mRNA_H-paniculata_contig1670.3786.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1670.3786.1
Unique NamemRNA_H-paniculata_contig1670.3786.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1670.3786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1670contigH-paniculata_contig1670:6169..7655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUAS
Ec32 orthologEc-27_002200.2
Exons2
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929324.643134-CDS-H-paniculata_contig1670:6168..62251622929324.643134-CDS-H-paniculata_contig1670:6168..6225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1670 6169..6225 -
1691480816.2811348-CDS-H-paniculata_contig1670:6168..62251691480816.2811348-CDS-H-paniculata_contig1670:6168..6225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1670 6169..6225 -
1622929324.6578195-CDS-H-paniculata_contig1670:7517..76551622929324.6578195-CDS-H-paniculata_contig1670:7517..7655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1670 7518..7655 -
1691480816.289575-CDS-H-paniculata_contig1670:7517..76551691480816.289575-CDS-H-paniculata_contig1670:7517..7655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1670 7518..7655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1670.3786.1prot_H-paniculata_contig1670.3786.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1670 6169..7655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1670.3786.1

>prot_H-paniculata_contig1670.3786.1 ID=prot_H-paniculata_contig1670.3786.1|Name=mRNA_H-paniculata_contig1670.3786.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
AGQGSEERRATDGRASTGGSSDNVDEGLRGERYMCDDDDVEVNISQVSSI
DDETGHGITDNEAQA
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mRNA from alignment at H-paniculata_contig1670:6169..7655-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1670.3786.1 ID=mRNA_H-paniculata_contig1670.3786.1|Name=mRNA_H-paniculata_contig1670.3786.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1487bp|location=Sequence derived from alignment at H-paniculata_contig1670:6169..7655- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGGCCAAGGGTCAGAGGAACGACGTGCGACTGACGGTAGAGCTTCGAC
TGGGGGGTCCAGCGACAATGTTGACGAGGGCTTGAGAGGCGAACGATACA
TGTGCGACGACGACGATGTGGAGGTCAACATATCGCAGGTGTGTAGCATA
GTAGTTTGGTTTCGCCGGAGTGCGCCCGTCGTGGTTCATCCTTGATATGG
AAGCAGTCCGTTGACTGATTCGTTGGGGAAGATCTCGTTGCCGACATGTA
AATAGTAAAATAGATGCTGCATGTGCACGTTGTTCTTGATTTAATCCCCC
CCCCCCGGACACGCCAACTGGTTTGAAATCGCTTGCTTGTACTACACGAG
GATTGGTGCAGTAGAGAGTAAAGCAGAACACATAATCAGTTTCTGTCAGT
AATAAAGTGTTCAACCATGGATATAGAAATAATGACATGATAACCCTGGA
CGATTTAATCATAAGAAGTCGCTCGCTAGTTAGAGGAGTCAATGCCTTGG
TGACTAGGCTGTTGTACGTTGGTTGGGTTTGTTTTCTCAACTGCGTATAG
CTAGAGGTTGTAGTAGTTGGCTACGGCTACGCCCTTGCAGTCTTACTCCA
GAACTCTATCCCTCACCCTCGCACACCCCAAGTTCTGCGCTTCCAAAAAT
AGTACACACAGTGTCCGCGAAGATTCTTTTTTATAAGTTACTCGAGTACA
GAGTTGGGAGGCTGTTCCTAGCCGACAACCGTATTATATTTATTTAGTAA
GGATGTGAGAGAACTGCTTCAAAGGAACGTTGCTGTGTGTGAGAGGAGGG
CGCAGCCTCTATGTGGACAGAGATGAAATATACTAAAATATTCCCTCTGT
ATGGCTGCTGCTCCTGTGCATGTCATATGGTGTTGCCGTAGTAGTGCATG
AGGGCGGAAGTTGGCGCATTGTGGTATCCACAGGTCCACTTTTCGTCCCA
TCTTGTGATTCGTCTGCTGCGAATCGCGTTATGAAGATGAGTCGTATCCG
ACGAATATGTTGACTGGTCTTCAGGAACGTTTGATTTTATTCTAGTGTCT
TCGTCAATTTGCAGTTTCGGCAGTACGGTACACGTGGGTGTGTGTGCAGT
TTTGTGGCGCCGTCGCGAAGCGAGATCAAGCCAACAGGGTTGATTCTCTG
CTCAAGGTCGAAGGCTTTTTGTTCTGTTTCTTTTCTCATGTCTTCGTGGG
TCTGCCTGTTTTTGGTGTGCGAGTCTCGTACATATATGTACCTGGTATTA
TGCGTATGCCATCTTCTTCTGAAGTCTTTTTGACAACCAAGCCAATAACA
CACGTGAACAAAACGGGCCTCTTGTTGTTTTTTTCTGGTTACCTGCTTGC
TTGCACGAGGCAATAAACACTGTTGCCCTGACTGGCCTTGCTATCGTGGT
TGTTGTTTTTCCTATTATTGTTTGTGCCAGGTATCCAGCATAGACGACGA
GACGGGCCACGGGATCACGGACAACGAAGCCCAGGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig1670:6169..7655-

>mRNA_H-paniculata_contig1670.3786.1 ID=mRNA_H-paniculata_contig1670.3786.1|Name=mRNA_H-paniculata_contig1670.3786.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig1670:6169..7655- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGGCCAAGGGTCAGAGGAACGACGTGCGACTGACGGTAGAGCTTCGAC
TGGGGGGTCCAGCGACAATGTTGACGAGGGCTTGAGAGGCGAACGATACA
TGTGCGACGACGACGATGTGGAGGTCAACATATCGCAGGCAGGCCAAGGG
TCAGAGGAACGACGTGCGACTGACGGTAGAGCTTCGACTGGGGGGTCCAG
CGACAATGTTGACGAGGGCTTGAGAGGCGAACGATACATGTGCGACGACG
ACGATGTGGAGGTCAACATATCGCAGGTATCCAGCATAGACGACGAGACG
GGCCACGGGATCACGGACAACGAAGCCCAGGCCGTATCCAGCATAGACGA
CGAGACGGGCCACGGGATCACGGACAACGAAGCCCAGGCC
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