mRNA_H-paniculata_contig16670.3769.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16670.3769.1
Unique NamemRNA_H-paniculata_contig16670.3769.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16670.3769.1 vs. uniprot
Match: D7FY65_ECTSI (AAA_12 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY65_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 1.370e-53
Identity = 113/217 (52.07%), Postives = 146/217 (67.28%), Query Frame = 1 
Query:    1 AMQAHTQLEFGASLKQGASSAERLDGEGWLTVRCEADPS-RDDRLSFYVNGRTKNN----MANGDPGHNFKTEPWVRHAVQFEGNTAPALVVMCNDGASDYETYITVAGAHGHGGVPSRTLYSQTRVRSLGYVGSFLREYGSAADLLCGVRSSRLLAAVAAPG-----PGKHAAGGTFVPVEDI-TIDTSCVPLNSTQRRAVANLSGGLDSIVGPPG 618
            AMQAHTQ EF AS +QG S+A+R  G GWL + C  +P  +D RLS+YV+G+++N         + GHNFK +PW RH V+FE ++  ALVV C +G +D E ++ +    G  G+P R+ +  TRVRSLGYVGSFLREYGSAA+LL    S  LL AVAAPG     P    AG TF+P   + T+DTS VPLN+TQ+ AV +L+GGLD +VGPPG
Sbjct:   92 AMQAHTQKEFEASARQGVSNADRQGG-GWLVLTCRPNPRWQDSRLSYYVHGKSENGGLGTRDTEEDGHNFKQDPWSRHLVEFEDSSI-ALVVACGEGVTDNEAFLAITP--GTDGIPVRSEHLHTRVRSLGYVGSFLREYGSAAELLRRDESDSLLNAVAAPGQQCTLPSSSGAG-TFLPRGQVRTLDTSSVPLNATQKDAVLSLTGGLDLVVGPPG 303
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BLAST of mRNA_H-paniculata_contig16670.3769.1 vs. uniprot
Match: A0A6H5JRT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT8_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 1.200e-36
Identity = 89/179 (49.72%), Postives = 116/179 (64.80%), Query Frame = 1 
Query:    1 AMQAHTQLEFGASLKQGASSAERLDGEGWLTVRCEADPS-RDDRLSFYVNGRTKNN----MANGDPGHNFKTEPWVRHAVQFEGNTAPALVVMCNDGASDYETYITVAGAHGHGGVPSRTLYSQTRVRSLGYVGSFLREYGSAADLLCGVRSSRLLAAVAAPG----PGKHAAGGTFVP 510
            AMQAHTQ EF AS +QG S+A+R  G GWL + C  +P  +D  LS+YV+G+++N         + GHNFK +PW RH V+FE ++  ALVV C +G +D + ++ +    G  G+P  + + QTRVRSLGYVGSFLREYGSAA+LL    S  LL AVAAPG    P    AG TF+P
Sbjct:   92 AMQAHTQKEFEASARQGVSNADRQGG-GWLLLTCRPNPRWQDSCLSYYVHGKSENGGLDTQDTEEDGHNFKQDPWSRHLVEFEDSSI-ALVVACVEGVTDNQAFLAIVP--GADGIPVLSEHLQTRVRSLGYVGSFLREYGSAAELLRRDESDSLLNAVAAPGQCTLPSSSGAG-TFLP 265
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16670.3769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FY65_ECTSI1.370e-5352.07AAA_12 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JRT8_9PHAE1.200e-3649.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16670contigH-paniculata_contig16670:525..1142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.8
Seed ortholog evalue3.1e-46
Seed eggNOG ortholog2880.D7FY65
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
EggNOG OGsCOG1112@1,KOG1802@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size618
Cds size615
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929322.08939-CDS-H-paniculata_contig16670:524..11391622929322.08939-CDS-H-paniculata_contig16670:524..1139Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16670 525..1139 -
1691480815.3105078-CDS-H-paniculata_contig16670:524..11391691480815.3105078-CDS-H-paniculata_contig16670:524..1139Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16670 525..1139 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929322.105347-UTR-H-paniculata_contig16670:1139..11421622929322.105347-UTR-H-paniculata_contig16670:1139..1142Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16670 1140..1142 -
1691480815.3227115-UTR-H-paniculata_contig16670:1139..11421691480815.3227115-UTR-H-paniculata_contig16670:1139..1142Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16670 1140..1142 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16670.3769.1prot_H-paniculata_contig16670.3769.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16670 525..1139 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16670.3769.1

>prot_H-paniculata_contig16670.3769.1 ID=prot_H-paniculata_contig16670.3769.1|Name=mRNA_H-paniculata_contig16670.3769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=205bp
MQAHTQLEFGASLKQGASSAERLDGEGWLTVRCEADPSRDDRLSFYVNGR
TKNNMANGDPGHNFKTEPWVRHAVQFEGNTAPALVVMCNDGASDYETYIT
VAGAHGHGGVPSRTLYSQTRVRSLGYVGSFLREYGSAADLLCGVRSSRLL
AAVAAPGPGKHAAGGTFVPVEDITIDTSCVPLNSTQRRAVANLSGGLDSI
VGPPG
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mRNA from alignment at H-paniculata_contig16670:525..1142-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16670.3769.1 ID=mRNA_H-paniculata_contig16670.3769.1|Name=mRNA_H-paniculata_contig16670.3769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=618bp|location=Sequence derived from alignment at H-paniculata_contig16670:525..1142- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGATGCAAGCCCATACCCAGCTTGAGTTCGGCGCGTCGCTCAAGCAGGG
CGCGAGTAGTGCAGAACGACTGGACGGTGAGGGCTGGCTGACGGTAAGAT
GTGAAGCCGATCCCAGCCGTGACGATCGCCTGTCGTTCTACGTGAATGGC
AGGACCAAGAATAACATGGCAAATGGTGACCCTGGACACAACTTCAAAAC
GGAGCCGTGGGTACGTCATGCCGTCCAATTCGAAGGCAACACTGCCCCTG
CCCTTGTAGTGATGTGCAACGATGGCGCAAGTGATTATGAGACATACATC
ACTGTGGCTGGTGCTCATGGCCACGGCGGTGTGCCGTCCCGTACACTGTA
CAGTCAAACTCGCGTGCGCTCTTTGGGTTATGTGGGATCATTTCTCCGGG
AGTACGGCAGCGCTGCGGACCTGCTTTGTGGTGTACGCAGCAGCAGGTTG
CTGGCTGCCGTTGCTGCCCCTGGCCCCGGGAAGCATGCAGCTGGGGGAAC
TTTTGTTCCAGTCGAAGATATCACAATTGATACTTCCTGTGTACCTCTCA
ACAGCACGCAACGCCGCGCCGTGGCGAACCTCAGTGGGGGCTTGGACAGC
ATCGTCGGCCCTCCAGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig16670:525..1142-

>mRNA_H-paniculata_contig16670.3769.1 ID=mRNA_H-paniculata_contig16670.3769.1|Name=mRNA_H-paniculata_contig16670.3769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1230bp|location=Sequence derived from alignment at H-paniculata_contig16670:525..1142- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAGCCCATACCCAGCTTGAGTTCGGCGCGTCGCTCAAGCAGGGCGC
GAGTAGTGCAGAACGACTGGACGGTGAGGGCTGGCTGACGGTAAGATGTG
AAGCCGATCCCAGCCGTGACGATCGCCTGTCGTTCTACGTGAATGGCAGG
ACCAAGAATAACATGGCAAATGGTGACCCTGGACACAACTTCAAAACGGA
GCCGTGGGTACGTCATGCCGTCCAATTCGAAGGCAACACTGCCCCTGCCC
TTGTAGTGATGTGCAACGATGGCGCAAGTGATTATGAGACATACATCACT
GTGGCTGGTGCTCATGGCCACGGCGGTGTGCCGTCCCGTACACTGTACAG
TCAAACTCGCGTGCGCTCTTTGGGTTATGTGGGATCATTTCTCCGGGAGT
ACGGCAGCGCTGCGGACCTGCTTTGTGGTGTACGCAGCAGCAGGTTGCTG
GCTGCCGTTGCTGCCCCTGGCCCCGGGAAGCATGCAGCTGGGGGAACTTT
TGTTCCAGTCGAAGATATCACAATTGATACTTCCTGTGTACCTCTCAACA
GCACGCAACGCCGCGCCGTGGCGAACCTCAGTGGGGGCTTGGACAGCATC
GTCGGCCCTCCAGGTATGCAAGCCCATACCCAGCTTGAGTTCGGCGCGTC
GCTCAAGCAGGGCGCGAGTAGTGCAGAACGACTGGACGGTGAGGGCTGGC
TGACGGTAAGATGTGAAGCCGATCCCAGCCGTGACGATCGCCTGTCGTTC
TACGTGAATGGCAGGACCAAGAATAACATGGCAAATGGTGACCCTGGACA
CAACTTCAAAACGGAGCCGTGGGTACGTCATGCCGTCCAATTCGAAGGCA
ACACTGCCCCTGCCCTTGTAGTGATGTGCAACGATGGCGCAAGTGATTAT
GAGACATACATCACTGTGGCTGGTGCTCATGGCCACGGCGGTGTGCCGTC
CCGTACACTGTACAGTCAAACTCGCGTGCGCTCTTTGGGTTATGTGGGAT
CATTTCTCCGGGAGTACGGCAGCGCTGCGGACCTGCTTTGTGGTGTACGC
AGCAGCAGGTTGCTGGCTGCCGTTGCTGCCCCTGGCCCCGGGAAGCATGC
AGCTGGGGGAACTTTTGTTCCAGTCGAAGATATCACAATTGATACTTCCT
GTGTACCTCTCAACAGCACGCAACGCCGCGCCGTGGCGAACCTCAGTGGG
GGCTTGGACAGCATCGTCGGCCCTCCAGGT
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