mRNA_H-paniculata_contig1664.3754.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1664.3754.1
Unique NamemRNA_H-paniculata_contig1664.3754.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1664.3754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1664contigH-paniculata_contig1664:19484..20034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size551
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1664.3754.1prot_H-paniculata_contig1664.3754.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1664 19509..19823 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929319.8941479-UTR-H-paniculata_contig1664:19483..195081622929319.8941479-UTR-H-paniculata_contig1664:19483..19508Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1664 19484..19508 +
1691480814.2403932-UTR-H-paniculata_contig1664:19483..195081691480814.2403932-UTR-H-paniculata_contig1664:19483..19508Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1664 19484..19508 +
1622929319.9268796-UTR-H-paniculata_contig1664:19823..200341622929319.9268796-UTR-H-paniculata_contig1664:19823..20034Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1664 19824..20034 +
1691480814.2582004-UTR-H-paniculata_contig1664:19823..200341691480814.2582004-UTR-H-paniculata_contig1664:19823..20034Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1664 19824..20034 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929319.9085863-CDS-H-paniculata_contig1664:19508..198231622929319.9085863-CDS-H-paniculata_contig1664:19508..19823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1664 19509..19823 +
1691480814.248677-CDS-H-paniculata_contig1664:19508..198231691480814.248677-CDS-H-paniculata_contig1664:19508..19823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1664 19509..19823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1664.3754.1

>prot_H-paniculata_contig1664.3754.1 ID=prot_H-paniculata_contig1664.3754.1|Name=mRNA_H-paniculata_contig1664.3754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MSGGSSCHRSFFFLFFYFLTLIVWKDVCVMENNTWGGYTGDQDSCSSGVA
VILCLLYSFVDWFMVFRFFAWFYQDMLNECSIFFSSTHRQINRINRCPFS
TRVL*
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mRNA from alignment at H-paniculata_contig1664:19484..20034+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1664.3754.1 ID=mRNA_H-paniculata_contig1664.3754.1|Name=mRNA_H-paniculata_contig1664.3754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=551bp|location=Sequence derived from alignment at H-paniculata_contig1664:19484..20034+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGCACGGCAATAGTCAAGTGTGATGAGTGGTGGTTCAAGTTGTCATC
GTTCCTTTTTTTTTCTTTTTTTTTACTTCCTTACCCTCATTGTGTGGAAG
GATGTGTGTGTCATGGAAAACAATACCTGGGGTGGATATACGGGGGACCA
GGACAGTTGTTCGAGTGGAGTGGCGGTGATATTATGTTTGTTGTATTCGT
TCGTCGATTGGTTTATGGTCTTTCGTTTTTTTGCTTGGTTTTATCAAGAC
ATGTTGAATGAGTGCAGTATTTTTTTTTCTTCCACTCATAGGCAAATAAA
TCGCATAAACAGATGTCCGTTTTCTACTCGTGTTCTGTAAAGTATTCTCA
ATATTTTGGGGTTGTGATCTGTGATGCAGGCGCTACTTTTTATGCGGTGC
CCTGCCTGCTGTACTGTTGCGTGTTGCAAATCGGTTTTTGGAGGGATACA
TTGAGCACGAGTACAGAGCCATATTCACTACATTGATTCCCGAGAAAGGA
TTGCATTGTTTTGTTTTTTTCCTTTGCGGGAACGTGATAGAAATGTACAG
G
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Coding sequence (CDS) from alignment at H-paniculata_contig1664:19484..20034+

>mRNA_H-paniculata_contig1664.3754.1 ID=mRNA_H-paniculata_contig1664.3754.1|Name=mRNA_H-paniculata_contig1664.3754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig1664:19484..20034+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTGGTGGTTCAAGTTGTCATCGTTCCTTTTTTTTTCTTTTTTTTTA
CTTCCTTACCCTCATTGTGTGGAAGGATGTGTGTGTCATGGAAAACAATA
CCTGGGGTGGATATACGGGGGACCAGGACAGTTGTTCGAGTGGAGTGGCG
GTGATATTATGTTTGTTGTATTCGTTCGTCGATTGGTTTATGGTCTTTCG
TTTTTTTGCTTGGTTTTATCAAGACATGTTGAATGAGTGCAGTATTTTTT
TTTCTTCCACTCATAGGCAAATAAATCGCATAAACAGATGTCCGTTTTCT
ACTCGTGTTCTGTAAATGAGTGGTGGTTCAAGTTGTCATCGTTCCTTTTT
TTTTCTTTTTTTTTACTTCCTTACCCTCATTGTGTGGAAGGATGTGTGTG
TCATGGAAAACAATACCTGGGGTGGATATACGGGGGACCAGGACAGTTGT
TCGAGTGGAGTGGCGGTGATATTATGTTTGTTGTATTCGTTCGTCGATTG
GTTTATGGTCTTTCGTTTTTTTGCTTGGTTTTATCAAGACATGTTGAATG
AGTGCAGTATTTTTTTTTCTTCCACTCATAGGCAAATAAATCGCATAAAC
AGATGTCCGTTTTCTACTCGTGTTCTGTAA
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