGTAGAGCAAGTTACCTCTGCTACAGCCGCTCCCGCCGACGTCACAGTGC
CCCTGACGGAAGTCGGCGAAATTGTTCTGGGTAACGGCGGGGTGGACCCC
CAAGCGTCCCAGCAGAGCCATAGCCCCAAGCAGCCACAGGCAATCACATC
TCCTCACAGCCCAGACTCTAGTGACGGGGGGGATTTGTTCCCTTCCGAGG
CTAGCGCCGGAGACTACGGCGCAATTACCGTAGAGGAGGCGAGACATTAC
AGTTTGCCGCCACCTCAGGAGGCGTTCCCTCGGAGTGACGCGGACGTCCC
TGGGGCGAGGAACACCGGCATCAACGGGACAGATAGCGAGGTGGCAATGG
TAGAGGCTGCTGCTGCGTCTGTGGCGGAGGCGGAGGTGGCGGCGGCTGTG
AAGGGCGCATCGAGGAGTGGTGCGAGGAAAAGGCGGTCTGCGGTCGCGGC
TGCTGCCGCTGGGATAGGTTGCTGTGCAGATGTTGGTCTGTCTTCTGCGG
AGGAAGGGCTCTCGGCGGTGGTCGGGGGGGTTGGGGTGGCAGCGGACGTG
GCGGCCGAGCAGCTGGCTTCGGACGATGCGGGCTGTGTATCTGCTATCGC
GGGAGGATCCGACTCTGGTGTGGAAGGTTTAGGTACCGCCGGGGCCGATG
AAAACCCAACATCACACCAGCAGAAGAAGAATGCCCCCGGAAAGGTACCG
CCGGGGCCGATGAAAACCCAACATCACACCAGCAGAAGAAGAATGCCCCC
GGAAAG
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