mRNA_H-paniculata_contig16708.3789.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16708.3789.1
Unique NamemRNA_H-paniculata_contig16708.3789.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16708.3789.1 vs. uniprot
Match: D7FZF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF6_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 1.210e-39
Identity = 119/215 (55.35%), Postives = 140/215 (65.12%), Query Frame = 2 
Query:   83 GVSMPRRSGRQSDLLLEVEALEPQQLMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAAHGLGLG--------------GXXXXXXXXXXXXXXXXXXTASAESLDLLSQRSLEEELYLLLPVLLSYAPRIKMREASAALMRTRFAPSLLHVSVMNDPLSLESIVLGVCDA--ATPTGNPPRTPRHVAQRAYELLLELCKLGQITAFRVRALLVS 679
            G S+ RR G+Q DLLLEVE+LEP+QLMS                            S A G+G                 XXXXXXXXX   XXXXXX  S+ESLDLLSQRSLEEEL++LLPVLL++APR++MRE+SAAL+RTRFAPSLLHVS MNDPLSLESIVLGVCDA  ATP     RT   V++RA EL++ LC LG I + +VR +L S
Sbjct:  236 GGSVSRRDGKQMDLLLEVESLEPKQLMSSGGRQSPSRGVVSRAS------------SPAVGVGAAXXXXXXXXXXXXVEAXXXXXXXXXAVGXXXXXXXXSSESLDLLSQRSLEEELHMLLPVLLAHAPRVRMRESSAALLRTRFAPSLLHVSAMNDPLSLESIVLGVCDAVAATPGITATRTSHRVSRRAEELVMRLCGLGAIASVKVRQVLRS 438
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16708.3789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZF6_ECTSI1.210e-3955.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16708contigH-paniculata_contig16708:1186..4823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size685
Cds size672
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16708.3789.1prot_H-paniculata_contig16708.3789.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16708 1199..4823 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929324.8078594-UTR-H-paniculata_contig16708:1185..11981622929324.8078594-UTR-H-paniculata_contig16708:1185..1198Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16708 1186..1198 +
1691480816.3308706-UTR-H-paniculata_contig16708:1185..11981691480816.3308706-UTR-H-paniculata_contig16708:1185..1198Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16708 1186..1198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929324.824099-CDS-H-paniculata_contig16708:1198..13511622929324.824099-CDS-H-paniculata_contig16708:1198..1351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16708 1199..1351 +
1691480816.345664-CDS-H-paniculata_contig16708:1198..13511691480816.345664-CDS-H-paniculata_contig16708:1198..1351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16708 1199..1351 +
1622929324.8371189-CDS-H-paniculata_contig16708:1684..18901622929324.8371189-CDS-H-paniculata_contig16708:1684..1890Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16708 1685..1890 +
1691480816.3551602-CDS-H-paniculata_contig16708:1684..18901691480816.3551602-CDS-H-paniculata_contig16708:1684..1890Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16708 1685..1890 +
1622929324.854677-CDS-H-paniculata_contig16708:4263..44191622929324.854677-CDS-H-paniculata_contig16708:4263..4419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16708 4264..4419 +
1691480816.3659832-CDS-H-paniculata_contig16708:4263..44191691480816.3659832-CDS-H-paniculata_contig16708:4263..4419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16708 4264..4419 +
1622929324.8686628-CDS-H-paniculata_contig16708:4666..48231622929324.8686628-CDS-H-paniculata_contig16708:4666..4823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16708 4667..4823 +
1691480816.3740082-CDS-H-paniculata_contig16708:4666..48231691480816.3740082-CDS-H-paniculata_contig16708:4666..4823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16708 4667..4823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16708.3789.1

>prot_H-paniculata_contig16708.3789.1 ID=prot_H-paniculata_contig16708.3789.1|Name=mRNA_H-paniculata_contig16708.3789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=224bp
MDGGGEGGDGKDAGEKGGGGNNGGVSMPRRSGRQSDLLLEVEALEPQQLM
SGGSGGGIFDQSQSSSTPRNQLGGGGGTSSAAHGLGLGGGVAGGIGDGGW
EGGSGGGTASAESLDLLSQRSLEEELYLLLPVLLSYAPRIKMREASAALM
RTRFAPSLLHVSVMNDPLSLESIVLGVCDAATPTGNPPRTPRHVAQRAYE
LLLELCKLGQITAFRVRALLVSER
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mRNA from alignment at H-paniculata_contig16708:1186..4823+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16708.3789.1 ID=mRNA_H-paniculata_contig16708.3789.1|Name=mRNA_H-paniculata_contig16708.3789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3638bp|location=Sequence derived from alignment at H-paniculata_contig16708:1186..4823+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTGGTGACCGCCATGGATGGCGGTGGAGAGGGCGGAGATGGAAAAGATG
CAGGAGAAAAAGGAGGGGGAGGCAACAACGGAGGTGTTTCTATGCCCCGA
CGATCTGGACGGCAATCGGATCTGCTCTTGGAAGTGGAGGCGCTGGAACC
TCAGCAGCTCATGTCGGTGAGAGGATTACATATTATATTGTCATGCTGAA
CCCTTCAGGTAAATATATATATATTTTCATCGTTTCGTGGCGAATTCTCG
AAGTAGCCGTATATTCCTCCCGGGTATGGAGACTCATGTTACGGGTCGAG
ACATTTGAGATATTGAAACGGACAGATAGAAGCACGCGGACCTGACTCGC
TGCTGCGCTCGTCAATTATCAACACCACGTAGGTTGTCCTACGCGAGTTA
CTGCTGCTTATGGCAGCCATCCGCCGAGATAAAGGGGATATAATTCCTAT
CGAGCCGGCGGTGGACGCCGCTAGTACCGGATCCCCGACGACAGGGCAGG
GCGGCAGCGGCGGCGGGATTTTCGACCAATCGCAAAGCAGCAGCACTCCT
CGCAATCAGCTAGGGGGAGGAGGAGGCACGTCGTCGGCCGCCCATGGGCT
TGGATTGGGAGGCGGTGTTGCTGGGGGGATAGGAGACGGGGGGTGGGAAG
GAGGGAGCGGGGGGGGCACTGCTTCGGCGGAGAGTTTGGACTTGCTGAGT
CAGAGGTATGGTGGTCGCTCTTCGGCGCTGTGTGCTTTTGTGTGTGTGTT
TTGGGAGGGGGGTAGTGACACGGCTTACACGTGTATGTTTTACAGAATTT
AAACAACGCACACACCGATCGTAATCCGCGCCCACGTGTTTATCAAATCA
TGGTCACCATTAGTAGCTCTATCAAGTCTCCATATACTACCGTAACTCCC
TCTTATATTGCACCCCACTGACATTTTTTCCTAAACCTAATTCCCTCGAG
AAGCAAGAACCTGCCTGCATTGCCGAAAGAGGAGGTAAACAACCAAAGTA
TCTCGACGAGATCTTTCCAACGATGCCGCTATCTGCGTTATGAGCACCGT
CTTTGTCGAGAAAATCGAGTTTGAAAATTAATATGACGGGTTGCGATATC
GAAGGGTGTTCCGGTAATAGCTCAATCATCTTACCCCTGCTGAGTTTTTA
CATGCTGATAAGTTCTCGCACCTGGGATTTCAGGTGTGTTGCTTAGCCTC
AACCCCCTCTCCCTTCACTTGGTCGTGCTCTAATTGTGCTGGGAAGTACA
CACAATTGAGATATGAGGTCAGCTGCATAACCTACCTGTAAAGAGCTAAT
TGCCCCCCCTTTTTAATGAGATTTTTTTGCTGATAAGTGTAGACTGACAT
TTGAGGTCAGCTGCACAGCCTCAACATGAGGATGATGGTGGAGTTATTAT
TATTAATTTTCTTAACACCCGGAAGGCTAAGGCAAAAACCTTTACCGATG
CTTCCATACTTGAAGTATTTCTACCAAAGTATTTCTACATTTCCTTTAAT
AGAACAGAGTTATTTATTCCTCTGTGGAGTTGTTATTTAGCGTTTTAGAT
GTACTCTACTGACTGGCGGCTAGTGGGTTGGGGGGTGATTTTAACAGCTG
AGTTTTGTCATGCGTTCAAGTGAAAGTCATGTCATGCCTAGTCGAAGAGG
TGCGAGAACTCTTGGGACTTGGTACTGATAAGATCGAGATGCATGTCATA
TCATCAGTATCTTGTCGATTTACCAAGTAGCGTAAACCCCCCAAGCATCC
GTCAAGTCCAGTCGAAAGTCAAGTCACCTAGTGGGCATGCGTGATTTGTC
GCGGATGAGCTGTAGCAGTGGTGATGGGGGAACAAGCACTTGTTCGTGCA
CAGTTCTCTTGGCGTAGTGTACTCCAAGCTCTCACAATGGGGGTAGCTGG
GCTTCAGGCTACGGGCTAGCACTCCCAGGCATTAGTGTACACTGTGCGTA
TCGTGAGCAGTGTATTGATGGCGTTTTTTCTTGCTATTCCCCCGTTTTAT
CTTTCATGTGTCATGCTCTGTGCTTCCATGATTTTCCCGCAGTTTCGGCT
TATTGGTTGTTGTACCTGTTCGTGACAAAACATCGTAAAAGGTATAGGAA
GTTATGTTCGACACGAGAAGAACCTAGGGTATATTGTATGCCCCCCCCCC
CCCTCCCCCCCCCAAGGGTATATACGTGATGCTATTAATAGATGGACAGA
TCGTCGATACTTTCGAAGTACAAATTCATGAACAGAAAATGGTTGGACGG
GTCCGTAATTGTTCGTGAGTCAGACGTGTATCGGTGTGAGGTGATAATTA
TCAGGCTACGATCCCCCCGTCACACCCATCCACCCGCCCACCACCGGCAG
AGAGAGAAGTGTACATGGTGAATTTCGAAGAAGTTGAAGGGTGAGGTAGG
GAGACCTTCTTTATCGCCTGATAGTTTTTTTCAACGAAGGCGATTGGGGT
TAACAGGAGGAACGAAGAAAATAGCCTGAAAAGGACGGTGAGAGCTGATG
TTTGTTGATACGGTAGTAGTAATTGTTTTTTTTTTTGAGACATGTTTGGT
GATGTGGGAAAGAGTGATTTATTACCCATCGAATGGAGATGTATTGCTCT
GATGGGATTGAATATCTGTCCTCTCGAGGATGCGTGGTCAAAGGTCTATT
GTAGTGACTGAAGATCGTACAACGTGGGCAGGCCCTCTTTGTTGGTTTGC
TTTTGCTCACAGGTGCATACAGCTGCAGATTGACGTCAGCTGCATAACCT
ACCTCAACATGGGTACAATGGAGTGTTATTATATGAGCTTCAGAGTTGTA
GTTCAACTGACTGTGGCAGGTACCCCCCCCCTCCCCCACCTGCCCAACGC
TCCTCGTGGGCGCCCAACTTGTGCACTAATAAAATCCGTTCATGAAGGAG
CACTCGAGCGGCTTCAAGATGCTGAGTGTACACATACTTCTTTTTTTTTT
TTTTAACGGTTTTTGCAAGCTTTTGTCGTGTGTTGTATAGTAATTCATCT
GCTTGCATCTTTGACTCCCTTTTGGATTATGGTGTTCCCCCTCGACCCCC
CCCCCCCACTATCGTTATCTGTGTGAAGGTCCCTCGAAGAGGAGCTGTAT
CTGCTATTACCAGTACTGCTGTCGTATGCTCCGAGGATAAAGATGAGGGA
GGCTTCGGCCGCTCTGATGCGCACTCGCTTTGCACCTTCCCTCCTTCACG
TGTCGGTGATGAACGACCCACTCAGCCTGGAAAGGTTAGATACTGGATCT
AATGTTTTGATTTCAGCTGTATAACCTCTACAGGGGTAAATTTGAGTTAT
TATATGAGCTTCAGAGTTATAGATCAACTATCCCCCATTCTGTCTTCCAT
TCCTTCCTTTCTTTCATTCCTTTCTTCCGTTCTATTTCTTCCTCTCCTTC
CATCCTTCCGTCCTTCTCTCCTTTTTGGCCGACTTTATCTAAAACTCGAA
CTATTGTTTTCGCTGAAAATCTTTTTGACAGCATCGTCTTGGGCGTGTGC
GACGCCGCCACCCCTACTGGAAATCCGCCACGTACGCCCCGTCACGTCGC
TCAGCGAGCATATGAACTCCTGCTAGAACTGTGCAAGCTGGGTCAAATCA
CGGCCTTCAGAGTCCGCGCCCTCTTGGTGAGTGAGAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig16708:1186..4823+

>mRNA_H-paniculata_contig16708.3789.1 ID=mRNA_H-paniculata_contig16708.3789.1|Name=mRNA_H-paniculata_contig16708.3789.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1344bp|location=Sequence derived from alignment at H-paniculata_contig16708:1186..4823+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGGCGGTGGAGAGGGCGGAGATGGAAAAGATGCAGGAGAAAAAGG
AGGGGGAGGCAACAACGGAGGTGTTTCTATGCCCCGACGATCTGGACGGC
AATCGGATCTGCTCTTGGAAGTGGAGGCGCTGGAACCTCAGCAGCTCATG
TCGATGGATGGCGGTGGAGAGGGCGGAGATGGAAAAGATGCAGGAGAAAA
AGGAGGGGGAGGCAACAACGGAGGTGTTTCTATGCCCCGACGATCTGGAC
GGCAATCGGATCTGCTCTTGGAAGTGGAGGCGCTGGAACCTCAGCAGCTC
ATGTCGGGCGGCAGCGGCGGCGGGATTTTCGACCAATCGCAAAGCAGCAG
CACTCCTCGCAATCAGCTAGGGGGAGGAGGAGGCACGTCGTCGGCCGCCC
ATGGGCTTGGATTGGGAGGCGGTGTTGCTGGGGGGATAGGAGACGGGGGG
TGGGAAGGAGGGAGCGGGGGGGGCACTGCTTCGGCGGAGAGTTTGGACTT
GCTGAGTCAGAGGGCGGCAGCGGCGGCGGGATTTTCGACCAATCGCAAAG
CAGCAGCACTCCTCGCAATCAGCTAGGGGGAGGAGGAGGCACGTCGTCGG
CCGCCCATGGGCTTGGATTGGGAGGCGGTGTTGCTGGGGGGATAGGAGAC
GGGGGGTGGGAAGGAGGGAGCGGGGGGGGCACTGCTTCGGCGGAGAGTTT
GGACTTGCTGAGTCAGAGGTCCCTCGAAGAGGAGCTGTATCTGCTATTAC
CAGTACTGCTGTCGTATGCTCCGAGGATAAAGATGAGGGAGGCTTCGGCC
GCTCTGATGCGCACTCGCTTTGCACCTTCCCTCCTTCACGTGTCGGTGAT
GAACGACCCACTCAGCCTGGAAAGGTCCCTCGAAGAGGAGCTGTATCTGC
TATTACCAGTACTGCTGTCGTATGCTCCGAGGATAAAGATGAGGGAGGCT
TCGGCCGCTCTGATGCGCACTCGCTTTGCACCTTCCCTCCTTCACGTGTC
GGTGATGAACGACCCACTCAGCCTGGAAAGCATCGTCTTGGGCGTGTGCG
ACGCCGCCACCCCTACTGGAAATCCGCCACGTACGCCCCGTCACGTCGCT
CAGCGAGCATATGAACTCCTGCTAGAACTGTGCAAGCTGGGTCAAATCAC
GGCCTTCAGAGTCCGCGCCCTCTTGGTGAGTGAGAGACATCGTCTTGGGC
GTGTGCGACGCCGCCACCCCTACTGGAAATCCGCCACGTACGCCCCGTCA
CGTCGCTCAGCGAGCATATGAACTCCTGCTAGAACTGTGCAAGCTGGGTC
AAATCACGGCCTTCAGAGTCCGCGCCCTCTTGGTGAGTGAGAGA
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