prot_H-paniculata_contig16710.3792.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig16710.3792.1
Unique Nameprot_H-paniculata_contig16710.3792.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length308
Homology
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BLAST of mRNA_H-paniculata_contig16710.3792.1 vs. uniprot
Match: D8LGY8_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY8_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 3.040e-69
Identity = 193/340 (56.76%), Postives = 207/340 (60.88%), Query Frame = 0 
Query:   11 LRSLVVDHLASNDLLQSLAVFLPESGLGNAVASAAAPNTPACNIDNSQRPTATVAGAGVGRHMAA-AALCREDVLQGLPIAAESALFRRVISRA--GGGXXXXXXPPQKGEGVAAAGEAEGC------------------------------------RRVFGLLEALVAEVAARSCAVAVDSNTQTDELGRSHKENLDSRLGEVRENWLRRSADERLAPARDVTERMLAYQRECESRAAAQAS--------VKVEVESFRQRDLTALRLQMAANHRREVDSMRKELQQAQYDGRVSRLEEVERERDRRHTERLREXXXXXXXXXQQLLREMDLLRTREQ 303
            L SLVVDHLASN LLQSLAVFLPESGLG              N  N    TATV G G G   AA AAL REDVLQ LPI A+S LFRRVI RA  G G          GE  A  G A G                                     +RV GLLEALV EVA RS AVAVDSNTQTDE GRSHKENL +RL  VRE WLRRSADER  PA+DVTERMLAYQRECESRAAAQAS        +K E +SFR+RDL ALR+QMA+  RREVD+MRKELQ +QYD RV RL+E ER+R+         XXXXXXXXX      MDLLRTREQ
Sbjct:  118 LHSLVVDHLASNGLLQSLAVFLPESGLGGG-----------SNCGN----TATV-GTGPGAAPAAEAALSREDVLQALPIPADSNLFRRVIRRAEEGEGKAAGSVCRSDGETAAVPGAAAGADTAVVSNASVAVXXXXXXXXXXXXXXXXXXXXSREQKRVCGLLEALVGEVATRSRAVAVDSNTQTDEAGRSHKENLVTRLEAVRETWLRRSADERREPAQDVTERMLAYQRECESRAAAQASCWVAPRLLIKAERDSFRERDLAALRVQMASTRRREVDAMRKELQ-SQYDARVERLQETERDREXXXXXXXXXXXXXXXXXXXXXXXXMDLLRTREQ 440
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16710.3792.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGY8_ECTSI3.040e-6956.76LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 236..256
NoneNo IPR availablePANTHERPTHR39063FAMILY NOT NAMEDcoord: 135..303
IPR006594LIS1 homology motifPFAMPF16045LisH_2coord: 13..38
e-value: 1.2E-9
score: 37.0
IPR006594LIS1 homology motifPROSITEPS50896LISHcoord: 7..39
score: 7.873

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16710contigH-paniculata_contig16710:983..5767 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16710.3792.1mRNA_H-paniculata_contig16710.3792.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig16710 983..5767 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig16710.3792.1 ID=prot_H-paniculata_contig16710.3792.1|Name=mRNA_H-paniculata_contig16710.3792.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=308bp
PPRASTRSPSLRSLVVDHLASNDLLQSLAVFLPESGLGNAVASAAAPNTP
ACNIDNSQRPTATVAGAGVGRHMAAAALCREDVLQGLPIAAESALFRRVI
SRAGGGSGSGSGPPQKGEGVAAAGEAEGCRRVFGLLEALVAEVAARSCAV
AVDSNTQTDELGRSHKENLDSRLGEVRENWLRRSADERLAPARDVTERML
AYQRECESRAAAQASVKVEVESFRQRDLTALRLQMAANHRREVDSMRKEL
QQAQYDGRVSRLEEVERERDRRHTERLRELEGAQFEARQQLLREMDLLRT
REQVGVP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006594LisH