prot_H-paniculata_contig167.3780.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig167.3780.1
Unique Nameprot_H-paniculata_contig167.3780.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length233
Homology
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BLAST of mRNA_H-paniculata_contig167.3780.1 vs. uniprot
Match: D7FLT5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLT5_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 2.860e-15
Identity = 62/189 (32.80%), Postives = 97/189 (51.32%), Query Frame = 0 
Query:   21 FDPQSFVNVGSWLSMQDRQAMESASTQTNSLXXXXXXXXXXXXXXXXXXXXXEARTRIA---RLKYLVCILLIAVVMLLGTNALFCVQRSALKSQNAALEARAIELEALAKNARKYHEPKMSPATGSNACE-AELIDTCWFKVGFGNCAKQAWVNPVGVAEGAWRSAWDSTVEFAEELSRAVVNDIHQL 205
            F P +FVNVG++LS Q+      ++++T+S                         + ++   R   +V  LL  VVMLLGTNA    Q  A K++ ++L  +  +LEA A+ +    +P  S +T S  C  ++LIDTCWFKVG+G+CA +A  +PV   E A+R A DS       ++    +D+ Q+
Sbjct:   35 FHPDTFVNVGNFLSSQESSERARSTSETSSQTPPPATIASVSTVTHVVDPSAPLTSLLSGGSRAGRIVLGLLAVVVMLLGTNAYSYNQSRAWKAETSSLREKVGKLEAAARTSAS--KPTWSTSTSSTTCPGSQLIDTCWFKVGWGDCANEALEDPVKPIEDAFRFALDSASGVIGAVTETFASDMSQV 221
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig167.3780.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLT5_ECTSI2.860e-1532.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 106..133
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 83..102
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..82
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 103..232
NoneNo IPR availableTMHMMTMhelixcoord: 83..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig167contigH-paniculata_contig167:6200..8844 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig167.3780.1mRNA_H-paniculata_contig167.3780.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig167 6147..10829 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig167.3780.1 ID=prot_H-paniculata_contig167.3780.1|Name=mRNA_H-paniculata_contig167.3780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=233bp
MKSDSKGESKVESSSSRSLDFDPQSFVNVGSWLSMQDRQAMESASTQTNS
LRTRSIASATISTDSRSTDSDSEARTRIARLKYLVCILLIAVVMLLGTNA
LFCVQRSALKSQNAALEARAIELEALAKNARKYHEPKMSPATGSNACEAE
LIDTCWFKVGFGNCAKQAWVNPVGVAEGAWRSAWDSTVEFAEELSRAVVN
DIHQLGKELHDLGGAVSSFLGGACSSSPGSEP*
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