mRNA_H-paniculata_contig16705.3788.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16705.3788.1
Unique NamemRNA_H-paniculata_contig16705.3788.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig16705.3788.1 vs. uniprot
Match: A0A6H5KHG0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG0_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.710e-42
Identity = 72/119 (60.50%), Postives = 84/119 (70.59%), Query Frame = 1
Query:   37 ADGTLD-----EVQERFGQRPTSWWTGLWPAD---APGARPDGRVSSIPGLMLKGCTKQALQDYFDNAWVLTEILFASLQGEEAFLCPPTHGLRHPLIFYYGHTAVFYVNKLRVAGLIQ 369
            ADG LD     E  + FG R   WWTG  P++    PG R DG++SS+P L+L+ CTKQ    YFDN+W+LTE LFA LQGEEAFL  P HGLRHPLIFYYGH A FYVNKLR AG++Q
Sbjct:   40 ADGGLDAPPLAEPGDLFGPRSDGWWTGRRPSEQGEVPGRREDGKISSLPQLVLRDCTKQVA--YFDNSWMLTESLFAGLQGEEAFLLRPLHGLRHPLIFYYGHAAAFYVNKLRAAGILQ 156          
BLAST of mRNA_H-paniculata_contig16705.3788.1 vs. uniprot
Match: D7FTN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN7_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 1.340e-39
Identity = 69/110 (62.73%), Postives = 82/110 (74.55%), Query Frame = 1
Query:   49 LDEVQERFGQRPTSWWTGLWPAD---APGARPDGRVSSIPGLMLKGCTKQALQDYFDNAWVLTEILFASLQGEEAFLCPPTHGLRHPLIFYYGHTAVFYVNKLRVAGLIQ 369
            L E  + FG R   WWTG  P++    PG R DG++SS+P L+L+ CTKQ+LQ YFDN+W+LTE LFA LQGEEAFL  P HGLRHPLIFYYGH A  YVNKLR AG++Q
Sbjct:   41 LAEPGDLFGPRSDGWWTGRRPSEEGEVPGRREDGKISSLPQLVLRDCTKQSLQAYFDNSWMLTESLFAGLQGEEAFLLRPLHGLRHPLIFYYGHAAALYVNKLRAAGILQ 150          
BLAST of mRNA_H-paniculata_contig16705.3788.1 vs. uniprot
Match: A0A7U7GD36_9GAMM (Uncharacterized protein n=1 Tax=Candidatus Contendobacter odensis Run_B_J11 TaxID=1400861 RepID=A0A7U7GD36_9GAMM)

HSP 1 Score: 141 bits (355), Expect = 2.270e-36
Identity = 63/102 (61.76%), Postives = 74/102 (72.55%), Query Frame = 1
Query:   64 ERFGQRPTSWWTGLWPADAPGARPDGRVSSIPGLMLKGCTKQALQDYFDNAWVLTEILFASLQGEEAFLCPPTHGLRHPLIFYYGHTAVFYVNKLRVAGLIQ 369
            E  G R   WWTG  P D PG +PDG ++S+P   L  CT+Q   DYFDN+W LTE+LF+SLQGEEAF  PP H LRHP+IFYYGH  V Y+NKLRVAGLI+
Sbjct:   28 ELTGLRSEQWWTGRKPQDCPGRQPDGTLTSLPLPHLASCTRQQTLDYFDNSWTLTELLFSSLQGEEAFFRPPYHHLRHPMIFYYGHPPVLYINKLRVAGLIE 129          
BLAST of mRNA_H-paniculata_contig16705.3788.1 vs. uniprot
Match: UPI0009A4A0BE (5-histidylcysteine sulfoxide synthase n=1 Tax=Zoogloea sp. LCSB751 TaxID=1965277 RepID=UPI0009A4A0BE)

HSP 1 Score: 140 bits (352), Expect = 5.720e-36
Identity = 62/99 (62.63%), Postives = 75/99 (75.76%), Query Frame = 1
Query:   73 GQRPTSWWTGLWPADAPGARPDGRVSSIPGLMLKGCTKQALQDYFDNAWVLTEILFASLQGEEAFLCPPTHGLRHPLIFYYGHTAVFYVNKLRVAGLIQ 369
            G RP  WWTGL P + PG +PDGR++++P   L  CT++++   FDN W LTE+LFASLQGEEAF  PP H LRHP++FYYGH AV YVNKLRVAGLI 
Sbjct:   31 GPRPAWWWTGLAPENCPGMQPDGRLTALPQPDLATCTRESVLATFDNGWTLTEVLFASLQGEEAFYRPPYHHLRHPMVFYYGHPAVLYVNKLRVAGLID 129          
BLAST of mRNA_H-paniculata_contig16705.3788.1 vs. uniprot
Match: A0A317MW88_9GAMM (5-histidylcysteine sulfoxide synthase/putative 4-mercaptohistidine N1-methyltransferase n=1 Tax=Plasticicumulans acidivorans TaxID=886464 RepID=A0A317MW88_9GAMM)

HSP 1 Score: 139 bits (351), Expect = 7.700e-36
Identity = 61/99 (61.62%), Postives = 75/99 (75.76%), Query Frame = 1
Query:   73 GQRPTSWWTGLWPADAPGARPDGRVSSIPGLMLKGCTKQALQDYFDNAWVLTEILFASLQGEEAFLCPPTHGLRHPLIFYYGHTAVFYVNKLRVAGLIQ 369
            G RP +WWTGL P D PG + DG +SS+P   L  C++ A++DYFDN W LTE+LFA+L+ E+AF  PP HGLRHP+IFYYGH  V YVNKLRVAGL+ 
Sbjct:   22 GPRPPAWWTGLPPQDCPGLQADGTLSSLPLPDLARCSRAAVRDYFDNTWTLTELLFATLRSEDAFFRPPYHGLRHPMIFYYGHPPVLYVNKLRVAGLLD 120          
BLAST of mRNA_H-paniculata_contig16705.3788.1 vs. uniprot
Match: A0A6P0V4K9_9CYAN (5-histidylcysteine sulfoxide synthase n=3 Tax=unclassified Symploca TaxID=2620434 RepID=A0A6P0V4K9_9CYAN)

HSP 1 Score: 134 bits (337), Expect = 2.110e-34
Identity = 61/102 (59.80%), Postives = 75/102 (73.53%), Query Frame = 1
Query:   70 FGQRPTSWWTGLWPADA--PGARPDGRVSSIPGLMLKGCTKQALQDYFDNAWVLTEILFASLQGEEAFLCPPTHGLRHPLIFYYGHTAVFYVNKLRVAGLIQ 369
             GQR   WWTG  P     PG R DG++SS+P L L  CT+Q + DYFDNAW LTE+LF++LQGEEAF  PP H LR+P IFYYGHTAVFY+NKL +A +++
Sbjct:   14 MGQREEWWWTGQPPQAGVCPGVRSDGKISSLPLLNLSQCTRQEVLDYFDNAWTLTEVLFSALQGEEAFYLPPYHQLRYPFIFYYGHTAVFYINKLCLARILE 115          
BLAST of mRNA_H-paniculata_contig16705.3788.1 vs. uniprot
Match: A0A848FYC3_9RHOO (5-histidylcysteine sulfoxide synthase n=3 Tax=Zoogloea TaxID=349 RepID=A0A848FYC3_9RHOO)

HSP 1 Score: 135 bits (340), Expect = 2.410e-34
Identity = 62/109 (56.88%), Postives = 76/109 (69.72%), Query Frame = 1
Query:   43 GTLDEVQERFGQRPTSWWTGLWPADAPGARPDGRVSSIPGLMLKGCTKQALQDYFDNAWVLTEILFASLQGEEAFLCPPTHGLRHPLIFYYGHTAVFYVNKLRVAGLIQ 369
            GT D   +  G RP  WWTGL P D PG +PDG ++++P   L  CT++++   FDN W LTE+LFASLQGEEAF  PP H LRHP++FYY H A  Y+NKLRVAGLI 
Sbjct:   14 GTHDAALQ--GPRPAWWWTGLSPQDCPGRQPDGTLTALPQPRLDTCTRESVLAAFDNGWTLTELLFASLQGEEAFYRPPYHHLRHPMVFYYCHPATLYINKLRVAGLID 120          
BLAST of mRNA_H-paniculata_contig16705.3788.1 vs. uniprot
Match: A0A3S0W6V6_9GAMM (5-histidylcysteine sulfoxide synthase n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A3S0W6V6_9GAMM)

HSP 1 Score: 135 bits (340), Expect = 2.430e-34
Identity = 59/102 (57.84%), Postives = 72/102 (70.59%), Query Frame = 1
Query:   64 ERFGQRPTSWWTGLWPADAPGARPDGRVSSIPGLMLKGCTKQALQDYFDNAWVLTEILFASLQGEEAFLCPPTHGLRHPLIFYYGHTAVFYVNKLRVAGLIQ 369
            E  G RP +WWTG  P D PG + DG  +++P   L  C+++ + DYFDN W LTEILFA L+GEEAF  PP H LRHP+IFYYGH    Y+NKLRVAGLI+
Sbjct:   20 ELVGARPAAWWTGCMPDDCPGRQADGTFTALPLPDLATCSREQVLDYFDNTWTLTEILFAGLRGEEAFFRPPYHHLRHPMIFYYGHPPALYINKLRVAGLIE 121          
BLAST of mRNA_H-paniculata_contig16705.3788.1 vs. uniprot
Match: A0A7S4C251_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C251_CHRCT)

HSP 1 Score: 127 bits (320), Expect = 4.160e-34
Identity = 60/105 (57.14%), Postives = 73/105 (69.52%), Query Frame = 1
Query:   49 LDEVQERFGQRPTSWWTGLWPADAPGARPDGRVSSIPGLMLKGCTKQALQDYFDNAWVLTEILFASLQGEEAFLCPPTHGLRHPLIFYYGHTAVFYVNKLRVAGL 363
            LD++ E  G+RP  WWTGL PA  PG   D  ++S+    L  C++Q + DYFDN W LTE+LFASLQG+ AF  PP H LRHPL+FYYGH A  YVNK R+AGL
Sbjct:   88 LDDLFE--GKRPNWWWTGLEPARCPGWTADRGLTSLAMPNLDTCSRQEVLDYFDNTWTLTELLFASLQGDAAFYLPPYHQLRHPLVFYYGHPAALYVNKFRLAGL 190          
BLAST of mRNA_H-paniculata_contig16705.3788.1 vs. uniprot
Match: W6MAJ6_9GAMM (Uncharacterized protein n=2 Tax=Candidatus Competibacteraceae TaxID=1400857 RepID=W6MAJ6_9GAMM)

HSP 1 Score: 134 bits (338), Expect = 4.560e-34
Identity = 61/102 (59.80%), Postives = 72/102 (70.59%), Query Frame = 1
Query:   64 ERFGQRPTSWWTGLWPADAPGARPDGRVSSIPGLMLKGCTKQALQDYFDNAWVLTEILFASLQGEEAFLCPPTHGLRHPLIFYYGHTAVFYVNKLRVAGLIQ 369
            E  G RPT WWTG  P D PG +PDG ++S+P   L   ++Q + DYFDN W LTEIL A L GEEAF  PP H LRHP+IFYYGH  V Y+NKLR+AGLI+
Sbjct:   29 ELIGPRPTWWWTGQPPQDCPGRQPDGTLTSLPLPDLASHSRQQVLDYFDNTWTLTEILLAGLCGEEAFFRPPYHHLRHPMIFYYGHPPVLYINKLRIAGLIE 130          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16705.3788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHG0_9PHAE1.710e-4260.50Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FTN7_ECTSI1.340e-3962.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7U7GD36_9GAMM2.270e-3661.76Uncharacterized protein n=1 Tax=Candidatus Contend... [more]
UPI0009A4A0BE5.720e-3662.635-histidylcysteine sulfoxide synthase n=1 Tax=Zoog... [more]
A0A317MW88_9GAMM7.700e-3661.625-histidylcysteine sulfoxide synthase/putative 4-m... [more]
A0A6P0V4K9_9CYAN2.110e-3459.805-histidylcysteine sulfoxide synthase n=3 Tax=uncl... [more]
A0A848FYC3_9RHOO2.410e-3456.885-histidylcysteine sulfoxide synthase n=3 Tax=Zoog... [more]
A0A3S0W6V6_9GAMM2.430e-3457.845-histidylcysteine sulfoxide synthase n=1 Tax=Cand... [more]
A0A7S4C251_CHRCT4.160e-3457.14Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
W6MAJ6_9GAMM4.560e-3459.80Uncharacterized protein n=2 Tax=Candidatus Competi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16705contigH-paniculata_contig16705:3418..4714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.5
Seed ortholog evalue1.3e-34
Seed eggNOG ortholog2880.D7FTN7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.dimethylhistidine N-methyltransferase activity
EggNOG OGs2QS9T@2759,COG4301@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size394
Cds size393
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929324.741675-CDS-H-paniculata_contig16705:3417..36211622929324.741675-CDS-H-paniculata_contig16705:3417..3621Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16705 3418..3621 -
1691480816.3092935-CDS-H-paniculata_contig16705:3417..36211691480816.3092935-CDS-H-paniculata_contig16705:3417..3621Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16705 3418..3621 -
1622929324.7620652-CDS-H-paniculata_contig16705:4525..47141622929324.7620652-CDS-H-paniculata_contig16705:4525..4714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16705 4526..4714 -
1691480816.3204968-CDS-H-paniculata_contig16705:4525..47141691480816.3204968-CDS-H-paniculata_contig16705:4525..4714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16705 4526..4714 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16705.3788.1prot_H-paniculata_contig16705.3788.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16705 3418..4714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16705.3788.1

>prot_H-paniculata_contig16705.3788.1 ID=prot_H-paniculata_contig16705.3788.1|Name=mRNA_H-paniculata_contig16705.3788.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
VKFKRSRSQHALADGTLDEVQERFGQRPTSWWTGLWPADAPGARPDGRVS
SIPGLMLKGCTKQALQDYFDNAWVLTEILFASLQGEEAFLCPPTHGLRHP
LIFYYGHTAVFYVNKLRVAGLIQVSWCIPR*
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mRNA from alignment at H-paniculata_contig16705:3418..4714-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16705.3788.1 ID=mRNA_H-paniculata_contig16705.3788.1|Name=mRNA_H-paniculata_contig16705.3788.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1297bp|location=Sequence derived from alignment at H-paniculata_contig16705:3418..4714- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCAAATTCAAGAGGAGTCGCTCCCAGCATGCACTAGCGGACGGTACTCT CGATGAAGTGCAAGAGCGTTTTGGACAGCGTCCGACGTCATGGTGGACTG GTCTTTGGCCAGCGGATGCCCCCGGTGCACGACCTGATGGGCGAGTTTCA TCAATTCCTGGGCTCATGCTCAAGGGCTGTACCAAGCAGGTGACTGTGTG TATGGGTGCTTGTACAGGTGCGTGTTGTTAGGTGTGCTGCTGGCAAGGTT AAACGTTTATCTCACATCGGATTAGTCAGATCGTTCACGGCCTGTGTGTA TTGTGTGTTTGTACTCGATGTCTCTGTCTATTGACTGCAGTCAGTCAAAG TGTTGTTATGGGTGTGTTGAGTTACTGCTTCGGCGATGGCGCGTCCAGCG CAAATAAACCTTAGTCGGCGCTCCTAGCCCTTCCCACTATCAATCGGAAG CTAGAAGCATTTTCACTTCACAGGCCATAGACCATGGTTCGTGATGGAGG CGCGCTTATCGCAGGCCCTGTTCATTTTGTGCGGTGTAACCTGAAAACAT GTGGGTCTTGGGTGCATTTCACGAGCATGTTCCGGCCGATTTGTCTTGAA TGAAAGCAGCAATCGCAGAAGTAAGAACAATTTTTGCTGCACTTGAGTCA TCCTACGGTAGGAGGGAGGTCAATTGTTTAACGAAGGCCTCTTCGCAAAA AGCGGTTCTAAAGTAACGCGTATAAAAACCATATCAATTGCATGTGTTTG TGCATCCTAAAGGTGCATAGTCCACAAAGTGAAATGAAACTTCTGTTTAA GGATGGCAACAAGTGTAAAACCAATTAACATAAAAAAAGGGAGAAAACAC CCGATCCCCTTCTCAAAGTGGCACCTTGATTGGACAAAGCGGCTCAAATT CCCCTCCCGCATACCGTAGGATGACTCACTTCGAGGGCTACATCCACATC ACGCAGCACCTGTCGGGGAAAGCGTGTGTACACGGCTTTGACCTTGATTG AATGCACAAAACAAATGAGAGCAAACGGTACGTACTAGACTGATGGATCT TGTGAATATTTTCTTCCATCTCCATTTATTATGCTTCTCTCAGGCCTTGC AGGACTACTTCGATAACGCATGGGTCTTGACAGAGATCTTGTTCGCCAGC CTTCAAGGAGAGGAGGCATTTCTATGCCCCCCAACCCATGGGCTACGCCA CCCTCTGATTTTCTACTACGGGCATACCGCGGTATTTTACGTGAACAAGC TGCGCGTTGCTGGACTCATTCAGGTGTCGTGGTGTATACCAAGATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig16705:3418..4714-

>mRNA_H-paniculata_contig16705.3788.1 ID=mRNA_H-paniculata_contig16705.3788.1|Name=mRNA_H-paniculata_contig16705.3788.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig16705:3418..4714- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCAAATTCAAGAGGAGTCGCTCCCAGCATGCACTAGCGGACGGTACTCT
CGATGAAGTGCAAGAGCGTTTTGGACAGCGTCCGACGTCATGGTGGACTG
GTCTTTGGCCAGCGGATGCCCCCGGTGCACGACCTGATGGGCGAGTTTCA
TCAATTCCTGGGCTCATGCTCAAGGGCTGTACCAAGCAGGTCAAATTCAA
GAGGAGTCGCTCCCAGCATGCACTAGCGGACGGTACTCTCGATGAAGTGC
AAGAGCGTTTTGGACAGCGTCCGACGTCATGGTGGACTGGTCTTTGGCCA
GCGGATGCCCCCGGTGCACGACCTGATGGGCGAGTTTCATCAATTCCTGG
GCTCATGCTCAAGGGCTGTACCAAGCAGGCCTTGCAGGACTACTTCGATA
ACGCATGGGTCTTGACAGAGATCTTGTTCGCCAGCCTTCAAGGAGAGGAG
GCATTTCTATGCCCCCCAACCCATGGGCTACGCCACCCTCTGATTTTCTA
CTACGGGCATACCGCGGTATTTTACGTGAACAAGCTGCGCGTTGCTGGAC
TCATTCAGGTGTCGTGGTGTATACCAAGATAAGCCTTGCAGGACTACTTC
GATAACGCATGGGTCTTGACAGAGATCTTGTTCGCCAGCCTTCAAGGAGA
GGAGGCATTTCTATGCCCCCCAACCCATGGGCTACGCCACCCTCTGATTT
TCTACTACGGGCATACCGCGGTATTTTACGTGAACAAGCTGCGCGTTGCT
GGACTCATTCAGGTGTCGTGGTGTATACCAAGATAA
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