mRNA_H-paniculata_contig1667.3765.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1667.3765.1 vs. uniprot
Match: D7G7W0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7W0_ECTSI) HSP 1 Score: 265 bits (677), Expect = 3.790e-68 Identity = 460/1607 (28.62%), Postives = 617/1607 (38.39%), Query Frame = 1
Query: 76 EEMEDSSSQETVAPSTITSIITKKKGASRKGDGAPAPSNNTLTSFLA-SGSHSRSIWEDMNRQCPVCQKSGFSTGQALSLHVNSCLDTKVVFRGREGDEREVDGRTKRGEGA--EPQGKLTG-----GMEAD-------GGRNRPSETGPLPAARKPSRK--HGTGGGAPGCKRDGASSSRHTSSGG-------AKSGTSRR---------PDVRSLQSRVSISTQLPTSTAXXXXXXXXXXXXXXXXXXXXXXXRTQGRRRGL-LTRPRPLLKSSDNVMMPAAP--AKRNIKGTTAQQEDRNQIAQSQLLHVLEASKASAANNINGASQSSEGWLVAGLFPKADTEDGSDDSHSCTAFCSQVNGDLRKEDWENVGGGQCCKKKTES--GQIRRVRSRPASWRAHCNGKGPERPGMWPIGDRVDDDDDNIDECWGDGDGYLTLRPFPSAEEMARLEAQEDSSMADDDGVSERVDVPIAHCVADRKKVAARSSLADRFLEVFKQLQPARRALNLEDGAFPWSTMNGGTPISVEGGTTAAEXXXXXXXXXXXXXXXXXXXXXRVRTAAQGGSANAQR-GNSTGKHP-------GTINSSTTEEGSGMKRSDERVTARKEEIPSDISAAAHTSKGVGTGTGVPPEDGSVPSPLRRPLQRGLENRSKGAAGQKIDA-QPPRDPHQAKRRANKVLVSYESGSSSGNERGTGVTEYHSAIDLTSEPSSSDCPASGTASTGSVT----GIVHEVAV--FNSRAVTKESNAAIGENVRTLGSAIT---------------------------------------CSAQRQSNIPAASPKATAPQTPEASSRLPSSSTAALGTSARPTH--PAPDACSSRKSGGTAETRAMGPDCRPGASTTAPAATSGKRKAISDLSRACIREAARVQPAAAARGDHEAVDHKDMYGRGPDASTSGSDTDWGRTGAAAPGGGSG--RERTQWANSSNNLTYDAVCEAAGVVPKPTSSASGNVRNSAGDVNAARRSRSSRSITSDRRAGGKLTVVNANRGATLRDSWDIDDSEELGKLVCGVTLEYDAVWYVPPPDDECVGVMRYRVVPHAVLAPEGGWVSERGRFLAEPYQIVVASPFARSKPPPTATPHQKSAGHCSTATSTTSNSTHNPHNLALNRAGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPSSSQSLKGTTKSQNFATRTPLGVPRSSRELPSLLPPPPPNTPSNRHPVTHGPQKGRN-----------PSQNSTSMDSRSSRRESHGRPGAAVMPTGDLSKTV-LGGLVGQPNKLARSMISSERAR-LEARDSGDKVKCPGCYRGMDHWKQPQRQEHVHACLLRRQPSSSSSSVATNRPPALAKTASKTMTSRSRSTESGDNHTRASATAVRAGTVRTPMREFLPSGNRQSEGTGSGESGRFPGRAGEVYREGPRATRVSLQGVFSTPELAREREQPTPGQRPPTTYRPEEMPLSGAQAVARNSPKTKDSNSSVNKGAPTSRHDTSATITGQGGKFARCGMPNSRSNTAAASSISSSRSSGASHIGGNARRDSVGSKGLSECPVCKVAFASRIGQWEKQAHIQLCLDS 4569
EE++D+SSQE P ++ TKK+ ++K A APS+ TLT FL +G SRS W+D+NRQCPVCQ++GFS+ ++L+LHVN CL+ + R D G K G P G+ T G EA G +R T + P K HG GG ++D A+ T G A S TS+ D +R ++ +LP ST RRR L L RP+ SD + PAA A R KG ++ D +IAQ+QLL++ EAS A+ GWL LFP D E S D S +C G + G G+C + + RRVR RPASW A N + G WP G VDD +D CWGDGDGYLTL+ FP E + + +++ D G VD + + + A SS DRFL+VF +LQPARRAL L + P + G A V A+ G A+R G S P G NS+ T G RS E R+ +P A T V P SP++ + + K +G KI QPP++P Q ++ AN+ S E GS + T + S P+ P ST V G+ + V+ NS V K G + A + Q + + A+ T + + ++ + + A TH P P +G R+M P AT K++A S R V+ ++ G H G TS GA A SG R A S N + E A V P +A+ V + AG ++ R D R G LTVV GATLRDSW ID S ELG+L G L+YDAVWY+ P D +CVGV+RY VVPH LAP GGW+S GR +PY I+V + A S P A + G R G G H ++G TKS + A G ++ PS H G +G N P++ S S + GR P+ L K V GG G + +S A+ LEA DSGDKV CP C RGMDHWK QRQ+HVHACL+++ S+ + +A + P+ ++ + T S + S D G TP E P G R++EGTGS + R G +G EGPR++RVSLQGVFS P P + P T +++S+SR + A KGL+ECPVC V+F R GQWE+QAH+Q CLDS
Sbjct: 5 EEIDDNSSQEANLPPATLTLATKKRTKTKKDSPAVAPSS-TLTRFLGPAGPPSRSAWDDVNRQCPVCQQTGFSS-RSLALHVNDCLERRA--RADASDSESAAGGRKDAAGGVGNPDGRNTATATTVGNEASSAVTDVTGSGSREGNTRRMSREGTPKSKAVHGRGGEKQ-VRQDKAAKKTKTLQGERAIDTERAASATSKARVSHTRNQAADKTKSNTRAALQHRLPNSTQSSSPDGSQQPNPL--------------RRRALGLARPKGHQIVSDAMPTPAAASNASRARKGCDSRALD--EIAQAQLLYLREASARGPAHG--------GGWLGTKLFPAPDEEGESADDGSMDCWCVGTGGGEGAYR-SSCGVGECGTGRNTRMRKENRRVRGRPASWGARPNDEQWGWFGTWPAGGSVDDG--GVD-CWGDGDGYLTLKAFPPPETLVESDGEDER---DGGGAVMPVDAARSMRLGEEGSPAP-SSRVDRFLQVFSRLQPARRALRLHEPPTPXXXPQ-------DSGDNRANAKVKNVGTRSPPTAVAPTNKNTV--ASSSGPQQAERPGGSPTMRPSVEREPGGAGNSART----GTARSCEGERVRELTMPPPKRTALETISEVSANNNRRPGATIASSPVQSTSPAIIAS-FKSVSGHKISRKQPPQEPPQQRKPANR---SGEEGSRRHEQEDRNRTSSEGSSRKLSLPA----PTVRRTSTFEVQACSGGVENSVSAPKGNSPRVVKTPAKIYGPPNESAADAASQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTRRPVAVANENLTIGEHRKRTAHVDRAPVDAT------THGVPQPPPRHGSSTGSDEVKRSM------------PGATVAKKRASSSHER-------NVRVSSMDAGGHRRSQRDPPPGLQRAIPTSSQWNGSRSRGALASRASSGLLRSADLAARSENQRKEN---ENAKVAP----AANDGVVDLAGSNSSQLEECEGRKA--DVRQKGSLTVV-WEHGATLRDSWSIDSSHELGRLAFGALLDYDAVWYLSPADTDCVGVLRYSVVPHPRLAPTGGWISGSGRLRDDPY-IIVKAEAAPSIRPSKAASRDRGDG----------------------RGGSGQRQPNLDPH------------------------HHQGRVGVEGLTKSTHGAADG--GYTAAA--------------PSRGH---AGRSRGTNXXXXXXAERYEPAEESHSDRVSAGPTAEGGRRTQPQTPSRVLPKAVSAGGSFG--------LATSPSAKALEANDSGDKVTCPVCNRGMDHWKSGQRQQHVHACLMKQPSSAKKTRLAGDATPSASRPSGITHRSSLQFDGSSD-----------PGESTTPRPERRP-GVRRTEGTGS-SANRQEGPSGPS--EGPRSSRVSLQGVFS----------PKPARDPDGT-----------------------------------------------------------------NTVSASRGT-APXXXXXXXXXXXXXKGLTECPVCGVSFGGRQGQWERQAHVQQCLDS 1353 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1667.3765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1667.3765.1 >prot_H-paniculata_contig1667.3765.1 ID=prot_H-paniculata_contig1667.3765.1|Name=mRNA_H-paniculata_contig1667.3765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1513bp MDVQAHIEEMEDSSSQETVAPSTITSIITKKKGASRKGDGAPAPSNNTLTback to top mRNA from alignment at H-paniculata_contig1667:703..11260- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1667.3765.1 ID=mRNA_H-paniculata_contig1667.3765.1|Name=mRNA_H-paniculata_contig1667.3765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10558bp|location=Sequence derived from alignment at H-paniculata_contig1667:703..11260- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1667:703..11260- >mRNA_H-paniculata_contig1667.3765.1 ID=mRNA_H-paniculata_contig1667.3765.1|Name=mRNA_H-paniculata_contig1667.3765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=9078bp|location=Sequence derived from alignment at H-paniculata_contig1667:703..11260- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |