mRNA_H-paniculata_contig16657.3758.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16657.3758.1
Unique NamemRNA_H-paniculata_contig16657.3758.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16657.3758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16657contigH-paniculata_contig16657:2563..5462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1378
Cds size858
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16657.3758.1prot_H-paniculata_contig16657.3758.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16657 3083..5462 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929320.6318803-UTR-H-paniculata_contig16657:2562..30821622929320.6318803-UTR-H-paniculata_contig16657:2562..3082Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16657 2563..3082 +
1691480814.6709898-UTR-H-paniculata_contig16657:2562..30821691480814.6709898-UTR-H-paniculata_contig16657:2562..3082Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16657 2563..3082 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929320.6424332-CDS-H-paniculata_contig16657:3082..35021622929320.6424332-CDS-H-paniculata_contig16657:3082..3502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16657 3083..3502 +
1691480814.681881-CDS-H-paniculata_contig16657:3082..35021691480814.681881-CDS-H-paniculata_contig16657:3082..3502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16657 3083..3502 +
1622929320.652431-CDS-H-paniculata_contig16657:4122..43081622929320.652431-CDS-H-paniculata_contig16657:4122..4308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16657 4123..4308 +
1691480814.6918674-CDS-H-paniculata_contig16657:4122..43081691480814.6918674-CDS-H-paniculata_contig16657:4122..4308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16657 4123..4308 +
1622929320.6640108-CDS-H-paniculata_contig16657:4821..49651622929320.6640108-CDS-H-paniculata_contig16657:4821..4965Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16657 4822..4965 +
1691480814.7036953-CDS-H-paniculata_contig16657:4821..49651691480814.7036953-CDS-H-paniculata_contig16657:4821..4965Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16657 4822..4965 +
1622929320.6773107-CDS-H-paniculata_contig16657:5354..54621622929320.6773107-CDS-H-paniculata_contig16657:5354..5462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16657 5355..5462 +
1691480814.714138-CDS-H-paniculata_contig16657:5354..54621691480814.714138-CDS-H-paniculata_contig16657:5354..5462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16657 5355..5462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16657.3758.1

>prot_H-paniculata_contig16657.3758.1 ID=prot_H-paniculata_contig16657.3758.1|Name=mRNA_H-paniculata_contig16657.3758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=286bp
MTTSRNFLICPSMMFGGQDGVFMGELPKSEALYAGIGERESATRVRGALD
LGWTGRGETGEAEGVEVKRSCDGGAAQHDDGEDGNDDDDSAGDADDDGDY
AGGDEDGDDGDDGEDSGDDHGDYAGGEEDSDKFPAMESDEASFAAGSEVA
PFWPLTTRGLVSLCFVTVAACTVIVTWATRRVRDLKQRNVIAENRAEDYN
NLVRDNMDLTKKILRLWFLTDVHRTDLRLLNKKRKHWVETSKGLREEKKQ
LTASAEAATKRETAGVGQLAIERAEFCRCGGEHGQ*
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mRNA from alignment at H-paniculata_contig16657:2563..5462+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16657.3758.1 ID=mRNA_H-paniculata_contig16657.3758.1|Name=mRNA_H-paniculata_contig16657.3758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2900bp|location=Sequence derived from alignment at H-paniculata_contig16657:2563..5462+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATTCTATGTGCCCGCTCATTCTGAAACTCAGGCGAATACTTTTATTATA
TTGTTTTTTAAAAGCATTTGCAAGTATTCGTAGTTGTCCGGGGGATGAAA
CATTTTCATATTTTCCGAGGGAAGGTCCTTAGTTTCCATCATGGAGCTGC
AATATTTGTTCTATTATCCCGAAGTACAAAGTGCTTGATCGTATTTCTCT
TTATCCATGACGTCGGGTGCGTATTTTCATTATGCAGCAAGTACATGCAC
ATACTAAAAGTCATTCTTCCTGGTCTCCAACGGCACTGGGTGATGACAAA
TGCATGAAATGAAACCGATTTCTCTGTTGTATAGTCCGGCGAGTTTAGTC
GTCGTTTCTAAACAGTGTAGAACTCTGTACTCGAGTATCTTGGAAAAGCG
GCATTTTGAACGCTGTGCCAACTAACCTTATACGTTGGTCCAGGATAAAC
CATGGACTGCATGGCTGTGGCTTGTAGCTTGTAGTCGTGTTTCTACTATT
TAGCTTTCCATGTAACATCGATGACAACGAGCAGAAATTTCCTCATATGC
CCTTCCATGATGTTTGGCGGACAGGACGGTGTGTTTATGGGCGAGCTCCC
GAAGTCCGAGGCACTTTATGCTGGAATCGGAGAGAGGGAAAGCGCCACCC
GCGTACGGGGGGCACTAGATCTAGGTTGGACAGGCAGAGGTGAAACGGGA
GAGGCGGAGGGCGTTGAGGTCAAGCGAAGTTGTGATGGTGGTGCTGCTCA
GCATGATGATGGGGAAGATGGTAATGACGATGATGATAGTGCTGGTGATG
CTGATGACGATGGTGATTACGCTGGTGGTGATGAAGACGGTGATGATGGC
GATGATGGAGAAGATAGTGGTGATGACCATGGTGATTACGCTGGTGGTGA
AGAAGATAGTGACAAGTTCCCTGCCATGGAGAGCGACGAGGTACTCGTGG
CATGCCTTGATCAGATTGTGCCCAATAATGTTTTTCATTGGGTATTTCTG
TGTTATCGTGGCTTTCTTGATTTCTCTGCTTGTTGTTACTAATCCACGTA
CGAAGTTTAGGGTTAACCATATTTTAAATGTGCTTGGAAGCGCTCGTTTC
TGTTGTACAGTATACTCGTGGATACTGCGTGTCTTATTGATCCATACACA
ACACAGTGTTGTGTAGGCCAAAGCTGACACATTCGTGTTGTGTGCGTTTA
TCTCTAGACGAGAGGGTTGATTTGATAGACCTCAGACATAGCCATGTTGA
CAGCAGCTATGAAGTTTATTTTTGATACTTGATGACTCGCTCGCTCCTGA
AAGCCTATACATCGTTGTTAGTATTCAGAAATCGAACTCTAGGAAGATTA
TCCAAGGCTATGGCCATGAAGCTCTTTTAGATAAAACTATGTGAAAACGA
GAAATACTCGATCACCATCACAGCCAGATCACTCGGATGAAGTTATGCTT
GTCTCCGATCGCTCAATCTTATCCTCCTTCCCTCCTTCCCTGTGCCTCTT
CTCTTGGTGGAAAACTTGTGCGTACATACACTGGCGTGTACACATGTACA
CACATAGCAGGCATCCTTCGCGGCAGGAAGTGAGGTCGCTCCTTTTTGGC
CATTGACCACTCGAGGGCTCGTCTCCCTCTGTTTCGTCACCGTAGCTGCT
TGTACTGTAATCGTTACATGGGCCACGCGGCGGGTGCGAGATCTGAAGCA
AAGAAATGTGATAGCAGAAAACCGTGCTGAGGATTACAACAATTTGGTGC
GTACTGTATATAGCCACTCTTTATTAATCTTTTCGAGTAGAAAAATCACA
GCGGTAATGGTACACCTGAGCCAATGGCACACAGCGTAGTTAACGACAGG
GTCTGCTGATACGCAGAGCACTTCGTAGCCATGTGTGTGGCTAGTCGATG
TATTAGCTTGTAATCATCGCCGCTGCCGCCGCCGCCACCGCCACAACGAT
TATTTCCGTCTTCCTCAAGTGTAGGGTGTTTAGGTCCCATGTGTAGGGTA
GGTTGAGAAGTGAGATAGGAGGGATGAGAGATGACGGGGTTAGATACGAT
AGAGATGGAGGTATTCATAGCTTCACGGTACACCCACAAGAAGAAGGCCT
TCTGTTCCCCGCGCATAGTTGTGTTGCATTGTACCGTAAGGTTGATGTGT
CGTGGCGAAATAGATAATGTTTCAGTGCACTCTGTTGATGCCATAACAAG
AACACTTGGTGTTAAGTTTCGGCTGTTTTTTTATTCTTGTCCTGTATTGT
GCCGGTTAGGTTCGCGACAACATGGATCTGACCAAGAAGATATTACGTCT
CTGGTTTTTGACCGATGTGCACCGCACAGACTTGAGACTACTCAACAAGA
AGCGTAAGCATTGGGTTGAGACGTCGAAAGGTCTCCGGGAGGAAAAGAAA
CAGGTTTGTGCCGGGGGCAACGGTTAGGCTTGAACAAAACCAGTTCCGAT
CGATCGATGACCTCATCACCTCACTAGTATAGTCGGATGTGCACTGCACG
GACATAAAGGTACTCGAAAAGAAGCATAAGCATTGGGTTGAGACGTCGAA
AGGTCTCCAGGAGGAAAAGAAACAGGTTTGTGCCGGGGGCAACGGTTAGG
CTTGAACAAAACCAGTTCCGATCGATCAATGGCCTCATCATGGGTTAGGG
TTAGGGTTAGGGTTAGCAAATACGTGGAGCGTTTATCCCGATATGGGAGC
AAATACATGCACATCTCCACCTACTGTATCCGAATTCAGAATAATCACCT
GTAAATATCTAGTCTTCGCGTGAACTCGTGCTTATTCCACAGCTGACTGC
TAGCGCTGAAGCCGCAACGAAGAGGGAGACAGCCGGCGTTGGTCAGCTAG
CTATTGAGAGGGCAGAGTTCTGCAGGTGTGGTGGGGAACACGGACAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig16657:2563..5462+

>mRNA_H-paniculata_contig16657.3758.1 ID=mRNA_H-paniculata_contig16657.3758.1|Name=mRNA_H-paniculata_contig16657.3758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1716bp|location=Sequence derived from alignment at H-paniculata_contig16657:2563..5462+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAACGAGCAGAAATTTCCTCATATGCCCTTCCATGATGTTTGGCGG
ACAGGACGGTGTGTTTATGGGCGAGCTCCCGAAGTCCGAGGCACTTTATG
CTGGAATCGGAGAGAGGGAAAGCGCCACCCGCGTACGGGGGGCACTAGAT
CTAGGTTGGACAGGCAGAGGTGAAACGGGAGAGGCGGAGGGCGTTGAGGT
CAAGCGAAGTTGTGATGGTGGTGCTGCTCAGCATGATGATGGGGAAGATG
GTAATGACGATGATGATAGTGCTGGTGATGCTGATGACGATGGTGATTAC
GCTGGTGGTGATGAAGACGGTGATGATGGCGATGATGGAGAAGATAGTGG
TGATGACCATGGTGATTACGCTGGTGGTGAAGAAGATAGTGACAAGTTCC
CTGCCATGGAGAGCGACGAGATGACAACGAGCAGAAATTTCCTCATATGC
CCTTCCATGATGTTTGGCGGACAGGACGGTGTGTTTATGGGCGAGCTCCC
GAAGTCCGAGGCACTTTATGCTGGAATCGGAGAGAGGGAAAGCGCCACCC
GCGTACGGGGGGCACTAGATCTAGGTTGGACAGGCAGAGGTGAAACGGGA
GAGGCGGAGGGCGTTGAGGTCAAGCGAAGTTGTGATGGTGGTGCTGCTCA
GCATGATGATGGGGAAGATGGTAATGACGATGATGATAGTGCTGGTGATG
CTGATGACGATGGTGATTACGCTGGTGGTGATGAAGACGGTGATGATGGC
GATGATGGAGAAGATAGTGGTGATGACCATGGTGATTACGCTGGTGGTGA
AGAAGATAGTGACAAGTTCCCTGCCATGGAGAGCGACGAGGCATCCTTCG
CGGCAGGAAGTGAGGTCGCTCCTTTTTGGCCATTGACCACTCGAGGGCTC
GTCTCCCTCTGTTTCGTCACCGTAGCTGCTTGTACTGTAATCGTTACATG
GGCCACGCGGCGGGTGCGAGATCTGAAGCAAAGAAATGTGATAGCAGAAA
ACCGTGCTGAGGATTACAACAATTTGGCATCCTTCGCGGCAGGAAGTGAG
GTCGCTCCTTTTTGGCCATTGACCACTCGAGGGCTCGTCTCCCTCTGTTT
CGTCACCGTAGCTGCTTGTACTGTAATCGTTACATGGGCCACGCGGCGGG
TGCGAGATCTGAAGCAAAGAAATGTGATAGCAGAAAACCGTGCTGAGGAT
TACAACAATTTGGTTCGCGACAACATGGATCTGACCAAGAAGATATTACG
TCTCTGGTTTTTGACCGATGTGCACCGCACAGACTTGAGACTACTCAACA
AGAAGCGTAAGCATTGGGTTGAGACGTCGAAAGGTCTCCGGGAGGAAAAG
AAACAGGTTCGCGACAACATGGATCTGACCAAGAAGATATTACGTCTCTG
GTTTTTGACCGATGTGCACCGCACAGACTTGAGACTACTCAACAAGAAGC
GTAAGCATTGGGTTGAGACGTCGAAAGGTCTCCGGGAGGAAAAGAAACAG
CTGACTGCTAGCGCTGAAGCCGCAACGAAGAGGGAGACAGCCGGCGTTGG
TCAGCTAGCTATTGAGAGGGCAGAGTTCTGCAGGTGTGGTGGGGAACACG
GACAGTAACTGACTGCTAGCGCTGAAGCCGCAACGAAGAGGGAGACAGCC
GGCGTTGGTCAGCTAGCTATTGAGAGGGCAGAGTTCTGCAGGTGTGGTGG
GGAACACGGACAGTAA
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